View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13367_low_10 (Length: 240)
Name: NF13367_low_10
Description: NF13367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13367_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 50111805 - 50112029
Alignment:
| Q |
1 |
cagatctgttcctccattggctgtggtggaatgtggcttagcatgaggaaaatcggttacacaccatccttgctgcttctttctagcaacattaattttg |
100 |
Q |
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| T |
50111805 |
cagatctgttcctccattggcagtggtggaatgtggcttagcatgaggaaaatcggttacacaccatccttgctgcttctttctagcaacattaattttg |
50111904 |
T |
|
| Q |
101 |
cataaaacctatttctgcgactgtgtgataattttgaagttaaatttgttcctaaatacacattagtatagcagcatcagtataccaagttttaaagtaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50111905 |
cataaaacctatttctgcgactgtgtgataattttgaagttaaatctgttcctaaatacacattagtatagcagcatcagtataccaagttttaaagtaa |
50112004 |
T |
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| Q |
201 |
gcaacagatacaagatggataaatt |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
50112005 |
gcaacagatacaagatggataaatt |
50112029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 50078175 - 50078018
Alignment:
| Q |
1 |
cagatctgttcctccattggctgt---ggtggaatgtggcttagcatgaggaaaatcggttacacaccatccttgctgcttctttctagcaacattaatt |
97 |
Q |
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||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50078175 |
cagatctgttcctccattggcagtagtggtggaatgtggcttagcatgaggaaaatcggttacacaccatccttgctgcttctttctagcaacattaatt |
50078076 |
T |
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| Q |
98 |
ttgcataaaacctatttctgcgactgtgtgataattttgaagttaaatttgttcctaa |
155 |
Q |
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| T |
50078075 |
ttgcataaaatttatttctgtgactgtgtgataatttttaagttaaatttgttcctaa |
50078018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 166 - 217
Target Start/End: Complemental strand, 49107472 - 49107421
Alignment:
| Q |
166 |
gtatagcagcatcagtataccaagttttaaagtaagcaacagatacaagatg |
217 |
Q |
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| T |
49107472 |
gtatagcagcatgagtataccaagttttaaagtaagcaagagatacaagatg |
49107421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 49107681 - 49107641
Alignment:
| Q |
74 |
tgcttctttctagcaacattaattttgcataaaacctattt |
114 |
Q |
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| T |
49107681 |
tgcttctttctagcaacattaattttgcataaaatctattt |
49107641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 10796585 - 10796428
Alignment:
| Q |
1 |
cagatctgttcctccattggctgt---ggtggaatgtggcttagcatgaggaaaatcggttacacaccatccttgctgcttctttctagcaacattaatt |
97 |
Q |
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||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10796585 |
cagatctgttcctccattggcagtagtggtggaatgtggcttagcatgaggaaaatcggttacacaccatccttgctgcttctttctagcaacattaatt |
10796486 |
T |
|
| Q |
98 |
ttgcataaaacctatttctgcgactgtgtgataattttgaagttaaatttgttcctaa |
155 |
Q |
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|||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
10796485 |
ttgcataaaatttatttctgtgactgtgtgataatttttaagttaaatttgttcctaa |
10796428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 74 - 169
Target Start/End: Original strand, 40053504 - 40053599
Alignment:
| Q |
74 |
tgcttctttctagcaacattaattttgcataaaacctatttctgcgactgtgtgataattttgaagttaaatttgttcctaaatacacattagtat |
169 |
Q |
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||||| ||||||||||||| |||||||| ||||| ||||| || ||||| |||||||||||||||||| ||||||||||| || |||||||||| |
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| T |
40053504 |
tgcttgtttctagcaacataaattttgcctaaaatctattcctaagactgcgtgataattttgaagttatgtttgttcctaagtatacattagtat |
40053599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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