View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13369_high_19 (Length: 238)

Name: NF13369_high_19
Description: NF13369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13369_high_19
NF13369_high_19
[»] chr1 (3 HSPs)
chr1 (1-221)||(4428460-4428678)
chr1 (1-221)||(4439689-4439907)
chr1 (3-221)||(18991041-18991251)
[»] chr3 (16 HSPs)
chr3 (1-221)||(9494877-9495095)
chr3 (1-91)||(9448146-9448236)
chr3 (1-94)||(9343677-9343770)
chr3 (144-221)||(41985598-41985675)
chr3 (142-211)||(9617542-9617611)
chr3 (3-90)||(9329670-9329757)
chr3 (175-221)||(9336541-9336587)
chr3 (1-59)||(9432719-9432777)
chr3 (143-211)||(9425542-9425610)
chr3 (175-221)||(9329837-9329883)
chr3 (5-90)||(9336376-9336461)
chr3 (144-221)||(9343815-9343892)
chr3 (142-211)||(9407334-9407403)
chr3 (142-198)||(9402347-9402403)
chr3 (142-198)||(9420586-9420642)
chr3 (169-221)||(41980849-41980901)
[»] chr2 (2 HSPs)
chr2 (142-221)||(20694370-20694449)
chr2 (1-58)||(20694504-20694561)
[»] chr8 (1 HSPs)
chr8 (1-91)||(13170829-13170919)
[»] chr6 (4 HSPs)
chr6 (2-89)||(7012644-7012731)
chr6 (2-89)||(7025580-7025667)
chr6 (144-205)||(7012784-7012845)
chr6 (2-87)||(7041341-7041426)
[»] chr7 (1 HSPs)
chr7 (2-90)||(450315-450403)


Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 4428460 - 4428678
Alignment:
Q  1 cgatccactctgtaggtggccagaacaagttaaaatattccggacaatcagacaaaggcgtaagctggcgttgatccaagtcaaaaacacagttctcata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4428460 cgatccactctgtaggtggccagaacaagttaaaatattccggacaatcagacaaaggcgtaagctggcgttgatccaagtcaaaaacacagttcccata 4428559  T
Q  101 ttgcatgtttttacaattaaaatggaggaaggcatcatcaaaataaagatgacacgattccctttagtaacagacaactcagaagcagaggcagaaaacg 200  Q
    ||||||||||||||||||||| |||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||     
T  4428560 ttgcatgtttttacaattaaagtggaggaaggcatcatc--aataaagatgacacaattccctttagtaacagacaactcagaagcagaggcagaaaaca 4428657  T
Q  201 aacatccattccccaaaaaca 221  Q
    |||||||||||||||||||||    
T  4428658 aacatccattccccaaaaaca 4428678  T

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Target: chr1; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 4439689 - 4439907
Alignment:
Q  1 cgatccactctgtaggtggccagaacaagttaaaatattccggacaatcagacaaaggcgtaagctggcgttgatccaagtcaaaaacacagttctcata 100  Q
    |||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||| |||||  | ||||||||||||||||||||||||| ||||    
T  4439689 cgatccactctgcaggtggccagaacaagttaaaatagtcaggacaatcagacaaaggcgaaagctttccttgatccaagtcaaaaacacagttcccata 4439788  T
Q  101 ttgcatgtttttacaattaaaatggaggaaggcatcatcaaaataaagatgacacgattccctttagtaacagacaactcagaagcagaggcagaaaacg 200  Q
    |||||||||||||| |||||||| |||||||||||||||  |||||||||||||| ||||||||||| |||| |||| || |||||||| ||||||||||    
T  4439789 ttgcatgtttttaccattaaaattgaggaaggcatcatc--aataaagatgacacaattccctttagaaacacacaaatccgaagcagaagcagaaaacg 4439886  T
Q  201 aacatccattccccaaaaaca 221  Q
    |||||||||||||||||||||    
T  4439887 aacatccattccccaaaaaca 4439907  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 221
Target Start/End: Original strand, 18991041 - 18991251
Alignment:
Q  3 atccactctgtaggtggccagaacaagttaaaatattccggacaatcagacaaaggcgtaagctggcgttgatccaagtcaaaaacacagttctcatatt 102  Q
    |||||||| | |||||||||||||||||| || || || ||| ||| ||||||||| | ||||    |||  |||||||||||||||||  || || ||     
