View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13369_high_10 (Length: 355)

Name: NF13369_high_10
Description: NF13369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13369_high_10
NF13369_high_10
[»] chr3 (9 HSPs)
chr3 (8-338)||(30488208-30488537)
chr3 (8-321)||(30518961-30519276)
chr3 (187-338)||(30482170-30482320)
chr3 (220-325)||(30484122-30484227)
chr3 (189-338)||(30504131-30504277)
chr3 (220-325)||(30514951-30515056)
chr3 (262-338)||(30455626-30455703)
chr3 (235-302)||(30452725-30452792)
chr3 (90-170)||(30484003-30484076)
[»] chr6 (2 HSPs)
chr6 (50-123)||(6173121-6173193)
chr6 (187-236)||(6173241-6173288)
[»] chr5 (1 HSPs)
chr5 (10-170)||(38511995-38512144)


Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 8 - 338
Target Start/End: Original strand, 30488208 - 30488537
Alignment:
Q  8 tattcttatttgttagtatctgcttatttaaatttaactgtgtttatgtattgtttattttgacagataattaagggttttgttataataaggaagaaga 107  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30488208 tattcttatttgttagtatctgcttatttaaatttaattgtgtttatgtattgtttattttgacagataattaagggttttgttataataaggaagaaga 30488307  T
Q  108 cataaagtagtatgcaatatgcatatggatactgtgtttggaatcaagttgctgtatttgcacnnnnnnnnnnnnnnnnaataatttgataaaggttatg 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                |||||||||||||||||||||    
T  30488308 cataaagtagtatgcaatatgcatatggatactgtgtttggaatcaagttgctgtatttgcac-ttttttttctcttttaataatttgataaaggttatg 30488406  T
Q  208 agctttcgcacacttgtatgttaatcaatactgaggtatgtgtggatggtatggaattgcatgttttttaggaatagaattgcatgttatgtattgatcc 307  Q
    | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30488407 aactttcacacacttgtatgttaatcaatactgaggtatgtgtggatggtatggaattgcatgttttttaggaatagaattgcatgttatgtattgatcc 30488506  T
Q  308 taataatttggtgagacttgatggcattgat 338  Q
    |||||||||||||||||||||||||||||||    
T  30488507 taataatttggtgagacttgatggcattgat 30488537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 8 - 321
Target Start/End: Original strand, 30518961 - 30519276
Alignment:
Q  8 tattcttatttgttagtatctgcttatttaaatttaactgtgtttatgtattgtttattttgacagataattaagggttttgttataataaggaagaaga 107  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  30518961 tattcttatttgttagtatctgcttatttaaatttaattgt-tttatgtatggtttattttgacagataattaagggttttattataataaggaagaaga 30519059  T
Q  108 cataaagtagtatgcaatatgcatatggatactgtgtttggaatcaagttgctgtatttgcac-----nnnnnnnnnnnnnnnnaataatttgataaagg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||                     |||||||| |||||      
T  30519060 cataaagtagtatgcaatatgcatatggatactgtgtttggaatcaattttctgtatttgcactctttttttgggttctcttttaataattttataaaat 30519159  T
Q  203 ttatgagctttcgcacacttgtatgttaatcaatactgaggtatgtgtggatggtatggaattgcatgttttttaggaatagaattgcatgttatgtatt 302  Q
    |||||||||||  ||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||| ||||     
T  30519160 ttatgagcttt--cacacttgtatattgatcaatactgaggtatgtgtggattgtatggaattgcatgttttttaggcatagaattgtatgttaggtatc 30519257  T
Q  303 gatcctaataatttggtga 321  Q
    |||||||| | ||||||||    
T  30519258 gatcctaagattttggtga 30519276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 187 - 338
Target Start/End: Original strand, 30482170 - 30482320
Alignment:
Q  187 aataatttgataaaggttatgagctttcgcacacttgtatgttaatcaatactgaggtatgtgtggatggtatggaattgcatgtttttt-aggaataga 285  Q
    |||||||||||||| |||||||||||||  || ||||| | |||||||||||| ||||||| | |||||||||  ||||||||||||||| ||| |||||    
T  30482170 aataatttgataaaagttatgagctttc--actcttgtgtattaatcaatactaaggtatgaggggatggtataaaattgcatgtttttttaggcataga 30482267  T
Q  286 attgcatgttatgtattgatcctaataatttggtgagacttgatggcattgat 338  Q
    ||||||||||| ||||||||||||| |||||| |||||||||||| |||||||    
T  30482268 attgcatgttaagtattgatcctaagaatttgatgagacttgatgacattgat 30482320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 220 - 325
Target Start/End: Original strand, 30484122 - 30484227
Alignment:
Q  220 cttgtatgttaatcaatactgaggtatgtgtggatggtatggaattgcatgttttttaggaatagaattgcatgttatgtattgatcctaataatttggt 319  Q
    ||||||| |||||||||||||||||||||| |||||||||  |||||||||||||| |||  ||||||||||||||| ||||||||||| | ||||||||    
T  30484122 cttgtatattaatcaatactgaggtatgtggggatggtataaaattgcatgtttttaaggcgtagaattgcatgttaagtattgatcctgagaatttggt 30484221  T
Q  320 gagact 325  Q
    ||||||    
T  30484222 gagact 30484227  T

