View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13369_low_1 (Length: 1176)

Name: NF13369_low_1
Description: NF13369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13369_low_1
NF13369_low_1
[»] chr8 (5 HSPs)
chr8 (1-784)||(43618795-43619560)
chr8 (265-629)||(43626328-43626692)
chr8 (884-992)||(43618613-43618721)
chr8 (1063-1158)||(43618508-43618603)
chr8 (5-69)||(43626809-43626873)
[»] chr2 (1 HSPs)
chr2 (1055-1157)||(275016-275118)
[»] chr3 (2 HSPs)
chr3 (929-1049)||(5565152-5565280)
chr3 (999-1055)||(14175269-14175325)
[»] chr6 (3 HSPs)
chr6 (265-647)||(32408372-32408754)
chr6 (295-434)||(32433282-32433421)
chr6 (5-69)||(32407681-32407745)
[»] chr7 (1 HSPs)
chr7 (956-992)||(7854246-7854282)
[»] scaffold0007 (1 HSPs)
scaffold0007 (999-1049)||(257685-257735)


Alignment Details
Target: chr8 (Bit Score: 717; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 717; E-Value: 0
Query Start/End: Original strand, 1 - 784
Target Start/End: Complemental strand, 43619560 - 43618795
Alignment:
Q  1 tcactgcagcaccagcagtagctccaaatccgggtactacattgatcactccatctgggattccagcctacaagaaggcaaaaacaaagaaaacacaatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43619560 tcactgcagcaccagcagtagctccaaatccgggtactacattgatcactccatctgggattccagcctacaagaaggcaaaaacaaagaaaacacaatc 43619461  T
Q  101 accttgagctcaagtaacatgtgatgtgctatgtatctcgacacttcaaattattaatagtgtcgatgtgttagtatcagtatcgtatttgatgttcgtg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  ||||||||||    
T  43619460 accttgagctcaagtaacatgtgatgtgctatgtatctcgacacttcaaattattaatagtgtcgatgtgtt------------------gatgttcgtg 43619379  T
Q  201 tcaatgcttcataggtgatataagatgctaagtagaaattaatgatttaccgaatcataccaatttagctagatgagcataaaacaaagcagatagaggt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43619378 tcaatgcttcataggtgatataagatgctaagtagaaattaatgatttaccgaatcataccaatttagctagatgagcataaaacaaagcagatagaggt 43619279  T
Q  301 gtttgctcagcaggtttgacgaccatggtgcacccagcagctaagcaagggctaaccttgacaaagaacagggaagtgggaaagttccaaggaataatgt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43619278 gtttgctcagcaggtttgacgaccatggtgcacccagcagctaagcaagggctaaccttgacaaagaacagggaagtgggaaagttccaaggaataatgt 43619179  T
Q  401 gtccaacaacaccaattggttccatcaatgtataagcatggaactctcttgcaacttttaatacctctccatgaattttatcagctgcacctgcatagta 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43619178 gtccaacaacaccaattggttccatcaatgtataagcatggaactctcttgcaacttttaatacctctccatgaattttatcagctgcacctgcatagta 43619079  T
Q  501 acgaagtgtatttgctgctgagggaatgtcaagagccttacacatatggtacaactttcctgcatcaatggcatcaagtgccgctagctcttctatgttt 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  43619078 acgaagtgtatttgctgctgagggaatgtcaagagccttacacatatggtacaactttcctgcatcaatggcatcaagtgctgctagctcttctatgttt 43618979  T
Q  601 tcatcaattaggtctgcaaatttcatcataagttttgctctttcctggtcaacatatatgacttgtcaattttaacatgctgctaaataagacgaaagta 700  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43618978 tcatcaattaggtccgcaaatttcatcataagttttgctctttcctggtcaacatatatgacttgtcaattttaacatgctgctaaataagacgaaagta 43618879  T
Q  701 acataagggaagagaggtgcatcaacccttaaacaaaaatttcttcattgcaatattgcccccctaaatactagcaattgcgca 784  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43618878 acataagggaagagaggtgcatcaacccttaaacaaaaatttcttcattgcaatattgcccccctaaatactagcaattgcgca 43618795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 149; E-Value: 4e-78
Query Start/End: Original strand, 265 - 629
Target Start/End: Complemental strand, 43626692 - 43626328
Alignment:
Q  265 ttagctagatgagcataaaacaaagcagatagaggtgtttgctcagcaggtttgacgaccatggtgcacccagcagctaagcaagggctaaccttgacaa 364  Q
    ||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||  |||||||||||||||||||||||| |||||||||| |||   |    
