View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13368_low_3 (Length: 282)
Name: NF13368_low_3
Description: NF13368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13368_low_3 |
 | |
|
| [»] chr3 (30 HSPs) |
| |
|
| [»] scaffold0002 (2 HSPs) |
| | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
| [»] chr4 (4 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 30)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 282
Target Start/End: Original strand, 10126775 - 10127044
Alignment:
| Q |
13 |
ccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgctatcgcatagagacacaatccgta |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| || || |
|
|
| T |
10126775 |
ccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgctatctcagagagacacatcccata |
10126874 |
T |
|
| Q |
113 |
ataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttga |
212 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10126875 |
ataatataggtgttgttgcaattttgggcatgggaggtttgggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttga |
10126974 |
T |
|
| Q |
213 |
tttgaaggcatggacttgtgtgtctgaggatttcaatattacgagagtaaccaagtctctgcttgaatct |
282 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||| ||||||||| |||||||| ||||||||| |
|
|
| T |
10126975 |
tttgaaggcatgggtttgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatct |
10127044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 282
Target Start/End: Original strand, 10663373 - 10663642
Alignment:
| Q |
13 |
ccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgctatcgcatagagacacaatccgta |
112 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||| || || |
|
|
| T |
10663373 |
ccttcaagttcagtggtaaatgaatctctcatggtgggtaggaagggtgacaaagagacaataatgaacatgttgctatcacagagagacacaacccata |
10663472 |
T |
|
| Q |
113 |
ataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttga |
212 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10663473 |
ataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttga |
10663572 |
T |
|
| Q |
213 |
tttgaaggcatggacttgtgtgtctgaggatttcaatattacgagagtaaccaagtctctgcttgaatct |
282 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||| ||||||||| |||||||| ||||||||| |
|
|
| T |
10663573 |
tttgaaggcatgggtttgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatct |
10663642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 7 - 281
Target Start/End: Original strand, 11769075 - 11769349
Alignment:
| Q |
7 |
agaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgctatcgcatagagacacaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
11769075 |
agaacaccttcaagttcagtggtaaatgaatctgtcatagtgggtaggaagaatgacaaagagacaataatgaacatgttgctatcacagagagacacaa |
11769174 |
T |
|
| Q |
107 |
tccgtaataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaaca |
206 |
Q |
| |
|
||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| | |
|
|
| T |
11769175 |
tccataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgctcaacttgtctacaatgataaagaagttcaacaata |
11769274 |
T |
|
| Q |
207 |
ttttgatttgaaggcatggacttgtgtgtctgaggatttcaatattacgagagtaaccaagtctctgcttgaatc |
281 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||| |||||| ||||||||||| |||||| |||||||| |
|
|
| T |
11769275 |
ttttgatttgaaggcatgggcttgcgtgtctgaggattttgatattatgagagtaaccaggtctctccttgaatc |
11769349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 282
Target Start/End: Original strand, 10031850 - 10032119
Alignment:
| Q |
13 |
ccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgctatcgcatagagacacaatccgta |
112 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| || || || |
|
|
| T |
10031850 |
ccttcaagttcagtggtaaatgaatctctcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgctatcacagagagacgcatcccata |
10031949 |
T |
|
| Q |
113 |
ataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttga |
212 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10031950 |
ataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttga |
10032049 |
T |
|
| Q |
213 |
tttgaaggcatggacttgtgtgtctgaggatttcaatattacgagagtaaccaagtctctgcttgaatct |
282 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||| |||||| ||||||||| |||||||| ||||||||| |
|
|
| T |
10032050 |
tttgaaggcctgggcttgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatct |
10032119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 7 - 282
Target Start/End: Complemental strand, 10364026 - 10363751
Alignment:
| Q |
7 |
agaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgctatcgcatagagacacaa |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||| |||| |
|
|
| T |
10364026 |
agaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgctttcaaagagagaaacaa |
10363927 |
T |
|
| Q |
107 |
tccgtaataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaaca |
