View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13369_high_13 (Length: 289)

Name: NF13369_high_13
Description: NF13369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13369_high_13
NF13369_high_13
[»] chr8 (3 HSPs)
chr8 (141-230)||(43145175-43145264)
chr8 (13-62)||(43145343-43145392)
chr8 (162-211)||(43157752-43157801)


Alignment Details
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 43145264 - 43145175
Alignment:
Q  141 acacaagtccatgcatatagaaagatttactcagaaggatacaaatgtcaatgccattgaagaaatgtacaagatgacatatatataaga 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43145264 acacaagtccatgcatatagaaagatttactcagaaggatacaaatgtcaatgccattgaagaaatgtacaagatgacatatatataaga 43145175  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 43145392 - 43145343
Alignment:
Q  13 aaaatcaaccagaagtcaagcacatttcaagtccctggtggaatgaataa 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43145392 aaaatcaaccagaagtcaagcacatttcaagtccctggtggaatgaataa 43145343  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 43157801 - 43157752
Alignment:
Q  162 aagatttactcagaaggatacaaatgtcaatgccattgaagaaatgtaca 211  Q
    ||||||||||||||||||| ||| ||||||| |||| ||| |||||||||    
T  43157801 aagatttactcagaaggattcaattgtcaataccatagaataaatgtaca 43157752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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