View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13369_high_3 (Length: 505)
Name: NF13369_high_3
Description: NF13369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13369_high_3 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 467; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 1 - 495
Target Start/End: Original strand, 4289807 - 4290301
Alignment:
| Q |
1 |
cccaagatttgataaaagaagttgaagttttaccatctaaaacagcatgatgtgaagtaataccaattgaaaatccatagtttggaaatacggtaacttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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|
| T |
4289807 |
cccaagatttgataaaagaagttgaagttttaccatctaaaacagcatgatgtgaagtaataccaattgaaaatccatagtttggaaaaatggtaacttg |
4289906 |
T |
|
| Q |
101 |
aagagccaaaacagaagcttgatcatgagaaatattcaagttaggtaaaagatcatgaatttgtgtagcttcagaaagattcttaccagataaatgattg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4289907 |
aagagccaaaacagaagcttgatcatgagaaatattcaagttaggtaaaagatcatgaatttgtgtagcttcagaaagattcttaccagataaatgattg |
4290006 |
T |
|
| Q |
201 |
aaatcatcatgagattcagctatggtaagtgaaagagtgtttcctcttatgaatttaatgattggtttgtgagaatcattaggccaaatgagatgaccca |
300 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4290007 |
aaatcagcatgagattcagctatggtaagtgaaagagtgtttcctcttatgaatttaatgattggtttgtgagaatcattaggccaaatgagatgaccca |
4290106 |
T |
|
| Q |
301 |
aaagaggataaaagtgataaagtgtaagagaaagggattgtttgagtttgggaagaaggttattgaagaaaagtgaggtttggtgtggaaattcatagaa |
400 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
4290107 |
aaagaggataaaagtgagaaagtgtaagagaaagagattgtttgagtttgggaagaagggtatttaagaaaagtgaggtttggtgtggaaattcatagaa |
4290206 |
T |
|
| Q |
401 |
gaaaattctttgaacaggtggtaatcttaaccataatatgtcaaagaaagtaagaggaagtgatgtttctgaaggtagttctacttgtgatgatg |
495 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4290207 |
gaaaattctttgaacaggtggtaatcttaaccataatatgtcaaagaaagtaagaggaagtgatgtttctgaaggtagttctacttgtgatgatg |
4290301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 495
Target Start/End: Complemental strand, 4260370 - 4259876
Alignment:
| Q |
1 |
cccaagatttgataaaagaagttgaagttttaccatctaaaacagcatgatgtgaagtaataccaattgaaaatccatagtttggaaatacggtaacttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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|
| T |
4260370 |
cccaagatttgataaaagaagttgaagttttaccatctaaaacagcatgatgtgaagtaataccaattgaaaatccatagtttggaaaaaaagtaacttg |
4260271 |
T |
|
| Q |
101 |
aagagccaaaacagaagcttgatcatgagaaatattcaagttaggtaaaagatcatgaatttgtgtagcttcagaaagattcttaccagataaatgattg |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
4260270 |
aagagccaaaaaagaagcttgatcatgagaaatattcaagttaggtaaaaaatcatgaatctgtgtagcttcagaaagattcttaccagagaaatgattg |
4260171 |
T |
|
| Q |
201 |
aaatcatcatgagattcagctatggtaagtgaaagagtgtttcctcttatgaatttaatgattggtttgtgagaatcattaggccaaatgagatgaccca |
300 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
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|
| T |
4260170 |
aaatcagcatgagattcagctacggtaagtgaaagagtgtttcctttgatgaatttaatgattggcttgtgagaatcatgaggccaaatgagatgaccca |
4260071 |
T |
|
| Q |
301 |
aaagaggataaaagtgataaagtgtaagagaaagggattgtttgagtttgggaagaaggttattgaagaaaagtgaggtttggtgtggaaattcatagaa |
400 |
Q |
| |
|
||||||||||||||||| |||||| || ||||| |||| ||||||||||||||||||| | |||||||||| |||||||||||||||||| |||||||| |
