View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13368_high_2 (Length: 239)
Name: NF13368_high_2
Description: NF13368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13368_high_2 |
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| [»] scaffold0286 (1 HSPs) |
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| [»] scaffold0254 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 126; Significance: 4e-65; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 13 - 222
Target Start/End: Original strand, 2162171 - 2162380
Alignment:
| Q |
13 |
atgaagcgacatatggcacaacttgaatggtacaaaatgaaaacaaaaaatcttgacatagggtactatgacagcttcaaaaacatgaacaagtcatctg |
112 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| | || |
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| T |
2162171 |
atgaagcgacatatggcgcaacttgaatggtacaaaatgaaaacaaaaaatcttgacatagggtactatgacagctacaaaaacaagaacgcacagtttg |
2162270 |
T |
|
| Q |
113 |
atattgatgttgttaactttcataaaaagctcacaatttattgggaaaagatggttgaagaagctgaactgaagcctcaaagagaaggcgctgcgtttcg |
212 |
Q |
| |
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|| |||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
2162271 |
atcatgatgttgttgtatttcataaaatactcacaaattattgggaaaagatggttgaagaagctgaactgaaacctcaaagagaaggcgctgcatttcg |
2162370 |
T |
|
| Q |
213 |
ttatcgctgg |
222 |
Q |
| |
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| |||||||| |
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|
| T |
2162371 |
taatcgctgg |
2162380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 13 - 222
Target Start/End: Original strand, 2168334 - 2168543
Alignment:
| Q |
13 |
atgaagcgacatatggcacaacttgaatggtacaaaatgaaaacaaaaaatcttgacatagggtactatgacagcttcaaaaacatgaacaagtcatctg |
112 |
Q |
| |
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|||| |||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||| |||| ||| ||| |
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| T |
2168334 |
atgaggcgacatatggcgcaacttgaatggtacagaaagaaaacaaaaaatcttgacatagggtactatgacagctacaaaaacaagaacgtatcagctg |
2168433 |
T |
|
| Q |
113 |
atattgatgttgttaactttcataaaaagc-tcacaatttattgggaaaagatggttgaagaagctgaactgaagcctcaaagagaaggcgctgcgtttc |
211 |
Q |
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|| ||| |||| | | | |||||||| ||| | ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
2168434 |
attatgaagttgattggtat-ttaaaaagcatcatatttttttgggaaaagatggttgaagaagctgatctgaagcctcaaagagaaggcgctgcatttc |
2168532 |
T |
|
| Q |
212 |
gttatcgctgg |
222 |
Q |
| |
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|| ||||||| |
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|
| T |
2168533 |
gtactcgctgg |
2168543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 13 - 222
Target Start/End: Original strand, 2179967 - 2180176
Alignment:
| Q |
13 |
atgaagcgacatatggcacaacttgaatggtacaaaatgaaaacaaaaaatcttgacatagggtactatgacagcttcaaaaacatgaacaagtcatctg |
112 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||| |||| ||| ||| |
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| T |
2179967 |
atgaggcgacatatggcgcaacttgaatggtacagaaagaaaacaaaaaatcttgacatagggtactatgacagctacaaaaacaagaacgtatcagctg |
2180066 |
T |
|
| Q |
113 |
atattgatgttgttaactttcataaaaagc-tcacaatttattgggaaaagatggttgaagaagctgaactgaagcctcaaagagaaggcgctgcgtttc |
211 |
Q |
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|| ||| |||| | | | |||||||| ||| | ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
2180067 |
attatgaagttgattggtat-ttaaaaagcatcatatttttttgggaaaagatggttgaagaagctgatctgaagcctcaaagagaaggcgctgcatttc |
2180165 |
T |
|
| Q |
212 |
gttatcgctgg |
222 |
Q |
| |
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|| ||||||| |
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|
| T |
2180166 |
gtactcgctgg |
2180176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 28 - 200
Target Start/End: Original strand, 2207218 - 2207390
Alignment:
| Q |
28 |
gcacaacttgaatggtacaaaatgaaaacaaaaaatcttgacatagggtactatgacagcttcaaaaacatgaacaagtcatctgatattgatgttgtta |
127 |
Q |
| |
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|||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||| | |||||||||| || | ||||||| |||||||||| |
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| T |
2207218 |
gcacaagttgaatggtacaaaaagaaaacaacaaatcttgacatagggtactatgacagttacaaaaacatgtacgaaatatctgattatgatgttgttg |
2207317 |
T |
|
| Q |
128 |
actttcataaaaagctcacaatttattgggaaaagatggttgaagaagctgaactgaagcctcaaagagaagg |
200 |
Q |
| |
