View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13368_high_1 (Length: 505)

Name: NF13368_high_1
Description: NF13368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13368_high_1
NF13368_high_1
[»] chr8 (5 HSPs)
chr8 (17-221)||(8779489-8779691)
chr8 (292-409)||(8779766-8779883)
chr8 (49-120)||(5325093-5325162)
chr8 (455-489)||(8779902-8779936)
chr8 (49-120)||(34792826-34792895)
[»] chr7 (3 HSPs)
chr7 (49-121)||(24518486-24518556)
chr7 (57-110)||(8634099-8634150)
chr7 (53-110)||(44405550-44405605)
[»] chr5 (2 HSPs)
chr5 (49-130)||(26402976-26403055)
chr5 (49-110)||(10596634-10596693)
[»] chr4 (3 HSPs)
chr4 (49-110)||(29963085-29963144)
chr4 (49-110)||(7744735-7744794)
chr4 (49-96)||(35683349-35683394)
[»] chr2 (3 HSPs)
chr2 (51-106)||(18724001-18724056)
chr2 (49-120)||(4831558-4831626)
chr2 (26-110)||(32347721-32347803)
[»] chr3 (2 HSPs)
chr3 (49-106)||(21483757-21483811)
chr3 (57-128)||(7922807-7922876)
[»] chr1 (4 HSPs)
chr1 (49-110)||(39368450-39368509)
chr1 (49-121)||(41900987-41901057)
chr1 (49-124)||(37848130-37848203)
chr1 (78-110)||(45237834-45237866)
[»] chr6 (1 HSPs)
chr6 (49-110)||(34875834-34875895)


Alignment Details
Target: chr8 (Bit Score: 161; Significance: 1e-85; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 8779489 - 8779691
Alignment:
Q  17 tggccgaataacttttgaggaattacaagtccaagaaaatttttagacggattaaaacgaaaaaagttgaaatatttataaggataaaaaacatctttca 116  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8779489 tggccgaataacttttgaggaattacaagtcgaaaaaaatttttagacggactaaaacgaaaa-agttgaaatatttataaggataaaaaacatctttca 8779587  T
Q  117 ccttaaaatttatataaacagtttggtcaggttttgaaaaagaaatataaatttggtctaagtagttttcatgaaattacattcaattgcatcctataat 216  Q
    ||||||||||||| |||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  8779588 ccttaaaatttatttaaacactttggtcagattttgaaaaagaaatataaatttgatctaagtagttttcatgaaattacattcaattgcat-ctataat 8779686  T
Q  217 attca 221  Q
    |||||    
T  8779687 attca 8779691  T

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Target: chr8; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 292 - 409
Target Start/End: Original strand, 8779766 - 8779883
Alignment:
Q  292 tataactccaaccattctgaagaaaagtcaaagtatacaacaaagaagaagtaccaatacgccaacatgtagaagtctgaagacaaccccaaatgtaaga 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8779766 tataactccaaccattctgaagaaaagtcaaagtatacaacaaagaagaagtaccaatacgccaacatgtagaagtctgaagacaaccccaaatgcaaga 8779865  T
Q  392 agcatacgaacaaataag 409  Q
    ||||||||||||| ||||    
T  8779866 agcatacgaacaactaag 8779883  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 120
Target Start/End: Original strand, 5325093 - 5325162
Alignment:
Q  49 aagaaaatttttagacggattaaaacgaaaaaagttgaaatatttataaggataaaaaacatctttcacctt 120  Q
    ||||||||||||||| |||||||||||  ||||||||| ||||||||||| |  |||||||| ||| |||||    
T  5325093 aagaaaatttttagagggattaaaacg--aaaagttgatatatttataagaactaaaaacatatttaacctt 5325162  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 455 - 489
Target Start/End: Original strand, 8779902 - 8779936
Alignment:
Q  455 aatagagaccataatgcaagatttggaacaaagat 489  Q
    ||||||||||||||||||| |||||||||||||||    
T  8779902 aatagagaccataatgcaaaatttggaacaaagat 8779936  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 49 - 120
Target Start/End: Complemental strand, 34792895 - 34792826