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Target: chr3; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 189 - 338
Target Start/End: Original strand, 30504131 - 30504277
Alignment:
Q  189 taatttgataaaggttatgagctttcgcacacttgtatgttaatcaatactgaggtatgtgtggatggtatggaattgcatgttttttaggaatagaatt 288  Q
    |||||||||| | |||||| |||||   ||||||| || |||||||||||||||||||||| |||||||||  ||||||||| |||| ||| ||||||||    
T  30504131 taatttgatacaagttatgggctttt--acacttggatattaatcaatactgaggtatgtggggatggtata-aattgcatgcttttaaggcatagaatt 30504227  T
Q  289 gcatgttatgtattgatcctaataatttggtgagacttgatggcattgat 338  Q
    |||||||| ||||||||||| | |||||| |  |||||||||| ||||||    
T  30504228 gcatgttaagtattgatcctgagaatttgctatgacttgatggtattgat 30504277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 220 - 325
Target Start/End: Original strand, 30514951 - 30515056
Alignment:
Q  220 cttgtatgttaatcaatactgaggtatgtgtggatggtatggaattgcatgttttttaggaatagaattgcatgttatgtattgatcctaataatttggt 319  Q
    ||||||| ||||||||||||||||||||||  ||||||||  |||||||||||||| ||| ||| |||||| ||||| ||||||||||| | ||||||||    
T  30514951 cttgtatattaatcaatactgaggtatgtggagatggtatacaattgcatgtttttaaggcatataattgcttgttaagtattgatcctgagaatttggt 30515050  T
Q  320 gagact 325  Q
    ||||||    
T  30515051 gagact 30515056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 262 - 338
Target Start/End: Original strand, 30455626 - 30455703
Alignment:
Q  262 aattgcatgttttttaggaatagaattg-catgttatgtattgatcctaataatttggtgagacttgatggcattgat 338  Q
    |||||||||||||||||  ||||||||  ||||||| ||||||||||| | |||||||| |||||||||| |||||||    
T  30455626 aattgcatgttttttagacatagaattttcatgttaagtattgatccttagaatttggtaagacttgatgacattgat 30455703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 302
Target Start/End: Original strand, 30452725 - 30452792
Alignment:
Q  235 atactgaggtatgtgtggatggtatggaattgcatgttttttaggaatagaattgcatgttatgtatt 302  Q
    ||||| ||||||||| |||||||||  |||||||| |||||| |  |||||||||||||||| |||||    
T  30452725 atactaaggtatgtggggatggtataaaattgcattttttttcgacatagaattgcatgttaagtatt 30452792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 170
Target Start/End: Original strand, 30484003 - 30484076
Alignment:
Q  90 ttataataaggaagaagacataaagtagtatgcaatatgcatatggatactgtgtttggaatcaagttgctgtatttgcac 170  Q
    |||||||||||||||||| ||||||||| ||||       |||||||||  |||||||||||||| |||||| ||||||||    
T  30484003 ttataataaggaagaagagataaagtagcatgc-------atatggatatggtgtttggaatcaatttgctgcatttgcac 30484076  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 6173121 - 6173193
Alignment:
Q  50 tttatgtattgtttattttgacagataattaagggttttgttataataaggaagaagacataaagtagtatgca 123  Q
    |||||||||| ||||||| |||||| ||||  ||||||| | |||||||||||||| ||||||||||| |||||    
T  6173121 tttatgtattttttatttagacagaaaatttggggttttat-ataataaggaagaaaacataaagtagcatgca 6173193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 236
Target Start/End: Original strand, 6173241 - 6173288
Alignment:
Q  187 aataatttgataaaggttatgagctttcgcacacttgtatgttaatcaat 236  Q
    |||||||||||||| ||||||||||||  ||||||||||| |||||||||    
T  6173241 aataatttgataaaagttatgagcttt--cacacttgtatattaatcaat 6173288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 170
Target Start/End: Original strand, 38511995 - 38512144
Alignment:
Q  10 ttcttatttgttagtatctgcttatttaaatttaactgtgtttatgtattgttt-attttgacagataattaagggttttgttataataaggaagaagac 108  Q
    |||||||||||| ||||||||| ||||| ||||||  || |||||||||| ||| ||||||||  | ||||  ||||||    ||||||||||||| |||    
T  38511995 ttcttatttgttggtatctgct-atttagatttaatcgt-tttatgtatttttttattttgactaaaaatttggggtttc---ataataaggaagacgac 38512089  T
Q  109 ataaagtagtatgcaatatgcatatggatactgtgtttggaatcaagttgctgtatttgcac 170  Q
    |||||||||| ||||       ||||||||| |||||||||||||| |||||| ||||||||    
T  38512090 ataaagtagtgtgca-------tatggataccgtgtttggaatcaatttgctgcatttgcac 38512144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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