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|
| T |
4260070 |
aaagaggataaaagtgagaaagtgcaatggaaagtgattttttgagtttgggaagaagggttttgaagaaaaatgaggtttggtgtggaaactcatagaa |
4259971 |
T |
|
| Q |
401 |
gaaaattctttgaacaggtggtaatcttaaccataatatgtcaaagaaagtaagaggaagtgatgtttctgaaggtagttctacttgtgatgatg |
495 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4259970 |
gaaaattctttgaacaggtggtaatcttaaccatagtatgtcaaagaaagtaagaggaagtgatgtttctgaaggtagttctacttgtgaagatg |
4259876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 495
Target Start/End: Complemental strand, 4265916 - 4265422
Alignment:
| Q |
1 |
cccaagatttgataaaagaagttgaagttttaccatctaaaacagcatgatgtgaagtaataccaattgaaaatccatagtttggaaatacggtaacttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
4265916 |
cccaagatttgataaaagaagttgaagttttaccatctaaaacagcatgatgtgaagtaataccaattgaaaatccatagtttggaaaaagagtaacttg |
4265817 |
T |
|
| Q |
101 |
aagagccaaaacagaagcttgatcatgagaaatattcaagttaggtaaaagatcatgaatttgtgtagcttcagaaagattcttaccagataaatgattg |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| || | ||||||| |
|
|
| T |
4265816 |
aagagccaaaatagaagcttgatcatgagaaatattcaagttaggtaaaagatcatgaatttgtttagcttcagtaagattcttacctgaaagatgattg |
4265717 |
T |
|
| Q |
201 |
aaatcatcatgagattcagctatggtaagtgaaagagtgtttcctcttatgaatttaatgattggtttgtgagaatcattaggccaaatgagatgaccca |
300 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||| |||||| | |||||||| |||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
4265716 |
aaatcagcatcagattcagctatggtaagtgaaagagggtttcccttgatgaatttgatgattggcttgtgagaatcattaggccaagtgagatgaccca |
4265617 |
T |
|
| Q |
301 |
aaagaggataaaagtgataaagtgtaagagaaagggattgtttgagtttgggaagaaggttattgaagaaaagtgaggtttggtgtggaaattcatagaa |
400 |
Q |
| |
|
||||||||||||||| | |||||| || ||||| |||| ||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4265616 |
aaagaggataaaagtaagaaagtgcaatggaaagtgattttttgagtttgggaagaagggtgttgtagaaaagtgaggtttggtgtggaaattcatagaa |
4265517 |
T |
|
| Q |
401 |
gaaaattctttgaacaggtggtaatcttaaccataatatgtcaaagaaagtaagaggaagtgatgtttctgaaggtagttctacttgtgatgatg |
495 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||| | ||||| |||| |
|
|
| T |
4265516 |
gaaaattctttgaactggtggtaatcttaaccataatatgtccaagaaagtaagaggaagtgatgtttctaaaggaagttcttcctgtgaagatg |
4265422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 4298391 - 4298705
Alignment:
| Q |
1 |
cccaagatttgataaaagaagttgaagttttaccatctaaaacagcatgatgtgaagtaataccaattgaaaatccatagtttggaaatacggtaacttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4298391 |
cccaagatttgataaaagaagttgaagttttaccatctaaaacagcatgatgtgaagtaataccaattgaaaatccatagtttggaaaaacggtaacttg |
4298490 |
T |
|
| Q |
101 |
aagagccaaaacagaagcttgatcatgagaaatattcaagttaggtaaaagatcatgaatttgtgtagcttcagaaagattcttaccagataaatgattg |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||| |
|
|
| T |
4298491 |
aagagccaaaacataagcttgatcatgagaaatattcaagttaggtaaaagatcatgaatttgtgtagcttcagaaggattcttaccagatagataattg |
4298590 |
T |
|
| Q |
201 |
aaatcatcatgagattcagctatggtaagtgaaagagtgtttcctctt-atgaatttaatgattggtttgtgagaatcattaggccaaatgagatgaccc |
299 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||| ||||| | |||||| |||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4298591 |
aaatcagaatcagattcagctatggtaagtgaaagagtgttt-ctcttgaagaatttgatgattggtttgtgagaatcattaggccaagtgagatgaccc |
4298689 |
T |