T  18991041 atccactccggaggtggccagaacaagttgaagtagtcaggataatgagacaaaggagaaagcctttgttcgtccaagtcaaaaacacacatcccacatc 18991140  T
Q  103 gcatgtttttacaattaaaatggaggaaggcatcatcaaaataaagatgacacgattccctttagtaacagacaactcagaagcagaggcagaaaacgaa 202  Q
    |||||||      || |||| ||| ||| ||||| ||||  |||||| ||||| |||||||||   |||||| || ||||||||||| ||||||||||||    
T  18991141 gcatgtt------atcaaaagggatgaacgcatcgtcaa--taaagacgacacaattccctttgacaacagataaatcagaagcagaagcagaaaacgaa 18991232  T
Q  203 catccattccccaaaaaca 221  Q
    |||||||||||||| ||||    
T  18991233 catccattccccaagaaca 18991251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 7e-39; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 9495095 - 9494877
Alignment:
Q  1 cgatccactctgtaggtggccagaacaagttaaaatattccggacaatcagacaaaggcgtaagctggcgttgatccaagtcaaaaacacagttctcata 100  Q
    ||||||| || | ||||||||||||||||||||||||||| ||||| ||| ||||||||| || | | | || | ||||||||||||  || ||| ||||    
T  9495095 cgatccaatccggaggtggccagaacaagttaaaatattcaggacagtcacacaaaggcgaaacccgaccttcaaccaagtcaaaaatgcaattcccata 9494996  T
Q  101 ttgcatgtttttacaattaaaatggaggaaggcatcatcaaaataaagatgacacgattccctttagtaacagacaactcagaagcagaggcagaaaacg 200  Q
    | | ||||||| | ||||||||| ||||| ||| |||||||  |||||||||||| ||||||||| | |||  |||| ||||||||||| ||||||||||    
T  9494995 tagaatgttttcaaaattaaaattgaggatggcgtcatcaa--taaagatgacacaattccctttggaaacgcacaaatcagaagcagaagcagaaaacg 9494898  T
Q  201 aacatccattccccaaaaaca 221  Q
    |||||||||||||||| ||||    
T  9494897 aacatccattccccaagaaca 9494877  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 9448146 - 9448236
Alignment:
Q  1 cgatccactctgtaggtggccagaacaagttaaaatattccggacaatcagacaaaggcgtaagctggcgttgatccaagtcaaaaacaca 91  Q
    |||||||||||| |||||||||||||||||| |||  ||| || |||||||||||||| | |||| ||| ||||||||||| |||||||||    
T  9448146 cgatccactctggaggtggccagaacaagttcaaaatttcagggcaatcagacaaaggtgaaagcaggccttgatccaagtaaaaaacaca 9448236  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 9343677 - 9343770
Alignment:
Q  1 cgatccactctgtaggtggccagaacaagttaaaatattccggacaatcagacaaaggcgtaagctggcgttgatccaagtcaaaaacacagtt 94  Q
    |||||||||| | |||||||||||||||| |||||||||| ||||||||||||| ||| | |||| | | |||||||| || ||||||||||||    
T  9343677 cgatccactccggaggtggccagaacaaggtaaaatattcaggacaatcagacagaggtgaaagccgaccttgatccatgtgaaaaacacagtt 9343770  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 144 - 221
Target Start/End: Original strand, 41985598 - 41985675
Alignment:
Q  144 taaagatgacacgattccctttagtaacagacaactcagaagcagaggcagaaaacgaacatccattccccaaaaaca 221  Q
    |||||||||||| ||| |||||   ||||||||| || |||||||| |||||||||||||||||||||||||| ||||    
T  41985598 taaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaaca 41985675  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 9617611 - 9617542
Alignment:
Q  142 aataaagatgacacgattccctttagtaacagacaactcagaagcagaggcagaaaacgaacatccattc 211  Q
    |||||||||||||| ||||||||| | |||| |||| || |||||||| |||||||| ||||||||||||    
T  9617611 aataaagatgacacaattccctttggaaacacacaaatctgaagcagaagcagaaaatgaacatccattc 9617542  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 90
Target Start/End: Original strand, 9329670 - 9329757
Alignment:
Q  3 atccactctgtaggtggccagaacaagttaaaatattccggacaatcagacaaaggcgtaagctggcgttgatccaagtcaaaaacac 90  Q