Alignment:
Q  49 aagaaaatttttagacggattaaaacgaaaaaagttgaaatatttataaggataaaaaacatctttcacctt 120  Q
    ||||||| ||||| | ||| ||||||||||||  |||| |||||||||||||| |||||||| ||| |||||    
T  34792895 aagaaaaattttacagggactaaaacgaaaaa--ttgatatatttataaggatcaaaaacatattttacctt 34792826  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 49 - 121
Target Start/End: Complemental strand, 24518556 - 24518486
Alignment:
Q  49 aagaaaatttttagacggattaaaacgaaaaaagttgaaatatttataaggataaaaaacatctttcacctta 121  Q
    ||||||||||||||| ||||||||||  |||||||||| ||||||||| |||| |||||||| ||| ||||||    
T  24518556 aagaaaatttttagagggattaaaac--aaaaagttgatatatttatagggatcaaaaacatatttaacctta 24518486  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 8634099 - 8634150
Alignment:
Q  57 ttttagacggattaaaacgaaaaaagttgaaatatttataaggataaaaaacat 110  Q
    ||||||| |||||||||| |||||  |||| |||||||||||||||||||||||    
T  8634099 ttttagatggattaaaacaaaaaa--ttgacatatttataaggataaaaaacat 8634150  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 110
Target Start/End: Complemental strand, 44405605 - 44405550
Alignment:
Q  53 aaatttttagacggattaaaacgaaaaaagttgaaatatttataaggataaaaaacat 110  Q
    ||||||||||| ||||||||||||||||  |||  |||||||||||||| ||||||||    
T  44405605 aaatttttagagggattaaaacgaaaaa--ttggtatatttataaggattaaaaacat 44405550  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 130
Target Start/End: Original strand, 26402976 - 26403055
Alignment:
Q  49 aagaaaatttttagacggattaaaacgaaaaaagttgaaatatttataaggataaaaaacatctttcaccttaaaatttata 130  Q
    ||||||||||||||| ||| |||||||  ||||||||| ||||||||| |||  |||||||| ||| |||| ||||||||||    
T  26402976 aagaaaatttttagagggactaaaacg--aaaagttgacatatttatagggaccaaaaacatatttaacctaaaaatttata 26403055  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 10596634 - 10596693
Alignment:
Q  49 aagaaaatttttagacggattaaaacgaaaaaagttgaaatatttataaggataaaaaacat 110  Q
    |||||| |||||||| |||||||||||  ||||||||| ||||||||| |||| ||||||||    
T  10596634 aagaaattttttagagggattaaaacg--aaaagttgacatatttatagggatcaaaaacat 10596693  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 29963144 - 29963085
Alignment:
Q  49 aagaaaatttttagacggattaaaacgaaaaaagttgaaatatttataaggataaaaaacat 110  Q
    |||||| |||||||| ||| |||||||||||  ||||||||||||||| |||||||||||||    
T  29963144 aagaaattttttagagggactaaaacgaaaa--gttgaaatatttatagggataaaaaacat 29963085  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 7744735 - 7744794
Alignment:
Q  49 aagaaaatttttagacggattaaaacgaaaaaagttgaaatatttataaggataaaaaacat 110  Q
    ||||||||||||||| ||| ||||||||||||  |||| ||||||||| |||| ||||||||    
T  7744735 aagaaaatttttagagggactaaaacgaaaaa--ttgatatatttatagggatcaaaaacat 7744794  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 49 - 96
Target Start/End: Complemental strand, 35683394 - 35683349
Alignment:
Q  49 aagaaaatttttagacggattaaaacgaaaaaagttgaaatatttata 96  Q
    |||||| |||||||| ||||||||||||||||  ||||||||||||||    
T  35683394 aagaaattttttagagggattaaaacgaaaaa--ttgaaatatttata 35683349  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 106
Target Start/End: Complemental strand, 18724056 - 18724001
Alignment:
Q  51 gaaaatttttagacggattaaaacgaaaaaagttgaaatatttataaggataaaaa 106  Q
    ||||||||||| |  || |||||||||||||||||| |||||||||| ||||||||    