T  43626692 ttagctagatgggcataaaacaaagcagaaagaggtgtttgttcagcaggtttgagaaccatggtgcacccagcagctaaggaagggctaactttggtga 43626593  T
Q  365 agaacagggaagtgggaaagttccaaggaataatgtgtccaacaacaccaattggttccatcaatgtataagcatggaactctcttgcaacttttaatac 464  Q
    |||| |    |||||||   ||||| ||||| |||||||| |||||||||||||||||||||| ||| || |||||||| |  |  | |  |||||||||    
T  43626592 agaaaaccatagtgggagcattccatggaatgatgtgtcccacaacaccaattggttccatcagtgtgtatgcatggaattggccagaagattttaatac 43626493  T
Q  465 ctctccatgaattttatcagctgcacctgcatagtaacgaagtgtatttgctgctgagggaatgtcaagagccttacacatatggtacaactttcctgca 564  Q
    ||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| |||| ||||||    |||  ||||| ||| || |||    
T  43626492 ctcaccatgaattttatcagcagcacctgcatagtaacgtagtgtatttgctgctgaaggaatttcaaaagccttgttgataaagtacaccttgccagca 43626393  T
Q  565 tcaatggcatcaagtgccgctagctcttctatgttttcatcaattaggtctgcaaatttcatcat 629  Q
    ||||| ||||| | ||  ||||| ||||||||||||||||||||||| |||||||||||||||||    
T  43626392 tcaattgcatctaatgttgctagttcttctatgttttcatcaattagttctgcaaatttcatcat 43626328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 884 - 992
Target Start/End: Complemental strand, 43618721 - 43618613
Alignment:
Q  884 aggtgacatcattattaatctagaacacaaaaacccttcttcttatgccctcatttcgttcattttttagccttctcccactaaagtaaaagcatcatcg 983  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  43618721 aggtgacatcattattaatctagaacacaaaaacccttcttcttatgccctcatttgcttcattttttagccttctcccactaaagtaaaagcatcatcg 43618622  T
Q  984 tcttcatct 992  Q
    |||||||||    
T  43618621 tcttcatct 43618613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 88; E-Value: 1e-41
Query Start/End: Original strand, 1063 - 1158
Target Start/End: Complemental strand, 43618603 - 43618508
Alignment:
Q  1063 ctacgagaaaaggtacccagccctgtgaaagagaaggtggaagcaaagctggaagagcttaaagatgctatttctggtggtttgacccaaactatt 1158  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  43618603 ctacgagaaaaggtacccagccctgtgaaagagaaggtggaagcaaagctggaagagcttaaagatgctatttctggtggttcgaaccaaactatt 43618508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 43626873 - 43626809
Alignment:
Q  5 tgcagcaccagcagtagctccaaatccgggtactacattgatcactccatctgggattccagcct 69  Q
    ||||||||||||||| |  |||||||||||||||||||| | |||||||| |||||| |||||||    
T  43626873 tgcagcaccagcagttggaccaaatccgggtactacattcagcactccatttgggatcccagcct 43626809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 4e-29; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 4e-29
Query Start/End: Original strand, 1055 - 1157
Target Start/End: Original strand, 275016 - 275118
Alignment:
Q  1055 tgaaagagctacgagaaaaggtacccagccctgtgaaagagaaggtggaagcaaagctggaagagcttaaagatgctatttctggtggtttgacccaaac 1154  Q
    ||||||||||| |||||||||||||  ||||||||||||| ||||| ||||||||| ||| |||||||||||||||||||||||||||||  ||||||||    
T  275016 tgaaagagctaggagaaaaggtacctggccctgtgaaagaaaaggttgaagcaaagttggtagagcttaaagatgctatttctggtggttcaacccaaac 275115  T
Q  1155 tat 1157  Q
    |||    
T  275116 tat 275118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 6e-28; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 6e-28
Query Start/End: Original strand, 929 - 1049
Target Start/End: Original strand, 5565152 - 5565280
Alignment:
Q  929 tgccctcatttcgttcatttttt-agccttctcccactaaagtaaaagcatcatcgtcttcatct--------tctacaaaaacccacttgctttccacc 1019  Q
    |||||| |||||| ||||||||| |||||||||||||||||||||||||||||| ||||| ||||        ||||||||| |||||||| ||||||||    
T  5565152 tgcccttatttcgatcattttttcagccttctcccactaaagtaaaagcatcatagtcttaatctcttcgtcctctacaaaa-cccacttgttttccacc 5565250  T
Q  1020 acgccggagttgcaccaccgtcgttgacca 1049  Q