    |||||||||| ||||||||||||||| || |||||||| ||| |||| |||||||| | |  ||| | ||||||||||| ||||||||    
T  9329670 atccactctggaggtggccagaacaacttgaaatattcaggataatccgacaaaggtgaagcctgaccttgatccaagtgaaaaacac 9329757  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 9336541 - 9336587
Alignment:
Q  175 caactcagaagcagaggcagaaaacgaacatccattccccaaaaaca 221  Q
    |||||| |||||||| |||||||||||||||||||||||||| ||||    
T  9336541 caactcggaagcagaagcagaaaacgaacatccattccccaagaaca 9336587  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 9432719 - 9432777
Alignment:
Q  1 cgatccactctgtaggtggccagaacaagttaaaatattccggacaatcagacaaaggc 59  Q
    |||||||||| | ||||||||||||||||||  ||||||| ||| ||||||||||||||    
T  9432719 cgatccactccggaggtggccagaacaagttgtaatattcaggataatcagacaaaggc 9432777  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 211
Target Start/End: Original strand, 9425542 - 9425610
Alignment:
Q  143 ataaagatgacacgattccctttagtaacagacaactcagaagcagaggcagaaaacgaacatccattc 211  Q
    ||||||||||||| ||||||||| | |||| |||| || ||||| || |||||||| ||||||||||||    
T  9425542 ataaagatgacacaattccctttggcaacacacaaatccgaagctgaagcagaaaatgaacatccattc 9425610  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 9329837 - 9329883
Alignment:
Q  175 caactcagaagcagaggcagaaaacgaacatccattccccaaaaaca 221  Q
    |||||| |||||||| |||||||||||| ||||||||||||| ||||    
T  9329837 caactcggaagcagaagcagaaaacgaatatccattccccaagaaca 9329883  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 9336376 - 9336461
Alignment:
Q  5 ccactctgtaggtggccagaacaagttaaaatattccggacaatcagacaaaggcgtaagctggcgttgatccaagtcaaaaacac 90  Q
    |||| ||| ||||||||||||||| || |||||||| ||| |||| |||||||| | |  ||| | ||||||||||| ||||||||    
T  9336376 ccacgctggaggtggccagaacaacttgaaatattcgggataatccgacaaaggtgaagcctgaccttgatccaagtgaaaaacac 9336461  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 221
Target Start/End: Original strand, 9343815 - 9343892
Alignment:
Q  144 taaagatgacacgattccctttagtaacagacaactcagaagcagaggcagaaaacgaacatccattccccaaaaaca 221  Q
    ||||||  |||| ||| ||| ||| |||| |||| || |||||||| ||||||||||||||| |||||||||| ||||    
T  9343815 taaagacaacacaatttcctctaggaacacacaaatccgaagcagaagcagaaaacgaacattcattccccaagaaca 9343892  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 211
Target Start/End: Original strand, 9407334 - 9407403
Alignment:
Q  142 aataaagatgacacgattccctttagtaacagacaactcagaagcagaggcagaaaacgaacatccattc 211  Q
    |||||||| ||||| ||||||||| | |||| |||| || ||||| || |||||||| ||||||||||||    
T  9407334 aataaagaagacacaattccctttggcaacacacaaatccgaagctgaagcagaaaatgaacatccattc 9407403  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 9402347 - 9402403
Alignment:
Q  142 aataaagatgacacgattccctttagtaacagacaactcagaagcagaggcagaaaa 198  Q
    ||||||||||| || ||||||||||| |||| |||| || || ||||||||||||||    
T  9402347 aataaagatgatacaattccctttaggaacacacaaatctgaggcagaggcagaaaa 9402403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 9420586 - 9420642
Alignment:
Q  142 aataaagatgacacgattccctttagtaacagacaactcagaagcagaggcagaaaa 198  Q
    ||||||||||| || ||||||||||| |||| |||| || || ||||||||||||||    
T  9420586 aataaagatgatacaattccctttaggaacacacaaatctgaggcagaggcagaaaa 9420642  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 41980849 - 41980901
Alignment:
Q  169 aacagacaactcagaagcagaggcagaaaacgaacatccattccccaaaaaca 221  Q