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| ||||||||||||||||||| ||||||||| |||||||||||||| | |||| |||||||| ||| |||||| |
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| T |
2207318 |
agtttcataaaaagctcacaagttattgggagaagatggttgaagacgttgaaatgaagcctaaaaaagaagg |
2207390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 14935 - 14725
Alignment:
| Q |
13 |
atgaagcgacatatggcacaacttgaatggtacaaaat-gaaaacaaaaaat-cttgacatagggtactatgacagcttcaaaaacatgaacaagtcatc |
110 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||| |||| | |
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| T |
14935 |
atgaagcgacatatggcgcaacttgaatggtacaaaatagaaaacaaaaaatacttgacatagggtactatgacagctacaaaaacaagaacgcacagtt |
14836 |
T |
|
| Q |
111 |
tgatattgatgttgttaactttcataaaaagctcacaatttattgggaaaagatggttgaagaagctgaactgaagcctcaaagagaaggcgctgcgttt |
210 |
Q |
| |
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|||| |||||||||| |||||||||| ||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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|
| T |
14835 |
tgatcatgatgttgttgtatttcataaaatactcacaaattattggg-aaagatggttgaagaagctgaactgaaacctcaaagagaaggcgctgcattt |
14737 |
T |
|
| Q |
211 |
cgttatcgctgg |
222 |
Q |
| |
|
||| |||||||| |
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|
| T |
14736 |
cgtaatcgctgg |
14725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0254 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0254
Description:
Target: scaffold0254; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 2365 - 2154
Alignment:
| Q |
13 |
atgaagcgacatatggcacaacttgaatggtacaaaatgaaaacaaaaaatcttgacatagggtactatgacagcttcaaaaacatgaacaagtcatctg |
112 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||| |||| ||| ||| |
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|
| T |
2365 |
atgaggcgacatatggcgcaacttgaatggtacagaaagaaaacaaaaaatcttgacatagggtactatgacagctacaaaaacaagaacgtatcagctg |
2266 |
T |
|
| Q |
113 |
atattgatgttgttaactttcataaaaagc-tca-caatttattgggaaaagatggttgaagaagctgaactgaagcctcaaagagaaggcgctgcgttt |
210 |
Q |
| |
|
|| ||| |||| | | |||||||| ||| | ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
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|
| T |
2265 |
attatgaagttgattggtaatttaaaaagcatcattatttttttgggaaaagatggttgaagaagctgatctgaagcctcaaagagaaggcgctgcattt |
2166 |
T |
|
| Q |
211 |
cgttatcgctgg |
222 |
Q |
| |
|
||| ||||||| |
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|
| T |
2165 |
cgtactcgctgg |
2154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 117 - 192
Target Start/End: Complemental strand, 19488225 - 19488151
Alignment:
| Q |
117 |
tgatgttgttaactttcataaaaagctcacaatttattgggaaaagatggttgaagaagctgaactgaagcctcaa |
192 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||||||||| || |||||||||| |||| ||||||||||| |
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|
| T |
19488225 |
tgatgttgttgagtttcataaaaagctcacaatttattgggaaaa-atagttgaagaagttgaaatgaagcctcaa |
19488151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 213
Target Start/End: Complemental strand, 27785342 - 27785152
Alignment:
| Q |
23 |
atatggcacaacttgaatggtacaaaatgaaaacaaaaaatcttgacatagggtactatgacagcttcaaaaacatgaacaagtcatctgatattgatgt |
122 |
Q |
| |
|
||||||| ||||||||||||||||||| |||| | || ||| | |||||||| |||||||||||||||||||||||| | ||| |||||| |
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|
| T |
27785342 |
atatggcccaacttgaatggtacaaaaagaaatctaagaatgaacaaatagggtattatgacagcttcaaaaacatgaactttcccgatgactatgatgt |
27785243 |
T |
|
| Q |
123 |
tgttaactttcataaaaagctcacaatttattgggaaaagatggttgaagaagctgaactgaagcctcaaagagaaggcgctgcgtttcgt |
213 |
Q |
| |
|
| | | || ||||||| |||||| |||||||||| |||||||||||||||||||| |||||||||||| |||||| || || |||||| |
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|
| T |
27785242 |
taatcaattccataaaaggctcaccttttattgggagaagatggttgaagaagctgagatgaagcctcaaaaagaaggtgcagcttttcgt |
27785152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 103
Target Start/End: Complemental strand, 27781444 - 27781362
Alignment:
| Q |
21 |
acatatggcacaacttgaatggtacaaaatgaaaacaaaaaatcttgacatagggtactatgacagcttcaaaaacatgaaca |
103 |
Q |
| |
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||||||||| ||||||||||||| ||||||| ||| || |||| | ||||||||||||||||||| |||||| ||||||| |
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|
| T |
27781444 |
acatatggcccaacttgaatggttcaaaatggcaactaagaatcaacaaatagggtactatgacagctacaaaaatatgaaca |
27781362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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