    ||||||||||||||||||||||||||||||    
T  5565251 acgccggagttgcaccaccgtcgttgacca 5565280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 999 - 1055
Target Start/End: Complemental strand, 14175325 - 14175269
Alignment:
Q  999 aaaacccacttgctttccaccacgccggagttgcaccaccgtcgttgaccatcgcgt 1055  Q
    |||||||| |||||||||||||||||||||||||||||  | ||||||||| |||||    
T  14175325 aaaacccatttgctttccaccacgccggagttgcaccattgacgttgaccaccgcgt 14175269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 5e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 265 - 647
Target Start/End: Original strand, 32408372 - 32408754
Alignment:
Q  265 ttagctagatgagcataaaacaaagcagatagaggtgtttgctcagcaggtttgacgaccatggtgcacccagcagctaa-gcaagggctaaccttgaca 363  Q
    ||||| ||||||||||||||||||||||| ||||||||||| |||||||| || |  ||||| || || |||||||| || ||| | || ||||||  ||    
T  32408372 ttagcaagatgagcataaaacaaagcagagagaggtgtttgttcagcaggcttaagaaccatagtacaaccagcagccaaagcaggagc-aaccttagca 32408470  T
Q  364 aagaacagggaagtgggaaagttccaaggaataatgtgtccaacaacaccaattggttccatcaatgtataagcatggaactctcttgcaacttttaata 463  Q
       ||||  | | | ||||| ||||||||||||||||||||||| ||||| ||||| |||||||| ||||| || || ||||| |  |||  |||||| |    
T  32408471 gcaaacatagtactaggaaaattccaaggaataatgtgtccaacgacaccgattggctccatcaaagtatatgcgtgcaactcccgagcaggttttaaaa 32408570  T
Q  464 cctctccatgaattttatcagctgcacctgcatagtaacgaagtgtatttgctgctgagggaatgtcaagagccttacacatatggtacaactttcctgc 563  Q
    |||  || ||||||||||| || ||||| ||||||||||| | | |||||||| ||   |||||||||| ||| || || | |  ||| |  ||||| ||    
T  32408571 ccttgccgtgaattttatccgcagcaccggcatagtaacgtattatatttgctactccaggaatgtcaacagctttgcagaaagtgtatagttttccagc 32408670  T
Q  564 atcaatggcatcaagtgccgctagctcttctatgttttcatcaattaggtctgcaaatttcatcataagttttgctctttcctg 647  Q
    ||| || | ||| | ||| ||||  ||||||||||||| |||||||| ||||||  |||||| ||| | |||||||||| ||||    
T  32408671 atctattgtatctaatgctgctatttcttctatgttttgatcaattaagtctgcccatttcagcattatttttgctcttacctg 32408754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 295 - 434
Target Start/End: Complemental strand, 32433421 - 32433282
Alignment:
Q  295 agaggtgtttgctcagcaggtttgacgaccatggtgcacccagcagctaagcaagggctaaccttgacaaagaacagggaagtgggaaagttccaaggaa 394  Q
    |||||||||||||||||||| || |  ||||| || || |||||||| || |||||   | ||||  |||||||||    ||| || || |||||||| |    
T  32433421 agaggtgtttgctcagcaggcttaagaaccatagtacaaccagcagccaaacaaggagcagccttagcaaagaacataatagttgggaaattccaaggta 32433322  T
Q  395 taatgtgtccaacaacaccaattggttccatcaatgtata 434  Q
    |||||||||||||||||||||| ||||||||||| |||||    
T  32433321 taatgtgtccaacaacaccaataggttccatcaaagtata 32433282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 32407681 - 32407745
Alignment:
Q  5 tgcagcaccagcagtagctccaaatccgggtactacattgatcactccatctgggattccagcct 69  Q
    |||||| || ||||| || |||||||| ||||||||||||| |||||||||||| ||||||||||    
T  32407681 tgcagctcctgcagttgcaccaaatccaggtactacattgagcactccatctggaattccagcct 32407745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 956 - 992
Target Start/End: Original strand, 7854246 - 7854282
Alignment:
Q  956 ttctcccactaaagtaaaagcatcatcgtcttcatct 992  Q
    |||||||||||||||||||||||||||||||||||||    
T  7854246 ttctcccactaaagtaaaagcatcatcgtcttcatct 7854282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 999 - 1049
Target Start/End: Original strand, 257685 - 257735
Alignment:
Q  999 aaaacccacttgctttccaccacgccggagttgcaccaccgtcgttgacca 1049  Q
    |||||||| ||||||||| |||||||||||||  ||||| |||||||||||    
T  257685 aaaacccatttgctttcctccacgccggagttaaaccactgtcgttgacca 257735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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