206 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10363926 |
ccgacaataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaaca |
10363827 |
T |
|
| Q |
207 |
ttttgatttgaaggcatggacttgtgtgtctgaggatttcaatattacgagagtaaccaagtctctgcttgaatct |
282 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||| |||||| ||||||||| |||||||| ||||||||| |
|
|
| T |
10363826 |
ttttgatttgaaggcatgggtttgtgtctctgaggattttgatattatgagagtaacaaagtctctccttgaatct |
10363751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 13 - 281
Target Start/End: Original strand, 10260545 - 10260813
Alignment:
| Q |
13 |
ccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgctatcgcatagagacacaatccgta |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||| | | |
|
|
| T |
10260545 |
ccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgctatcacagagagaaacaaccaaca |
10260644 |
T |
|
| Q |
113 |
ataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttga |
212 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10260645 |
ataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgctcaacttgtttacaatgataaagaagttcaacaacattttga |
10260744 |
T |
|
| Q |
213 |
tttgaaggcatggacttgtgtgtctgaggatttcaatattacgagagtaaccaagtctctgcttgaatc |
281 |
Q |
| |
|
||||||| ||| ||||||||||||||||||| |||||| |||||||||||||||||| |||||||| |
|
|
| T |
10260745 |
catgaaggcgtgggcttgtgtgtctgaggattttgatattatgagagtaaccaagtctctccttgaatc |
10260813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 282
Target Start/End: Original strand, 10184089 - 10184358
Alignment:
| Q |
13 |
ccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgctatcgcatagagacacaatccgta |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||| || || |
|
|
| T |
10184089 |
ccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgctgtcacagagagacacaacccata |
10184188 |
T |
|
| Q |
113 |
ataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttga |
212 |
Q |
| |
|
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10184189 |
atgctataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgctcaacttgtttacaatgataaagaagttcaacaacattttga |
10184288 |
T |
|
| Q |
213 |
tttgaaggcatggacttgtgtgtctgaggatttcaatattacgagagtaaccaagtctctgcttgaatct |
282 |
Q |
| |
|
| ||| ||| ||| |||||||||| |||||||| |||||| |||||||||||||||||| ||||||||| |
|
|
| T |
10184289 |
tatgagggcgtgggcttgtgtgtccgaggattttgatattatgagagtaaccaagtctctccttgaatct |
10184358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 7 - 282
Target Start/End: Original strand, 10088631 - 10088906
Alignment:
| Q |
7 |
agaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgctatcgcatagagacacaa |
106 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || | ||||| |||| |
|
|
| T |
10088631 |
agaactccttcaagttcggtggtaaatgaatctgtcatggtgggtaggaaggatgataaagagacaataatgaacatgttgctttcaaagagagaaacaa |
10088730 |
T |
|
| Q |
107 |
tccgtaataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaaca |
206 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
10088731 |
ccgacaataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacacca |
10088830 |
T |
|
| Q |
207 |
ttttgatttgaaggcatggacttgtgtgtctgaggatttcaatattacgagagtaaccaagtctctgcttgaatct |
282 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||| ||||||||| |||||||| ||||||||| |
|
|
| T |
10088831 |
ttttgatttgaaggcatgggtttgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatct |
10088906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 7 - 282
Target Start/End: Original strand, 10195514 - 10195789
Alignment:
| Q |
7 |
agaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgctatcgcatagagacacaa |
106 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| || | ||||| |||| |
|
|
| T |
10195514 |
agaactccttcaagttcagtggtaaatgaatctgtcatggtgggtagaaaggatgataaagagacaataatgaacatgttgctttcaaagagagaaacaa |
10195613 |
T |
|
| Q |
107 |
tccgtaataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaaca |
206 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
10195614 |
ccgacaataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacacca |
10195713 |
T |
|
| Q |
207 |
ttttgatttgaaggcatggacttgtgtgtctgaggatttcaatattacgagagtaaccaagtctctgcttgaatct |
282 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||| ||||||||| |||||||| ||||||||| |
|
|
| T |
10195714 |
ttttgatttgaaggcatgggtttgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatct |
10195789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 7 - 281
Target Start/End: Original strand, 9838702 - 9838976
Alignment:
| Q |
7 |
agaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgctatcgcatagagacacaa |
106 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
9838702 |
agaacaccttctagttcaggggtaaatgaatctgtcgtggtgggtaggaagggtgacaaagagacaataatgaacatgttgctatctcaaagagacacaa |
