View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13368_low_2 (Length: 375)
Name: NF13368_low_2
Description: NF13368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13368_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 19 - 367
Target Start/End: Original strand, 37876511 - 37876859
Alignment:
| Q |
19 |
aactaggtccaggccaaagcatgcttcttcggtaaagagttgaaagtgatattccatgtttccatgtgctgcaaagaaaccacataagattatatcaata |
118 |
Q |
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| T |
37876511 |
aactaggtccaggccaaagcatgcttcttcggtaaagagttgaaagtgatattccatgtttccatgtgctgcaaagaaaccacataagattatatcaata |
37876610 |
T |
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| Q |
119 |
aaatcaacaagattttgaaacttcaaaacacaacagcataatcttgtgtccttcaaaaaccttaatccaaaactacctgtacatcattaaccatttcttc |
218 |
Q |
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| T |
37876611 |
aactcaacaagattttgaaacttcaaaacacaacagcataatcttgtgtccttcaaaaaccttaatccaaaactacctgtacatcattaaccatttcttc |
37876710 |
T |
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| Q |
219 |
ctatgaattaaagccggaagtgcatcataaaccacattcctcaaactattcgaaatcaacattgaaggttcggataattccggcaaatgatcaacaacca |
318 |
Q |
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| T |
37876711 |
ccatgaattaaagccggaagtgcatcataaaccacattcctcaaactattcgaaatcaacattgaaggttccgataattccggcaaatgatcaacaacca |
37876810 |
T |
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| Q |
319 |
aaggcacactaggaacctctttcaacgacggttgaatacatttcatctc |
367 |
Q |
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| T |
37876811 |
aaggcacactaggaacctctttcaaagacggttgaatacatttcatctc |
37876859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 39549228 - 39549295
Alignment:
| Q |
26 |
tccaggccaaagcatgcttcttcggtaaagagttgaaagtgatattccatgtttccatgtgctgcaaa |
93 |
Q |
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| T |
39549228 |
tccaggccataacatgcttctccggtaaagagttgaaagtgatataccattcctccaagtgctgcaaa |
39549295 |
T |
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