View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13369_high_9 (Length: 425)
Name: NF13369_high_9
Description: NF13369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13369_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 18 - 413
Target Start/End: Complemental strand, 19795632 - 19795237
Alignment:
| Q |
18 |
cagggaagactactattgctgctggtgctttgcttcctcacgagattatagagtctttgggggatggagatggtggagaagttgctgagttgcagtggaa |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||| |
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| T |
19795632 |
cagggaagactactattgctgctggtgctttgcttcctcacgagattatagagtctttggatgatgaagatggtggagaagtggctgagttgcagtggaa |
19795533 |
T |
|
| Q |
118 |
gagaattgttgatgatttgctcaagaaaggaaagatgaaaaattgtcttgctgtgtgtgatgtgtctgggagcatgtctgggactcctatggaggtgtgt |
217 |
Q |
| |
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||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||| |
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| T |
19795532 |
gagaattgttgatgatttgctcaagaagggaaaaatgaggaattgtcttgctgtgtgtgatgtgtctgggagtatgcatgggacccctatggaggtgtgt |
19795433 |
T |
|
| Q |
218 |
gtggcattggggttgttggtgtctgaattgaacgaggaaccatggaaagggaaggttattactttcagcagggagcctcagcttcatgtgattaaggggg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19795432 |
gtggcattggggttgttggtgtctgaattgaacgaggaaccatggaaagggaaggttattactttcagcagggagcctcagcttcatgtgattaaggggg |
19795333 |
T |
|
| Q |
318 |
ataatctcaagtccaagacacagtttgtgaggaacatggattgggggatgaacactgattttcagaaggtgtttgatcgcatattggatgtagctg |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19795332 |
ataatctcaagtccaagacacagtttgtgaggaacatggattgggggatgaacactgattttcagaaggtgtttgatcgcatattggatgtagctg |
19795237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 405
Target Start/End: Original strand, 19785955 - 19786342
Alignment:
| Q |
18 |
cagggaagactactattgctgctggtgctttgcttcctcacgagattatagagtctttgggggatggagatggtggagaagttgctgagttgcagtggaa |
117 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19785955 |
caggaaagactactattgctgctggtgctttgcttcctcaccagattatagagtctttgggggatggagatggtggagaagttgctgagttgcagtggaa |
19786054 |
T |
|
| Q |
118 |
gagaattgttgatgatttgctcaagaaaggaaagatgaaaaattgtcttgctgtgtgtgatgtgtctgggagcatgtctgggactcctatggaggtgtgt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| | |
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| T |
19786055 |
gagaattgttgatgatttgctcaagaaaggaaagatgaaaaattgtcttgcagtgtgtgatgtttctgggagcatgtctgggactcctatggaggtgtct |
19786154 |
T |
|
| Q |
218 |
gtggcattggggttgttggtgtctgaattgaacgaggaaccatggaaagggaaggttattactttcagcagggagcctcagcttcatgtgattaaggggg |
317 |
Q |
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|||||||||||||||||||||||||||||| || || || ||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
19786155 |
ttggcattggggttgttggtgtctgaattgagtgatgagccttggaaagggaaagttattactttcagcgaggagcctcagcttcatgtaattaaggggg |
19786254 |
T |
|
| Q |
318 |
ataatctcaagtccaagacacagtttgtgaggaacatggattgggggatgaacactgattttcagaaggtgtttgatcgcatattgga |
405 |
Q |
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|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
19786255 |
ataatctcaagtccaagacacagtttgtgagggatatggattgggggatgaacactgatttccagaaggtgtttgatcgcatattgga |
19786342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 413
Target Start/End: Complemental strand, 15834939 - 15834544
Alignment:
| Q |
18 |
cagggaagactactattgctgctggtgctttgcttcctcacgagattatagagtctttgggggatggagatggtggagaagttgctgagttgcagtggaa |
117 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||| | ||||| ||||||||||||| | ||||||||||||||| |
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| T |
15834939 |
cagggaagactactatggctgctggtgctttgcttcctcataagattataaagtcttttttgaatggatatggtggagaagtggatgagttgcagtggaa |
15834840 |
T |
|
| Q |
118 |
gagaattgttgatgatttgctcaagaaaggaaagatgaaaaattgtcttgctgtgtgtgatgtgtctgggagcatgtctgggactcctatggaggtgtgt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||| |||| |||||| ||||||||||||| | |
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| T |
15834839 |
gagaattgttgatgatttgctcaagaaaggaaagatgaaaaattgtcttgcagtgtctgatgtgtctgcgagtatgtatgggacccctatggaggtgtct |
15834740 |
T |
|
| Q |
218 |
gtggcattggggttgttggtgtctgaattgaacgaggaaccatggaaagggaaggttattactttcagcagggagcctcagcttcatgtgattaaggggg |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||| |||||| ||||||||||||||||||||| |
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| T |
15834739 |
gtggcattggggttgttggtgtctgaattgagcgaggaaccatggaaagggaaggtgattagtttcagtgctgagcctgagcttcatgtgattaaggggg |
15834640 |
T |
|
| Q |
318 |
ataatctcaagtccaagacacagtttgtgaggaacatggattgggggatgaacactgattttcagaaggtgtttgatcgcatattggatgtagctg |
413 |
Q |
| |
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|| |||| ||||||||| || ||||||||| |||||||||||||| | ||||||||||| ||||||||||||||||| ||||||||||| |||| |
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| T |
15834639 |
atgatctgaagtccaaggcaaggtttgtgagatacatggattgggggttcaacactgatttccagaaggtgtttgatcgaatattggatgtggctg |
15834544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 218; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 20 - 413
Target Start/End: Complemental strand, 47712529 - 47712136
Alignment:
| Q |
20 |
gggaagactactattgctgctggtgctttgcttcctcacgagattatagagtctttgggggatggagatggtggagaagttgctgagttgcagtggaaga |
119 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||| || ||||| ||| ||||||||||||||||||||||| || || ||||| ||||||| || |
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| T |
47712529 |
gggaagactacgatcgctgctggtgctttgcttcctcatgatattattcggtcgttgggggatggagatggtggagaggtggcggagttacagtggacga |
47712430 |
T |
|
| Q |
120 |
gaattgttgatgatttgctcaagaaaggaaagatgaaaaattgtcttgctgtgtgtgatgtgtctgggagcatgtctgggactcctatggaggtgtgtgt |
219 |
Q |
| |
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|||| || |||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||| ||| |||||| |||||||| |||||||| |
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| T |
47712429 |
gaatggtggatgatttgctcaagaaagggaagatgaggaattgtcttgctgtgtgtgatgtttctgggagtatgactgggatccctatggatgtgtgtgt |
47712330 |
T |
|
| Q |
220 |
ggcattggggttgttggtgtctgaattgaacgaggaaccatggaaagggaaggttattactttcagcagggagcctcagcttcatgtgattaagggggat |
319 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||| |
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|
| T |
47712329 |
ggcattgggattgttggtgtctgaattgtgtgaggaaccttggaaagggaaggtgattactttcagtgctgagcctcagcttcatgtgattcagggggat |
47712230 |
T |
|
| Q |
320 |
aatctcaagtccaagacacagtttgtgaggaacatggattgggggatgaacactgattttcagaaggtgtttgatcgcatattggatgtagctg |
413 |
Q |
| |
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|||| |||||||||||| ||||||||| | | |||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||| |
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| T |
47712229 |
gatctgaagtccaagacagagtttgtgatggagatggattgggggatgaacactgatttccagaaggtatttgatcgcatattggatgtcgctg |
47712136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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