T  18724056 gaaaatttttaaagagactaaaacgaaaaaagttgatatatttataaagataaaaa 18724001  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 120
Target Start/End: Original strand, 4831558 - 4831626
Alignment:
Q  49 aagaaaatttttagacggattaaaacgaaaaaagttgaaatatttataaggataaaaaacatctttcacctt 120  Q
    ||||||||||||||| ||||||||    |||||||||| |||||||||||||  |||||||| ||| |||||    
T  4831558 aagaaaatttttagaaggattaaat---aaaaagttgatatatttataaggaccaaaaacatatttaacctt 4831626  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 32347803 - 32347721
Alignment:
Q  26 aacttttgaggaattacaagtccaagaaaatttttagacggattaaaacgaaaaaagttgaaatatttataaggataaaaaacat 110  Q
    ||||||||||| | || ||||| |||||| |||||||| ||||||||| |  ||||||||| ||||||||| |||  ||||||||    
T  32347803 aacttttgagggactaaaagtcaaagaaattttttagagggattaaaatg--aaaagttgacatatttatagggaccaaaaacat 32347721  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 21483811 - 21483757
Alignment:
Q  49 aagaaaatttttagacggattaaaacgaaaaaagttgaaatatttataaggataaaaa 106  Q
    ||||||||||| ||| | ||||||||  ||||||||||||||||||||||||||||||    
T  21483811 aagaaaattttaaga-gaattaaaac--aaaaagttgaaatatttataaggataaaaa 21483757  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 128
Target Start/End: Complemental strand, 7922876 - 7922807
Alignment:
Q  57 ttttagacggattaaaacgaaaaaagttgaaatatttataaggataaaaaacatctttcaccttaaaattta 128  Q
    ||||||| |||||||||||  ||||||||| ||||||||| ||| ||||||||| ||| ||| || ||||||    
T  7922876 ttttagagggattaaaacg--aaaagttgatatatttatagggacaaaaaacatatttaaccctagaattta 7922807  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 39368450 - 39368509
Alignment:
Q  49 aagaaaatttttagacggattaaaacgaaaaaagttgaaatatttataaggataaaaaacat 110  Q
    |||||| |||||| | ||| |||||||||||  ||||| |||||||||||||||||||||||    
T  39368450 aagaaattttttaaagggactaaaacgaaaa--gttgacatatttataaggataaaaaacat 39368509  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 121
Target Start/End: Complemental strand, 41901057 - 41900987
Alignment:
Q  49 aagaaaatttttagacggattaaaacgaaaaaagttgaaatatttataaggataaaaaacatctttcacctta 121  Q
    |||||||||||||||  || ||||||||||||  |||| |||||||||||||  |||||||| ||| ||||||    
T  41901057 aagaaaatttttagagagactaaaacgaaaaa--ttgatatatttataaggactaaaaacatatttaacctta 41900987  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 49 - 124
Target Start/End: Original strand, 37848130 - 37848203
Alignment:
Q  49 aagaaaatttttagacggattaaaacgaaaaaagttgaaatatttataaggataaaaaacatctttcaccttaaaa 124  Q
    |||||| |||||||| ||| |||||   |||||||||| |||||||||||||| |||||||| ||| ||| |||||    
T  37848130 aagaaattttttagagggactaaaat--aaaaagttgacatatttataaggatcaaaaacatatttaaccctaaaa 37848203  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 110
Target Start/End: Complemental strand, 45237866 - 45237834
Alignment:
Q  78 aaaagttgaaatatttataaggataaaaaacat 110  Q
    ||||||||| |||||||||||||||||||||||    
T  45237866 aaaagttgacatatttataaggataaaaaacat 45237834  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 34875895 - 34875834
Alignment:
Q  49 aagaaaatttttagacggattaaaacgaaaaaagttgaaatatttataaggataaaaaacat 110  Q
    ||||||||||||||| ||| || ||   |||||||||| |||||||||||||| ||||||||    
T  34875895 aagaaaatttttagaaggactataaaataaaaagttgacatatttataaggatcaaaaacat 34875834  T

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