View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13369_high_17 (Length: 248)
Name: NF13369_high_17
Description: NF13369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13369_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 4428326 - 4428088
Alignment:
| Q |
1 |
acatcaccatgcctagttattattatgattatgtagtttctaaaccagatgtaacattgatgaccgtttattatcttctttccttgtttgcttttgcaga |
100 |
Q |
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| T |
4428326 |
acatcaccatgcctagttattattatgattatgtagtttctaaaccagatgtaacattgatgaccgtttattatcttctttccttgtt-gcttttgcaga |
4428228 |
T |
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| Q |
101 |
atatatatatgtttagaaacaaatctgggccaaatatattacttagctaattattaggaatcttaagtatttagatcaggaaacaagatgcaatttggat |
200 |
Q |
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| T |
4428227 |
atatat----gtttagaaacaaatctgggccaaatatattacttagctaattattaggaatcttaagtatttggatcaggaaacaagatgcaatttggat |
4428132 |
T |
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| Q |
201 |
cggtgatgattgatgtaaccagtctccctgagcattttgttgga |
244 |
Q |
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| T |
4428131 |
cggtgatgattgatgcaaccagtctccctgagcatatttttgga |
4428088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 4439556 - 4439321
Alignment:
| Q |
1 |
acatcaccatgcctagttattattatgattatgtagtttctaaaccagatgt---aacattgatgaccgtttattatcttctttccttgtttgcttttgc |
97 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
4439556 |
acatcaccatgcctagttattattatgattatgtagtttctaaactagatgtaacaacattgatgaccgtttattatcttctttccttg-ttacttttgc |
4439458 |
T |
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| Q |
98 |
agaatatatatatgtttagaaacaaatctgggccaaata---tattacttagctaattattaggaatcttaagtatttagatcaggaaacaagatgcaat |
194 |
Q |
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| T |
4439457 |
aga----ctatatgtttagcaacaaatctggaccaaatatattattacttagctaattattgggaatcttaaatatttggattagtaaacaagatgcaat |
4439362 |
T |
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| Q |
195 |
ttggatcggtgatgattgatgtaaccagtctccctgagcat |
235 |
Q |
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| T |
4439361 |
ttggattagtgatgattgatgtaaccagtctacttgagcat |
4439321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 121 - 214
Target Start/End: Original strand, 20695697 - 20695790
Alignment:
| Q |
121 |
aaatctgggccaaatatattacttagctaattattaggaatcttaagtatttagatcaggaaacaagatgcaatttggatcggtgatgattgat |
214 |
Q |
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|||||||||||||||||||| || |||||||||||||||||||||| |||| ||| |||||||| | ||| ||| ||||| ||||| ||||| |
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| T |
20695697 |
aaatctgggccaaatatattgctgagctaattattaggaatcttaaatattgggattaggaaacaggttgctattgggatcaatgatggttgat |
20695790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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