View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13368_high_3 (Length: 202)
Name: NF13368_high_3
Description: NF13368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13368_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 12 - 183
Target Start/End: Original strand, 39641987 - 39642158
Alignment:
| Q |
12 |
aagcaaaggcaaacccgaaaatatagaaaaagaggccgcctgtggctgcatcaagaacattggttaacataatattcatggtgtttttggcacgaacgga |
111 |
Q |
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| T |
39641987 |
aagcaaaggcaaacccgaaaatatagaaaaagatgccgcctgtggctgcatcaagaacattggttaacataatattcatggtgtttttggcacgaacgga |
39642086 |
T |
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| Q |
112 |
acctgcacaaagcatggcaaaaccgagttgcatggcaaaaacaaggtaagaagagaagagaaggtaggtgtt |
183 |
Q |
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| T |
39642087 |
acctgcacaaagcatggcaaaaccgagttgcatggcaaaaacaaggtaagaagagaagagaaggtaggtgtt |
39642158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 59 - 183
Target Start/End: Original strand, 46670231 - 46670355
Alignment:
| Q |
59 |
gcatcaagaacattggttaacataatattcatggtgtttttggcacgaacggaacctgcacaaagcatggcaaaaccgagttgcatggcaaaaacaaggt |
158 |
Q |
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| T |
46670231 |
gcatcaagaacattggttaacataatgttcatagtgtttttggcacgaacagaaccggcacaaagcatagcaaaacctagttgcatggcaaaaacaaggt |
46670330 |
T |
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| Q |
159 |
aagaagagaagagaaggtaggtgtt |
183 |
Q |
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| T |
46670331 |
aagctgagaatagaaggtaagtgtt |
46670355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 65 - 183
Target Start/End: Original strand, 17091317 - 17091435
Alignment:
| Q |
65 |
agaacattggttaacataatattcatggtgtttttggcacgaacggaacctgcacaaagcatggcaaaaccgagttgcatggcaaaaacaaggtaagaag |
164 |
Q |
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| T |
17091317 |
agaacatttgtgagcatgatgttcatggtgttcttagcacgaactgaaccagcacagagcatggcaaaaccaagttgcatagagaagacaaggtaagctg |
17091416 |
T |
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| Q |
165 |
agaagagaaggtaggtgtt |
183 |
Q |
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| T |
17091417 |
agaataaaagataggtgtt |
17091435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 183
Target Start/End: Original strand, 35416308 - 35416429
Alignment:
| Q |
62 |
tcaagaacattggttaacataatattcatggtgtttttggcacgaacggaacctgcacaaagcatggcaaaaccgagttgcatggcaaaaacaaggtaag |
161 |
Q |
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| T |
35416308 |
tcaaggacattggtgagcatgatgttcatagtgtttttggctcgaacggagccagcgcagagcatagcgaaaccaagctgcatggcaaagactaaataag |
35416407 |
T |
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| Q |
162 |
aagagaagagaaggtaggtgtt |
183 |
Q |
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| T |
35416408 |
ctgagaagagaaggtaggtgtt |
35416429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 177
Target Start/End: Original strand, 25545082 - 25545202
Alignment:
| Q |
57 |
ctgcatcaagaacattggttaacataatattcatggtgtttttggcacgaacggaacctgcacaaagcatggcaaaaccgagttgcatggcaaaaacaag |
156 |
Q |
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| T |
25545082 |
ctgcatcaactacattggtgagcattatgttcatggcatttttggcacggacagatcctgcacatatcatggcaaagcctagttgcattacaaagactaa |
25545181 |
T |
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| Q |
157 |
gtaagaagagaagagaaggta |
177 |
Q |
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||| | ||||||||||||||| |
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| T |
25545182 |
gtaggtagagaagagaaggta |
25545202 |
T |
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