9838801 |
T |
|
| Q |
107 |
tccgtaataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaaca |
206 |
Q |
| |
|
|| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
9838802 |
cccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgatgaagaagttcaacaaca |
9838901 |
T |
|
| Q |
207 |
ttttgatttgaaggcatggacttgtgtgtctgaggatttcaatattacgagagtaaccaagtctctgcttgaatc |
281 |
Q |
| |
|
||||||| ||| ||| ||| ||||||||||||||||||| ||||| |||||||||||||||||| |||||||| |
|
|
| T |
9838902 |
ttttgatatgagggcgtgggcttgtgtgtctgaggattttgatattttgagagtaaccaagtctctccttgaatc |
9838976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 7 - 281
Target Start/End: Original strand, 9849580 - 9849854
Alignment:
| Q |
7 |
agaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgctatcgcatagagacacaa |
106 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
9849580 |
agaacaccttctagttcaggggtaaatgaatctgtcgtggtgggtaggaagggtgacaaagagacaataatgaacatgttgctatctcaaagagacacaa |
9849679 |
T |
|
| Q |
107 |
tccgtaataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaaca |
206 |
Q |
| |
|
|| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
9849680 |
cccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgatgaagaagttcaacaaca |
9849779 |
T |
|
| Q |
207 |
ttttgatttgaaggcatggacttgtgtgtctgaggatttcaatattacgagagtaaccaagtctctgcttgaatc |
281 |
Q |
| |
|
||||||| ||| ||| ||| ||||||||||||||||||| ||||| |||||||||||||||||| |||||||| |
|
|
| T |
9849780 |
ttttgatatgagggcgtgggcttgtgtgtctgaggattttgatattttgagagtaaccaagtctctccttgaatc |
9849854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 8 - 282
Target Start/End: Original strand, 10580443 - 10580717
Alignment:
| Q |
8 |
gaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgctatcgcatagagacacaat |
107 |
Q |
| |
|
|||| ||||||||||| ||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||| |
|
|
| T |
10580443 |
gaactccttcaagttctgtgtttaacgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgctatcacagagaaacacaat |
10580542 |
T |
|
| Q |
108 |
ccgtaataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacat |
207 |
Q |
| |
|
|| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10580543 |
ccataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacat |
10580642 |
T |
|
| Q |
208 |
tttgatttgaaggcatggacttgtgtgtctgaggatttcaatattacgagagtaaccaagtctctgcttgaatct |
282 |
Q |
| |
|
||||| ||||||| ||| |||||||||||||||||| |||||| ||||||||| |||||||| ||||||||| |
|
|
| T |
10580643 |
tttgacatgaaggcgtgggtttgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatct |
10580717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 7 - 281
Target Start/End: Complemental strand, 10376073 - 10375799
Alignment:
| Q |
7 |
agaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgctatcgcatagagacacaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||| | | ||||||| |
|
|
| T |
10376073 |
agaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgataaagacactataatgaacatgttgctatcagagacagacacat |
10375974 |
T |
|
| Q |
107 |
tccgtaataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaaca |
206 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||| |
|
|
| T |
10375973 |
cgcataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcacaacttgtttacaatgatgaaaaagttcaacaaca |
10375874 |
T |
|
| Q |
207 |
ttttgatttgaaggcatggacttgtgtgtctgaggatttcaatattacgagagtaaccaagtctctgcttgaatc |
281 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||| |||||||| |
|
|
| T |
10375873 |
ttttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaaccaagtctctccttgaatc |
10375799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 13 - 281
Target Start/End: Complemental strand, 10434266 - 10433998
Alignment:
| Q |
13 |
ccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgctatcgcatagagacacaatccgta |
112 |
Q |
| |
|
||||||||||| ||||| ||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||| || ||| |||||| | || |
|
|
| T |
10434266 |
ccttcaagttctgtggtcaatgaatctttcatggttggaaggaaggatgacaaagagacaataatgaacatgttgctatcacagagaaacacaactcata |
10434167 |
T |
|
| Q |
113 |
ataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttga |
212 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10434166 |
ataagataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaccattttga |
10434067 |
T |
|
| Q |
213 |
tttgaaggcatggacttgtgtgtctgaggatttcaatattacgagagtaaccaagtctctgcttgaatc |
281 |
Q |
| |
|
||||||||| ||| ||||||||||| ||||||| ||||| || ||||||||||||||| |||||||| |
|
|
| T |
10434066 |
tttgaaggcctgggcttgtgtgtctcaggattttgatattttgaaagtaaccaagtctctccttgaatc |
10433998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 7 - 281
Target Start/End: Original strand, 10077110 - 10077384
Alignment:
| Q |
7 |
agaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgctatcgcatagagacacaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |||| | || ||||||||||||||||||||||||||||||||| | | | || |
|
|
| T |
10077110 |
agaacaccttcaagttcagtggtaaatgaatctgagatggttggtatggagcgtgacaaagagacaataatgaacatgttgctatcagggatgggcggaa |
10077209 |
T |
|
| Q |
107 |
tccgtaataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaaca |
206 |
Q |
| |
|
|| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| | | || |
|
|
| T |
10077210 |
cccataataagataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgattataaagttcgatacca |
10077309 |
T |
|
| Q |
207 |
ttttgatttgaaggcatggacttgtgtgtctgaggatttcaatattacgagagtaaccaagtctctgcttgaatc |
281 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||| |||||| |||||||||||||||||| |||||||| |
|
|
| T |
10077310 |
ttttgatttgcaggcatgggcttgtgtgtctgaggattttgatattatgagagtaaccaagtctctccttgaatc |
10077384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 7 - 282
Target Start/End: Complemental strand, 11131254 - 11130979
Alignment:
| Q |
7 |
agaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgctatcgcatagagacacaa |
106 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||| ||||||| ||||| |||||||||||||||||||||| ||||||||||||||| | || ||| | |
|
|
| T |
11131254 |
agaacaccttctagttctgtggttaatgaatcattcatggttggtagaaaggatgacaaagagacaataacgaacatgttgctatcaaagagcagcacta |
11131155 |
T |
|
| Q |
107 |
tccgtaataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaaca |
206 |
Q |
| |
|
| ||| ||||| |||||||||||||||||||| ||||||||| | |||||||| |||||||| ||| ||| |||||||||| || |||||||| |||| |
|
|
| T |
11131154 |
gcaataacaatatcggtgttgttgcaattttaggtatgggaggtgtcggaaaaacaacccttgcacaaattgcttacaatgatgaaaaagttcaagaaca |
11131055 |
T |
|
| Q |
207 |
ttttgatttgaaggcatggacttgtgtgtctgaggatttcaatattacgagagtaaccaagtctctgcttgaatct |
282 |
Q |
| |
|
|||||| | || |||||| ||||||| || |||||||| ||||| |||||||| || |||| ||||||||| |
|
|
| T |
11131054 |
ctttgatctcaaagcatgggcttgtgtatcggaggattttgatattttaagagtaactaaaactctccttgaatct |
11130979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 7 - 245
Target Start/End: Original strand, 10889147 - 10889385
Alignment:
| Q |
7 |
agaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgctatcgcatagagacacaa |
106 |
Q |
| |
|
||||| |||||||||||||| || ||||||||||||||||| ||||| || ||||| ||||||||||||||||||||||||||||| | || ||| | |
|
|
| T |
10889147 |
agaaccccttcaagttcagtagttaatgaatctgtcatggttggtagaaatgatgataaagagacaataatgaacatgttgctatcagagagcagcacta |
10889246 |
T |
|
| Q |
107 |
tccgtaataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaaca |
206 |
Q |
| |
|
||| ||||| |||||||||||||||||||| ||||||||| | || ||||| || ||||| |||||||||||||||||| || |||||||| | || |
|
|
| T |
10889247 |
ggaataacaatatcggtgttgttgcaattttaggtatgggaggtgtcggtaaaacgacacttgcacaacttgtttacaatgatgaaaaagttcaagagca |
10889346 |
T |
|
| Q |
207 |
ttttgatttgaaggcatggacttgtgtgtctgaggattt |
245 |
Q |
| |
|
|||||| | || |||||| ||||||| ||||||||||| |
|
|
| T |
10889347 |
ctttgatctcaaagcatgggcttgtgtatctgaggattt |
10889385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 7 - 245
Target Start/End: Complemental strand, 11160245 - 11160007
Alignment:
| Q |
7 |
agaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgctatcgcatagagacacaa |
106 |
Q |
| |
|
||||| |||||||||||||| || |||| |||||||||||| ||||| || ||||| ||||||||||||||||||||||||||||| | || ||| |
|
|
| T |
11160245 |
agaaccccttcaagttcagtagttaatgcatctgtcatggttggtagaaatgatgataaagagacaataatgaacatgttgctatcagagagtagcactg |
11160146 |
T |
|
| Q |
107 |
tccgtaataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaaca |
206 |
Q |
| |
|
| ||| |||||||| ||||||||||||||||| ||||||||| | || ||||| || ||||| ||||||||||||||| || || |||||||| | || |
|
|
| T |
11160145 |
gcaataacaatataggcgttgttgcaattttaggtatgggaggtgtcggtaaaacgacacttgcacaacttgtttacaataatgaaaaagttcaagatca |
11160046 |
T |
|
| Q |
207 |
ttttgatttgaaggcatggacttgtgtgtctgaggattt |
245 |
Q |
| |
|
||||||||| || |||||| ||||||| ||||||||||| |
|
|
| T |
11160045 |
ttttgatttcaaagcatgggcttgtgtatctgaggattt |
11160007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 7 - 282
Target Start/End: Complemental strand, 11149082 - 11148807
Alignment:
| Q |
7 |
agaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgctatcgcatagagacacaa |
106 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||| ||||||| ||||| |||||||||||||||| ||||| ||||||||||||||| | || ||| | |
|
|
| T |
11149082 |
agaacaccttctagttctgtggttaatgaatcattcatggttggtagaaaggatgacaaagagataataacgaacatgttgctatcaaagagcagcacta |
11148983 |
T |
|
| Q |
107 |
tccgtaataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaaca |
206 |
Q |
| |
|
| ||| ||||| |||||||||||||||||||| ||||||||| | |||||||| |||||||| ||| ||| |||||||||| || |||||||| |||| |
|
|
| T |
11148982 |