    ||||||||| |  |||||||| ||| |||||||||||||||||||||| ||||    
T  41980849 aacagacaaatttgaagcagaagcaaaaaacgaacatccattccccaagaaca 41980901  T

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Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 142 - 221
Target Start/End: Complemental strand, 20694449 - 20694370
Alignment:
Q  142 aataaagatgacacgattccctttagtaacagacaactcagaagcagaggcagaaaacgaacatccattccccaaaaaca 221  Q
    |||||||||||||| ||||||||| | |||| |||| || |||||||| |||||||||||||||||||||||||||||||    
T  20694449 aataaagatgacacaattccctttggcaacacacaaatccgaagcagaagcagaaaacgaacatccattccccaaaaaca 20694370  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 20694561 - 20694504
Alignment:
Q  1 cgatccactctgtaggtggccagaacaagttaaaatattccggacaatcagacaaagg 58  Q
    |||||||||| | ||| ||||||||||||||||||||||| ||| |||| ||||||||    
T  20694561 cgatccactcaggaggaggccagaacaagttaaaatattcaggataatcggacaaagg 20694504  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 13170919 - 13170829
Alignment:
Q  1 cgatccactctgtaggtggccagaacaagttaaaatattccggacaatcagacaaaggcgtaagctggcgttgatccaagtcaaaaacaca 91  Q
    ||||||| |||| ||||||||| |||||||| || || || ||||||||||| ||||| | |||| ||| ||||||||||| |||||||||    
T  13170919 cgatccattctggaggtggccaaaacaagttgaagtactcgggacaatcagataaaggggaaagccggcattgatccaagtgaaaaacaca 13170829  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 7012644 - 7012731
Alignment:
Q  2 gatccactctgtaggtggccagaacaagttaaaatattccggacaatcagacaaaggcgtaagctggcgttgatccaagtcaaaaaca 89  Q
    ||||||||||| ||||||||| ||||||||  ||||||| ||||||||||||||| ||| | |  | | |||||||||||| ||||||    
T  7012644 gatccactctgcaggtggccataacaagttggaatattcgggacaatcagacaaaagcgaatgtcgaccttgatccaagtccaaaaca 7012731  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 7025580 - 7025667
Alignment:
Q  2 gatccactctgtaggtggccagaacaagttaaaatattccggacaatcagacaaaggcgtaagctggcgttgatccaagtcaaaaaca 89  Q
    ||||||||||| ||||||||||||||||||  ||||||| ||| |||| |||||| ||| | || | | | |||||||||| ||||||    
T  7025580 gatccactctggaggtggccagaacaagttggaatattcaggataatcggacaaaagcgaatgccgacctagatccaagtccaaaaca 7025667  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 205
Target Start/End: Original strand, 7012784 - 7012845
Alignment:
Q  144 taaagatgacacgattccctttagtaacagacaactcagaagcagaggcagaaaacgaacat 205  Q
    |||||||||||  ||||||||| | |||| |||| || |||||| |||||||||||||||||    
T  7012784 taaagatgacagaattccctttggcaacacacaaatccgaagcacaggcagaaaacgaacat 7012845  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 7041341 - 7041426
Alignment:
Q  2 gatccactctgtaggtggccagaacaagttaaaatattccggacaatcagacaaaggcgtaagctggcgttgatccaagtcaaaaa 87  Q
    |||||||| || ||||||||||||||||||  ||||||| ||| ||||||| | ||||| | || | | |||||||||||| ||||    
T  7041341 gatccactttggaggtggccagaacaagttggaatattcaggataatcagatagaggcgaatgccgaccttgatccaagtccaaaa 7041426  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 450403 - 450315
Alignment:
Q  2 gatccactctgtaggtggccagaacaagttaaaatattccggacaatcagacaaaggcgtaagctggcgttgatccaagtcaaaaacac 90  Q
    |||||| |||| ||||||||||||||| || ||||| |||||| |||||||||| || | || | | | ||||||||||| ||||||||    
T  450403 gatccaatctggaggtggccagaacaacttgaaataatccggataatcagacaagggtgaaacccgaccttgatccaagtgaaaaacac 450315  T

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