View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13369_low_13 (Length: 306)
Name: NF13369_low_13
Description: NF13369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13369_low_13 |
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| [»] scaffold0062 (1 HSPs) |
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Alignment Details
Target: scaffold0062 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 6622 - 6304
Alignment:
| Q |
1 |
aacatatgtttatttcttcttccccaaactccatcaacacccaacttcaagttcaccttcttcttcacttgtaattcataatccatcaacaccaactcca |
100 |
Q |
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| T |
6622 |
aacatatgtttatttcttcttccccaaactccatcaacacgcaacttcaagttcaccttcttcttcacttgtaattcataatccatcaacaccaactcca |
6523 |
T |
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| Q |
101 |
atttcatcttcttctccaattttaaatcataatctaatatcacttaactccaacagtgttacagtattactacaacat-------------aatnnnnnn |
187 |
Q |
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| T |
6522 |
atttcatcttcttctccaattttaaatcataatctaatatcacttaactccaacagtgttacagtattactacaacataataaaataaaaaaataaaata |
6423 |
T |
|
| Q |
188 |
nnccattggtagcgttgctgaagaaaatttgaaaaagagaaacaggaattgtgaaaacgagaaacaagaattgagtagaagacggggatcgataaagatg |
287 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6422 |
aaaaattggtagcgttgatgaagaaaatttgaaaaagagaaacaggaattgtgaaaacgagaaacaagaattgagtagaagacggggatagataaagatg |
6323 |
T |
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| Q |
288 |
aaagattgcataataaatt |
306 |
Q |
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| T |
6322 |
aaagattgcataataaatt |
6304 |
T |
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Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 29 - 115
Target Start/End: Complemental strand, 43740994 - 43740907
Alignment:
| Q |
29 |
ctccatcaacacccaacttcaagttcaccttcttcttcacttgtaattcataatccatcaacaccaa-ctccaatttcatcttcttct |
115 |
Q |
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| T |
43740994 |
ctccatcaacacccaacttcaatttcaccttcttcttcacttttaatttataatccatcaacaccaacctccattttcatcttcttct |
43740907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 34 - 115
Target Start/End: Complemental strand, 12398290 - 12398208
Alignment:
| Q |
34 |
tcaacacccaacttcaagttcaccttcttcttcacttgtaattcataatccatcaacaccaa-ctccaatttcatcttcttct |
115 |
Q |
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||||||||||||||||| ||||||||||||||||| | ||||| |||||||||||||||||| ||||| ||| |||||||||| |
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| T |
12398290 |
tcaacacccaacttcaatttcaccttcttcttcacatttaatttataatccatcaacaccaacctccattttgatcttcttct |
12398208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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