gcaataacaatatcggtgttgttgcaattttaggtatgggaggtgtcggaaaaacaacccttgcacaaattgcttacaatgatgaaaaagttcaagaaca |
11148883 |
T |
|
| Q |
207 |
ttttgatttgaaggcatggacttgtgtgtctgaggatttcaatattacgagagtaaccaagtctctgcttgaatct |
282 |
Q |
| |
|
|||||| | || |||||| ||||||| || |||||||| ||||| |||||||| || |||| ||||||||| |
|
|
| T |
11148882 |
ctttgatctcaaagcatgggcttgtgtatcggaggattttgatattttaagagtaactaaaactctccttgaatct |
11148807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 245
Target Start/End: Original strand, 8861127 - 8861365
Alignment:
| Q |
7 |
agaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgctatcgcatagagacacaa |
106 |
Q |
| |
|
||||| |||||||||||||| || ||||||||||||||||| ||||| || ||||| ||||||||| ||||||||||||||||||| | || ||| | |
|
|
| T |
8861127 |
agaaccccttcaagttcagtagttaatgaatctgtcatggttggtagaaatgatgataaagagacagtaatgaacatgttgctatcagagagcagcacta |
8861226 |
T |
|
| Q |
107 |
tccgtaataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaaca |
206 |
Q |
| |
|
||| ||||| |||||||||||||||||||| ||||||||| | || ||||| || ||||| |||||||||||||||||| || |||||||| | || |
|
|
| T |
8861227 |
ggaataacaatatcggtgttgttgcaattttaggtatgggaggtgtcggtaaaacgacacttgcacaacttgtttacaatgatgaaaaagttcaagagca |
8861326 |
T |
|
| Q |
207 |
ttttgatttgaaggcatggacttgtgtgtctgaggattt |
245 |
Q |
| |
|
|||||| | || |||||| ||||||| || |||||||| |
|
|
| T |
8861327 |
ctttgatctcaaagcatgggcttgtgtatcagaggattt |
8861365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 7 - 282
Target Start/End: Original strand, 10500394 - 10500672
Alignment:
| Q |
7 |
agaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgctatcgcatagagacacaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| | | | | || |||||| |||| ||| | ||| |
|
|
| T |
10500394 |
agaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaatgatgataaagatagactcgtcaatatgttggtatcagatattggaacag |
10500493 |
T |
|
| Q |
107 |
tccg---taataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaaca |
203 |
Q |
| |
|
| | ||||||| ||||||||||||||||||| || |||||||| | || ||||| || ||||| |||||||||||||| || | || || || | |
|
|
| T |
10500494 |
gcagaaataataatttaggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaacgacgataaaattgaaga |
10500593 |
T |
|
| Q |
204 |
acattttgatttgaaggcatggacttgtgtgtctgaggatttcaatattacgagagtaaccaagtctctgcttgaatct |
282 |
Q |
| |
|
|||||||||| |||||||||||| |||||| | ||||||||| || || |||| ||||||| ||||| ||||||||| |
|
|
| T |
10500594 |
acattttgatctgaaggcatggatttgtgtaccggaggatttcgatgttgtgagaataaccaaatctctccttgaatct |
10500672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 6 - 252
Target Start/End: Original strand, 13343929 - 13344175
Alignment:
| Q |
6 |
aagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgctatcgcatagagacaca |
105 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||| ||||||| | | || | |||||| |||| | || | ||| |
|
|
| T |
13343929 |
aagaacaccttcaagttcaatggtaaatgaatctgttatggttggtaggaaggatgataaagagagactcattagtatgttgatatctgacagtggcact |
13344028 |
T |
|
| Q |
106 |
atccgtaataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaac |
205 |
Q |
| |
|
| | || || ||| ||||| ||||||||||| || ||||| ||| | || ||||| || |||||||||||| |||| |||||||||||||||||| | | |
|
|
| T |
13344029 |
accaatagtagtattggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagacc |
13344128 |
T |
|
| Q |
206 |
attttgatttgaaggcatggacttgtgtgtctgaggatttcaatatt |
252 |
Q |
| |
|
|||||||| |||| | ||| |||||| || ||||||||| ||||| |
|
|
| T |
13344129 |
attttgatctgaaagtctgggtttgtgtatcggaggatttcgatatt |
13344175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 282
Target Start/End: Original strand, 10527176 - 10527453
Alignment:
| Q |
7 |
agaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaaga-gacaataatgaacatgttgctatcgcatagagacaca |
105 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| ||| | || || |||||| |||| | | | ||| |
|
|
| T |
10527176 |
agaaccccttcaagttcagtggtaaatgaatctgtcattgtgggtaggaatgatgataaagatgac--tcatcaatatgttggtatcagactgtggcacc |
10527273 |
T |
|
| Q |
106 |
atccgtaataata---taggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaac |
202 |
Q |
| |
|
| | ||||||| |||||||||||||||| || || ||||||||| | || ||||| |||||||| |||||||||||||||||| || | ||| ||| |
|
|
| T |
10527274 |
agtagaaataataatttaggtgttgttgcaatcttgggtatgggaggtgtcggtaaaacaacccttgcacaacttgtttacaatgatgaaaaggttgaac |
10527373 |
T |
|
| Q |
203 |
aacattttgatttgaaggcatggacttgtgtgtctgaggatttcaatattacgagagtaaccaagtctctgcttgaatct |
282 |
Q |
| |
|
| ||||||||| | ||||| ||| || ||| || ||||||||| || || |||||||||||||||||| |||||||| |
|
|
| T |
10527374 |
accattttgatctcaaggcctgggtttatgtatcagaggatttcgatgttgtgagagtaaccaagtctctcattgaatct |
10527453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 6 - 263
Target Start/End: Original strand, 13170871 - 13171128
Alignment:
| Q |
6 |
aagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgctatcgcatagagacaca |
105 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||| ||||| || ||||||||||| ||||||| | | || | |||||| |||| | || | ||| |
|
|
| T |
13170871 |
aagaacgccttcaagttcaatggtaaatgaatctgttatggttggaaggaaggatgataaagagagactcattagtatgttgatatctgacagtggcact |
13170970 |
T |
|
| Q |
106 |
atccgtaataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaac |
205 |
Q |
| |
|
| | || || ||| ||||| ||||||||||| || ||||| ||| | || ||||| || |||||||||||| |||| |||||||||||||||||| | | |
|
|
| T |
13170971 |
accaatagtagtattggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagacc |
13171070 |
T |
|
| Q |
206 |
attttgatttgaaggcatggacttgtgtgtctgaggatttcaatattacgagagtaac |
263 |
Q |
| |
|
|||||||| |||| | ||| |||||| || ||||||||| ||||| ||||||||| |
|
|
| T |
13171071 |
attttgatctgaaagtctgggtttgtgtatcggaggatttcgatattctgagagtaac |
13171128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 263
Target Start/End: Original strand, 13332745 - 13333001
Alignment:
| Q |
7 |
agaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgctatcgcatagagacacaa |
106 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||| ||||| |||||||||||||| ||||||| | | || | |||||| |||| | || | ||| | |
|
|
| T |
13332745 |
agaacgccttcaagttcaatggtaaatgaatctgttatggttggtaggaaggatgataaagagagactcattagtatgttgatatctgacagtggcacta |
13332844 |
T |
|
| Q |
107 |
tccgtaataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaaca |
206 |
Q |
| |
|
| || || | | ||||| ||||||||||| || ||||| ||| | || ||||| || |||||||||||| |||| |||||||||||||||||| | || |
|
|
| T |
13332845 |
ccaatagtagtgttggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagacca |
13332944 |
T |
|
| Q |
207 |
ttttgatttgaaggcatggacttgtgtgtctgaggatttcaatattacgagagtaac |
263 |
Q |
| |
|
||||||| |||| | ||| |||||| || ||||||||| ||||| ||||||||| |
|
|
| T |
13332945 |
ttttgatctgaaagtctgggtttgtgtatcggaggatttcgatattctgagagtaac |
13333001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 263
Target Start/End: Original strand, 13160820 - 13161077
Alignment:
| Q |
6 |
aagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgctatcgcatagagacaca |
105 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||| ||||| |||||||||||||| || |||| | | | | |||||| |||| | || | ||| |
|
|
| T |
13160820 |
aagaacgccttcaagttcaatggtaaatgaatctgttatggttggtaggaaggatgataaggagagactcgttagtatgttgatatctgacagtggcact |
13160919 |
T |
|
| Q |
106 |
atccgtaataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaac |
205 |
Q |
| |
|
| | || || ||| ||||| ||||||||||| || ||||| ||| | || ||||| || |||||||||||| |||| |||||||||||||||||| | | |
|
|
| T |
13160920 |
accaatagtagtattggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagacc |
13161019 |
T |
|
| Q |
206 |
attttgatttgaaggcatggacttgtgtgtctgaggatttcaatattacgagagtaac |
263 |
Q |
| |
|
|||||||| |||| | ||| |||||| || ||||||||| ||||| ||||||||| |
|
|
| T |
13161020 |
attttgatctgaaagtctgggtttgtgtatcggaggatttcgatattctgagagtaac |
13161077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 7 - 263
Target Start/End: Original strand, 13289506 - 13289762
Alignment:
| Q |
7 |
agaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgctatcgcatagagacacaa |
106 |
Q |
| |
|
||||| |||||||||||| |||||||| ||||||| ||||| |||||||||||||| ||||||| | | || | |||||| |||| | || | ||| | |
|
|
| T |
13289506 |
agaacgccttcaagttcaatggtaaataaatctgttatggttggtaggaaggatgataaagagagactcattagtatgttgatatctgacagtggcacta |
13289605 |
T |
|
| Q |
107 |
tccgtaataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaaca |
206 |
Q |
| |
|
| || || ||| ||||| || |||||||| || ||||| ||| | || ||||| || |||||||||||| |||| |||||||||||||||||| | || |
|
|
| T |
13289606 |
ccaatagtagtattggtgtggtcgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagacca |
13289705 |
T |
|
| Q |
207 |
ttttgatttgaaggcatggacttgtgtgtctgaggatttcaatattacgagagtaac |
263 |
Q |
| |
|
||||||| |||| | ||| |||||| || ||||||||| ||||| ||||||||| |
|
|
| T |
13289706 |
ttttgatctgaaagtctgggtttgtgtatcggaggatttcgatattttgagagtaac |
13289762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 282
Target Start/End: Original strand, 10517310 - 10517580
Alignment:
| Q |
15 |
ttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgctatcgcatagagacacaatccgtaat |
114 |
Q |
| |
|
||||||||| ||| |||||||||||| | ||||||||||||| ||||| ||||| | | | || || |||||| |||| || | ||||| | | ||| |
|
|
| T |
10517310 |
ttcaagttcggtgctaaatgaatctgacgtggtgggtaggaatgatgataaagatagactcatcaatatgttggtatcagatgttggcacaagcagaaat |
10517409 |
T |
|
| Q |
115 |
aata---taggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttg |
211 |
Q |
| |
|
|||| ||||||||| ||||||| | || |||||||| | || ||||| |||||||| || |||||||||||||| | ||||| |||||||||||| |
|
|
| T |
10517410 |
