View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13367_low_7 (Length: 357)
Name: NF13367_low_7
Description: NF13367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13367_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 20 - 319
Target Start/End: Original strand, 255220 - 255532
Alignment:
| Q |
20 |
agagcttcagggacgctccaaatgagagggaaaaagaagaaaccgagtaaggatagaagaggaccaccgccggttctaacagaatcctcaactccgaatg |
119 |
Q |
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| T |
255220 |
agagcttcagggacgctccaaatgagagggaaaaggaagaaaccgagtaaggatagaagaggaccaccgccggtactaacagaatcctcaactccgaatg |
255319 |
T |
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| Q |
120 |
gaccgccggagacttcgtagaagattagagcaataagaggtaataaggttagttttggatttgatttggcatcatccatcaatagaataaaggtaccaat |
219 |
Q |
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| T |
255320 |
gaccgccggagacttcgtagaagattagagcaataagaggtaataaggttagttttggatttgatttggcatcatccatcaatagaataaaggtaccaat |
255419 |
T |
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| Q |
220 |
tcggatgagattaac------------aatatttttattcagatctgttcacagcacaaccttcctgttgcttaacttcttgaatcaa-taataaatcaa |
306 |
Q |
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||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
255420 |
tcggacgagattaacttcttgcttgttaatatttttattcagatctgttcacagcacaaccttcatgttgcttaacttcttgaatcaattaataaatcaa |
255519 |
T |
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| Q |
307 |
ttttttcattact |
319 |
Q |
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||||||||||||| |
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| T |
255520 |
ttttttcattact |
255532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 134
Target Start/End: Original strand, 21244366 - 21244444
Alignment:
| Q |
56 |
aagaaaccgagtaaggatagaagaggaccaccgccggttctaacagaatcctcaactccgaatggaccgccggagactt |
134 |
Q |
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||||| |||||||||||||||||||||||||| |||| |||| ||||||| ||||||||||| |||| ||||||||| |
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| T |
21244366 |
aagaagccgagtaaggatagaagaggaccaccaccggctctatcagaatcttcaactccgaagagaccatcggagactt |
21244444 |
T |
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