View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13367_low_2 (Length: 692)

Name: NF13367_low_2
Description: NF13367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13367_low_2
NF13367_low_2
[»] chr1 (5 HSPs)
chr1 (164-456)||(42169271-42169572)
chr1 (1-166)||(42169655-42169820)
chr1 (529-571)||(42169174-42169216)
chr1 (474-515)||(42169212-42169253)
chr1 (84-141)||(48064182-48064241)
[»] chr7 (3 HSPs)
chr7 (353-456)||(21686047-21686150)
chr7 (280-329)||(7725551-7725600)
chr7 (84-113)||(5620261-5620290)
[»] scaffold0002 (1 HSPs)
scaffold0002 (294-400)||(333841-333947)
[»] chr4 (2 HSPs)
chr4 (84-138)||(17823012-17823068)
chr4 (85-113)||(30090132-30090160)
[»] chr5 (1 HSPs)
chr5 (84-112)||(14955597-14955625)
[»] chr3 (1 HSPs)
chr3 (85-113)||(37308232-37308260)


Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 164 - 456
Target Start/End: Complemental strand, 42169572 - 42169271
Alignment:
Q  164 tctcataaacggttataaaagtgcttatgtcactagataagcttgaataagtgaattcaaaaatgaaatttggaaagtagtattaattaccaacaaataa 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  42169572 tctcataaacggttataaaagtgcttatgtcactagataagcttgaataagtgaattcaaaaatgaaatttggaaagtaatattaattaccaacaaataa 42169473  T
Q  264 t--------gtgtagccatggattatt-attacctatggtgagtttcagctatacccatcatagtaagataatggctgaaagcacgagcaagagtgaaag 354  Q
    |        |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42169472 tcagagttagtgtagccatggattatttattacctatggtgagtttcagctatacccatcatagtaagataatggctgaaagcacgagcaagagtgaaag 42169373  T
Q  355 cttcttctaatgacatctttgacaactctgaagctaactgcttctcaagtaactcagccatgttcactatacctgcttgcctcatattgcatgcactctg 454  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42169372 cttcttctaatgacatctttgacaaatctgaagctaactgcttctcaagtaactcagccatgttcactatacctgcttgcctcatattgcatgcactctg 42169273  T
Q  455 cc 456  Q
    ||    
T  42169272 cc 42169271  T

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Target: chr1; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 42169820 - 42169655
Alignment:
Q  1 agattttgaaatttgtgccatattccctcctttacgaaccctgtgaaaatgtaatttctgttagagattaccattaccctacgtaggccctgtttggata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42169820 agattttgaaatttgtgccatattccctcctttacgaaccctgtgaacatgtaatttctgttagagattaccattaccctacgtaggccctgtttggata 42169721  T
Q  101 aacaacttaattagcctcatagcataaggacttatcatgatattcacttatctataagttatttct 166  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42169720 aacaacttaattagcctcatagcataaggactcatcatgatattcacttatctataagttatttct 42169655  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 529 - 571
Target Start/End: Complemental strand, 42169216 - 42169174
Alignment:
Q  529 gtgtcagtgcttcatagattttcacattcagcaagggggaaaa 571  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  42169216 gtgtcagtgcttcatagattttcacattaagcaagggggaaaa 42169174  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 515
Target Start/End: Complemental strand, 42169253 - 42169212
Alignment:
Q  474 tagaaacatcattcactagcactcacttatcaaaggcgtgtc 515  Q
    ||||||||||||||||||  |||||||||| |||||||||||    
T  42169253 tagaaacatcattcactattactcacttatgaaaggcgtgtc 42169212  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 84 - 141
Target Start/End: Original strand, 48064182 - 48064241
Alignment:
Q  84 taggccctgtttggataaacaacttaattagc--ctcatagcataaggacttatcatgat 141  Q
    |||||| |||||||||||||||||||||| ||  || ||||||||||  |||||||||||    
T  48064182 taggccatgtttggataaacaacttaatttgcagcttatagcataagcccttatcatgat 48064241  T

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Target: chr7 (Bit Score: 88; Significance: 6e-42; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 353 - 456
Target Start/End: Original strand, 21686047 - 21686150
Alignment:
Q  353 agcttcttctaatgacatctttgacaactctgaagctaactgcttctcaagtaactcagccatgttcactatacctgcttgcctcatattgcatgcactc 452  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  21686047 agcttcttctaaagacatctttgacaactctgaagctaactgcttctcaattaactcagccatgttcactatacctgcttgcctcatattacatccactc 21686146  T
Q  453 tgcc 456  Q
    ||||    
T  21686147 tgcc 21686150  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 280 - 329
Target Start/End: Original strand, 7725551 - 7725600
Alignment:
Q  280 attattacctatggtgagtttcagctatacccatcatagtaagataatgg 329  Q
    ||||||||||||||||||||||||||||| |  ||| |||||||||||||    
T  7725551 attattacctatggtgagtttcagctatatcagtcacagtaagataatgg 7725600  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 113
Target Start/End: Complemental strand, 5620290 - 5620261
Alignment:
Q  84 taggccctgtttggataaacaacttaatta 113  Q
    ||||||||||||||||||||||||||||||    
T  5620290 taggccctgtttggataaacaacttaatta 5620261  T

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Target: scaffold0002 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 294 - 400
Target Start/End: Complemental strand, 333947 - 333841
Alignment:
Q  294 tgagtttcagctatacccatcatagtaagataatggctgaaagcacgagcaagagtgaaagcttcttctaatgacatctttgacaactctgaagctaact 393  Q
    |||||||||||||| | ||||||||||||||| || ||||| ||||||||||| ||   ||||||||||||   |||||| || ||||||||||| ||||    
T  333947 tgagtttcagctatgctcatcatagtaagatagtgactgaatgcacgagcaagtgtttgagcttcttctaagttcatcttggataactctgaagccaact 333848  T
Q  394 gcttctc 400  Q
    |||||||    
T  333847 gcttctc 333841  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 138
Target Start/End: Original strand, 17823012 - 17823068
Alignment:
Q  84 taggccctgtttggataaacaacttaattagc--ctcatagcataaggacttatcat 138  Q
    |||||| |||||||||||||| ||||||| ||  |||||||||||||| ||||||||    
T  17823012 taggccttgtttggataaacagcttaatttgcagctcatagcataagggcttatcat 17823068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 85 - 113
Target Start/End: Original strand, 30090132 - 30090160
Alignment:
Q  85 aggccctgtttggataaacaacttaatta 113  Q
    |||||||||||||||||||||||||||||    
T  30090132 aggccctgtttggataaacaacttaatta 30090160  T

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Target: chr5 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 84 - 112
Target Start/End: Original strand, 14955597 - 14955625
Alignment:
Q  84 taggccctgtttggataaacaacttaatt 112  Q
    |||||||||||||||||||||||||||||    
T  14955597 taggccctgtttggataaacaacttaatt 14955625  T

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Target: chr3 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 85 - 113
Target Start/End: Complemental strand, 37308260 - 37308232
Alignment:
Q  85 aggccctgtttggataaacaacttaatta 113  Q
    |||||||||||||||||||||||||||||    
T  37308260 aggccctgtttggataaacaacttaatta 37308232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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