View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13367_low_4 (Length: 414)
Name: NF13367_low_4
Description: NF13367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13367_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 6 - 398
Target Start/End: Original strand, 32532184 - 32532576
Alignment:
| Q |
6 |
agaaacaatgtaaagcaaagtcaacaaatcacccttattaacaacatgagtaagtgcccaaatcattgcatgcttagaatgtgaagtaccatcaaccaca |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32532184 |
agaaacaatgtaaagcaaagtcaacaaatcacccttattaacaacatgagtaagtgcccaaatcattgcatgcttagaatgtgaagtaccatcaaccaca |
32532283 |
T |
|
| Q |
106 |
accataactctctttctcaccatcattccacaactctcttcatttccatacatgttaatgttaaacccttccatttgactcaaatttgtctcacaagtca |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
32532284 |
accataactctctttctcaccatcattccacaactctcttcatttccatacatgttaatgttaaacccttccatttgactcaaatttgtctcacaactca |
32532383 |
T |
|
| Q |
206 |
ctcctaaactattgttgttgtatgtgttttttccactccacctatttgatgttgatttccaagtctcctttgcacttaactgcctcaaaaatgaagctga |
305 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32532384 |
cccctaaactattgttgttgtatgtgttttttccactccacctatttgatgttgatttccaagtctcctttgcacttaactgcctcaaaaatgaagctga |
32532483 |
T |
|
| Q |
306 |
acttggcattttcacaactccttgtgccttatttatgcaaccacaaatataactattattgctagttgaatagctgaaagagggagtataggg |
398 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32532484 |
acttggcattttcacaactccttttgccttatttatgcaaccacaaatgtaactattattgctagttgaatagctgaaagagggagtgtaggg |
32532576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University