|
| Q |
300 |
aaaagaggataaaagt |
315 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
4298690 |
aaaagaggataaaagt |
4298705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 330 - 495
Target Start/End: Original strand, 4293504 - 4293669
Alignment:
| Q |
330 |
gaaagggattgtttgagtttgggaagaaggttattgaagaaaagtgaggtttggtgtggaaattcatagaagaaaattctttgaacaggtggtaatctta |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4293504 |
gaaagggattgtttgagtttgggaagaagggtattgaagaaaagtgaggtttggtgtggaaattcatagaagaaaattctttgaacaggtggtaatctta |
4293603 |
T |
|
| Q |
430 |
accataatatgtcaaagaaagtaagaggaagtgatgtttctgaaggtagttctacttgtgatgatg |
495 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4293604 |
accataatatgtcaaagaaagtaagaggaagtgatgtttctgaaggtagttctacttgtgatgatg |
4293669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 294 - 482
Target Start/End: Original strand, 4258385 - 4258572
Alignment:
| Q |
294 |
tgacccaaaagaggataaaagtgataaagtgtaagagaaagggattgtttgagtttgggaagaaggttattgaagaaaagtgaggtttggtgtggaaatt |
393 |
Q |
| |
|
|||||||||||| | ||| ||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4258385 |
tgacccaaaagatg-taagagtgagaaagtgtaagagaaagggattgattgagtttgggaagaagggtattgaagaaaagtgaggtttggtgtggaaatt |
4258483 |
T |
|
| Q |
394 |
catagaagaaaattctttgaacaggtggtaatcttaaccataatatgtcaaagaaagtaagaggaagtgatgtttctgaaggtagttct |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4258484 |
catagaagaaaattctttgaacaggtggtaatcttaaccatagtatgtcaaagaaagtaagaggaagtgatgtttctgaaggaagttct |
4258572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 33 - 217
Target Start/End: Original strand, 4285109 - 4285293
Alignment:
| Q |
33 |
ccatctaaaacagcatgatgtgaagtaataccaattgaaaatccatagtttggaaatacggtaacttgaagagccaaaacagaagcttgatcatgagaaa |
132 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
4285109 |
ccatctaaaacagcatgatgtgaagtaatgcccattgaaaatccatagtttggaaaaacagtaacttgaagagccaaaacagtagcttgatcatgtgaaa |
4285208 |
T |
|
| Q |
133 |
tattcaagttaggtaaaagatcatgaatttgtgtagcttcagaaagattcttaccagataaatgattgaaatcatcatgagattc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||| || |||||||||| |
|
|
| T |
4285209 |
tattcaagttaggtaaaagatcatgaatttgtgtggcttctgaaagattcttagcagataaatgattgaaagcagcatgagattc |
4285293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 330 - 451
Target Start/End: Original strand, 4300185 - 4300306
Alignment:
| Q |
330 |
gaaagggattgtttgagtttgggaagaaggttattgaagaaaagtgaggtttggtgtggaaattcatagaagaaaattctttgaacaggtggtaatctta |
429 |
Q |
| |
|
||||| |||| ||||||||||||||||||| | |||| |||||||| |||||||||||||||||||||||||||| || ||||| | ||||||||||||| |
|
|
| T |
4300185 |
gaaagtgattttttgagtttgggaagaagggtgttgaggaaaagtgtggtttggtgtggaaattcatagaagaaatttttttgacctggtggtaatctta |
4300284 |
T |
|
| Q |
430 |
accataatatgtcaaagaaagt |
451 |
Q |
| |
|
|||||| ||||||||||||||| |
|
|
| T |
4300285 |
accatagtatgtcaaagaaagt |
4300306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 445 - 495
Target Start/End: Original strand, 4303509 - 4303559
Alignment:
| Q |
445 |
agaaagtaagaggaagtgatgtttctgaaggtagttctacttgtgatgatg |
495 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||||| |||| |
|
|
| T |
4303509 |
agaaagtaagaggaagtgatgtttctgaaggaagttcttcttgtgaagatg |
4303559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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