View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13367_high_8 (Length: 250)
Name: NF13367_high_8
Description: NF13367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13367_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 50111533 - 50111748
Alignment:
| Q |
19 |
agcaccatattagaaaattaaacatgccaaactatgaagtagaaatttcaaagtcactccctcccgaagtaacacaacaacagagtatgctagtagggca |
118 |
Q |
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| T |
50111533 |
agcaccatattagaaaattaaacatgccaaactattaagtagaaatttcaaagtcactccctcccgaagtaacacaacaacagagtatgctagtagggca |
50111632 |
T |
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| Q |
119 |
cccacacgcgaagttatcgtgcccagtccggaaatgcttcttccttcggtagttgtgccagaagagccttctgctgcagtcatcgagcctagtcaggaag |
218 |
Q |
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| T |
50111633 |
cccatgcgtgaagttatcgttcctggtccggaaatgcttcttccttcggtagttgtgccagaagagccttctgctgcagtcatcgagcctagtcaggaaa |
50111732 |
T |
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| Q |
219 |
tgcccacgaggagtca |
234 |
Q |
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|||||||||||||||| |
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| T |
50111733 |
tgcccacgaggagtca |
50111748 |
T |
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Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 62 - 130
Target Start/End: Complemental strand, 12790380 - 12790312
Alignment:
| Q |
62 |
aatttcaaagtcactccctcccgaagtaacacaacaacagagtatgctagtagggcacccacacgcgaa |
130 |
Q |
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|||||| ||||||||||||| | ||| |||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
12790380 |
aatttcgaagtcactccctcacaaagaaacacaacaacagagtatactagtagggcacccatacgcgaa |
12790312 |
T |
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