aataatttaggtgttgctgcaattgtgggtatgggaggcgtcggtaaaacgacccttgcacagtttgtttacaatgatgcaaaagttgaacaacattttg |
10517509 |
T |
|
| Q |
212 |
atttgaaggcatggacttgtgtgtctgaggatttcaatattacgagagtaaccaagtctctgcttgaatct |
282 |
Q |
| |
|
|||| || || ||| |||||| ||||||||||| || ||| |||| |||||||||| | ||||||||| |
|
|
| T |
10517510 |
atttcaaagcctgggtttgtgtatctgaggattttgatgttattagagcaaccaagtctatccttgaatct |
10517580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 282
Target Start/End: Complemental strand, 11782127 - 11781956
Alignment:
| Q |
111 |
taataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacatttt |
210 |
Q |
| |
|
||||||| |||||||||| |||||||| || |||||||| | || ||||| |||||||| || ||||||||||||||| ||||| ||||||||||| |
|
|
| T |
11782127 |
taataatttaggtgttgtcgcaattttgggtatgggaggcgtcggtaaaacgacccttgcacagcttgtttacaatgatgtgaaagttgaacaacatttt |
11782028 |
T |
|
| Q |
211 |
gatttgaaggcatggacttgtgtgtctgaggatttcaatattacgagagtaaccaagtctctgcttgaatct |
282 |
Q |
| |
|
||||| || | ||| |||||| || ||||||||| || || ||| ||||||||||||| ||||||||| |
|
|
| T |
11782027 |
gatttcaaagtctgggtttgtgtatcggaggatttcgatgttgttagaataaccaagtctctccttgaatct |
11781956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 11782234 - 11782173
Alignment:
| Q |
7 |
agaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaaga |
68 |
Q |
| |
|
||||| ||||||||||||||| ||||| |||||| | ||||||||||||| ||||| ||||| |
|
|
| T |
11782234 |
agaaccccttcaagttcagtgctaaatcaatctgacgtggtgggtaggaatgatgataaaga |
11782173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 7 - 281
Target Start/End: Original strand, 26906738 - 26907012
Alignment:
| Q |
7 |
agaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgctatcgcatagagacacaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||| |
|
|
| T |
26906738 |
agaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaatatgttgctatcagagagagacacaa |
26906837 |
T |
|
| Q |
107 |
tccgtaataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaaca |
206 |
Q |
| |
|
|| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
26906838 |
cccataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcccaacttctttacaatgataaagaagttcaacggca |
26906937 |
T |
|
| Q |
207 |
ttttgatttgaaggcatggacttgtgtgtctgaggatttcaatattacgagagtaaccaagtctctgcttgaatc |
281 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||| ||||| |||||||| |
|
|
| T |
26906938 |
ttttgatttgaaggcatgggtttgtgtgtctgaggattttgatattatgagagtaaccaaatctctccttgaatc |
26907012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 6 - 263
Target Start/End: Complemental strand, 146168 - 145911
Alignment:
| Q |
6 |
aagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgctatcgcatagagacaca |
105 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||| ||||| |||||||||||||| ||||||| | | || | |||||| |||| | || | ||| |
|
|
| T |
146168 |
aagaacgccttcaagttcaatggtaaatgaatctgttatggttggtaggaaggatgataaagagagactcattagtatgttgatatctgacagtggcact |
146069 |
T |
|
| Q |
106 |
atccgtaataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaac |
205 |
Q |
| |
|
| | || || ||| ||||| ||||||||||| || ||||| ||| | || ||||| || |||||||||||| |||| |||||||||||||||||| | | |
|
|
| T |
146068 |
accaatagtagtattggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagacc |
145969 |
T |
|
| Q |
206 |
attttgatttgaaggcatggacttgtgtgtctgaggatttcaatattacgagagtaac |
263 |
Q |
| |
|
|||||||| |||| | ||| |||||| || ||||||||| ||||| ||||||||| |
|
|
| T |
145968 |
attttgatctgaaagtctgggtttgtgtatcggaggatttcgatattctgagagtaac |
145911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 6 - 263
Target Start/End: Complemental strand, 136117 - 135860
Alignment:
| Q |
6 |
aagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgctatcgcatagagacaca |
105 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||| ||||| || ||||||||||| ||||||| | | || | |||||| |||| | || | ||| |
|
|
| T |
136117 |
aagaacgccttcaagttcaatggtaaatgaatctgttatggttggaaggaaggatgataaagagagactcattagtatgttgatatctgacagtggcact |
136018 |
T |
|
| Q |
106 |
atccgtaataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaac |
205 |
Q |
| |
|
| | || || ||| ||||| ||||||||||| || ||||| ||| | || ||||| || |||||||||||| |||| |||||||||||||||||| | | |
|
|
| T |
136017 |
accaatagtagtattggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagacc |
135918 |
T |
|
| Q |
206 |
attttgatttgaaggcatggacttgtgtgtctgaggatttcaatattacgagagtaac |
263 |
Q |
| |
|
|||||||| |||| | ||| |||||| || ||||||||| ||||| ||||||||| |
|
|
| T |
135917 |
attttgatctgaaagtctgggtttgtgtatcggaggatttcgatattctgagagtaac |
135860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 50036 - 49981
Alignment:
| Q |
7 |
agaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatga |
62 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50036 |
agaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatga |
49981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 111 - 280
Target Start/End: Complemental strand, 44957833 - 44957664
Alignment:
| Q |
111 |
taataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacatttt |
210 |
Q |
| |
|
||||||| ||||||||||||| | ||||| ||||||||| | || ||||| || || || ||||||||||||||||||| | ||||| |||||||||| |
|
|
| T |
44957833 |
taataatttaggtgttgttgccaccttaggtatgggaggtgtcggtaaaacgactctcgcacaacttgtttacaatgatataaaagttgaacaacatttc |
44957734 |
T |
|
| Q |
211 |
gatttgaaggcatggacttgtgtgtctgaggatttcaatattacgagagtaaccaagtctctgcttgaat |
280 |
Q |
| |
|
||| | || ||||||| ||||| || |||||||||||| || ||| |||| |||||||| ||||||| |
|
|
| T |
44957733 |
gatctcaaagcatggatatgtgtatcagaggatttcaatgttgttagaataacaaagtctcttcttgaat |
44957664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 246
Target Start/End: Original strand, 11484962 - 11485097
Alignment:
| Q |
111 |
taataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacatttt |
210 |
Q |
| |
|
||||||| ||||||||||||||||||| | |||||||| | || ||||| |||||||| |||||||||||||| ||| || ||||| |||| |||||| |
|
|
| T |
11484962 |
taataatttaggtgttgttgcaattttggttatgggaggcgtcggtaaaacgacccttgcacaacttgtttacaacgatgaaaaagttgaacagcatttt |
11485061 |
T |
|
| Q |
211 |
gatttgaaggcatggacttgtgtgtctgaggatttc |
246 |
Q |
| |
|
||| | || |||||| |||||| || ||||||||| |
|
|
| T |
11485062 |
gatctcaaagcatgggtttgtgtatcggaggatttc |
11485097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 11484855 - 11484904
Alignment:
| Q |
7 |
agaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaa |
56 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||| |||||||| ||||| |
|
|
| T |
11484855 |
agaacaccatcaagttcagtggtgaatgaatctgttatggtgggaaggaa |
11484904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 44957937 - 44957876
Alignment:
| Q |
7 |
agaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaaga |
68 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||| | |||||||| ||||| |||| ||||| |
|
|
| T |
44957937 |
agaacaccttcaagttcaggggttaatgaatctattatggtgggcaggaaacatgataaaga |
44957876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 119 - 282
Target Start/End: Complemental strand, 17853060 - 17852897
Alignment:
| Q |
119 |
taggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaa |
218 |
Q |
| |
|
|||||||||||||||| || || ||||||||| | || ||||| |||||||| || ||||||||||||||| || | ||| |||| ||||||||| | || |
|
|
| T |
17853060 |
taggtgttgttgcaatattggggatgggaggtgtcggtaaaacgacccttgcacagcttgtttacaatgatgaaaaggttgaacatcattttgatctcaa |
17852961 |
T |
|
| Q |
219 |
ggcatggacttgtgtgtctgaggatttcaatattacgagagtaaccaagtctctgcttgaatct |
282 |
Q |
| |
|
|| ||| |||||| || || ||||| || || |||||||||||||||||| ||||||||| |
|
|
| T |
17852960 |
agcctgggtttgtgtatcagaagattttgatgttgtgagagtaaccaagtctctccttgaatct |
17852897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 17853175 - 17853116
Alignment:
| Q |
7 |
agaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaa |
66 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||| || ||||| ||||| ||| |
|
|
| T |
17853175 |
agaaccccttcaagttccgtggtaaatgaatctgtcatggtaggaaggaatgatgataaa |
17853116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 7129044 - 7128992
Alignment:
| Q |
166 |
cttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaa |
218 |
Q |
| |
|
||||| |||||||| |||||||| |||||||| |||||||||||||| ||||| |
|
|
| T |
7129044 |
cttgctcaacttgtatacaatgacaaagaagtgcaacaacattttgagttgaa |
7128992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 7482094 - 7482138
Alignment:
| Q |
166 |
cttgcccaacttgtttacaatgataaagaagttcaacaacatttt |
210 |
Q |
| |
|
||||| |||||||| |||||||| |||||||| |||||||||||| |
|
|
| T |
7482094 |
cttgctcaacttgtatacaatgacaaagaagtgcaacaacatttt |
7482138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 213
Target Start/End: Complemental strand, 31679961 - 31679755
Alignment:
| Q |
7 |
agaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgctatcgcatagagacacaa |
106 |
Q |
| |
|
|||||||||||||||||| | ||| || ||||| ||||||| ||||||||| ||| ||||||| | ||| || ||||||||||| || ||| |
|
|
| T |
31679961 |
agaacaccttcaagttcactagtagatcaatctttcatggttggtaggaagagtgataaagagaaactaactaatatgttgctatcagatgttagcactg |
31679862 |
T |
|
| Q |
107 |
tccgtaataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaaca |
206 |
Q |
| |
|
|| | ||||||| ||||||| ||||||| |||||||||||| | || ||||| |||| || |||||| |||||||||||||||| |||||| ||| |
|
|
| T |
31679861 |
tcaatgataatattaatgttgtttcaattttcggcatgggaggtgtcggtaaaacagccctagctcaacttctttacaatgataaagatgttcaagaacg |
31679762 |
T |
|
| Q |
207 |
ttttgat |
213 |
Q |
| |
|
||||||| |
|
|
| T |
31679761 |
ttttgat |
31679755 |
T |
|
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