View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13369_low_14 (Length: 291)

Name: NF13369_low_14
Description: NF13369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13369_low_14
NF13369_low_14
[»] chr3 (5 HSPs)
chr3 (44-279)||(42450411-42450646)
chr3 (41-174)||(19405740-19405869)
chr3 (104-145)||(13626184-13626225)
chr3 (95-143)||(21695793-21695841)
chr3 (98-145)||(8946171-8946218)
[»] chr2 (8 HSPs)
chr2 (2-72)||(187123-187193)
chr2 (151-239)||(34233604-34233694)
chr2 (56-98)||(35204339-35204380)
chr2 (37-94)||(33058201-33058257)
chr2 (46-113)||(9538560-9538627)
chr2 (104-144)||(21557576-21557616)
chr2 (99-143)||(40500646-40500690)
chr2 (98-142)||(43239974-43240018)
[»] chr5 (7 HSPs)
chr5 (2-70)||(40018176-40018244)
chr5 (91-145)||(14612565-14612620)
chr5 (98-140)||(14627836-14627878)
chr5 (98-147)||(6038268-6038317)
chr5 (201-238)||(23656116-23656153)
chr5 (201-238)||(23802417-23802454)
chr5 (41-177)||(7963773-7963908)
[»] chr6 (2 HSPs)
chr6 (2-69)||(9929710-9929777)
chr6 (98-144)||(34208140-34208186)
[»] scaffold0003 (2 HSPs)
scaffold0003 (84-171)||(325721-325808)
scaffold0003 (77-175)||(325334-325432)
[»] chr7 (3 HSPs)
chr7 (16-70)||(4912124-4912178)
chr7 (56-113)||(48582197-48582254)
chr7 (205-236)||(41936052-41936083)
[»] chr1 (3 HSPs)
chr1 (19-70)||(24314381-24314432)
chr1 (100-145)||(51394968-51395013)
chr1 (106-144)||(16363764-16363802)
[»] scaffold0260 (1 HSPs)
scaffold0260 (104-175)||(20070-20142)
[»] chr4 (2 HSPs)
chr4 (91-143)||(19834705-19834757)
chr4 (201-237)||(50492541-50492577)
[»] scaffold0318 (1 HSPs)
scaffold0318 (56-113)||(2081-2137)
[»] chr8 (2 HSPs)
chr8 (98-143)||(30943432-30943477)
chr8 (104-141)||(40639113-40639150)


Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 44 - 279
Target Start/End: Complemental strand, 42450646 - 42450411
Alignment:
Q  44 gaaagaaaactagcgtgagttaactcatgttgggggttcagtgtgagttttcagcgtgatttaagtcacgtaagttgtatttcaacgtgacttaagtcac 143  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42450646 gaaagaaaactagcgtgagttaactcatgttgggggttcagtgtgaattttcagcgtgatttaagtcacgtaagttgtatttcaacgtgacttaagtcac 42450547  T
Q  144 gtggtgttaacacctgcgtaagttaactcacgcgtgatattttctgaagtttggttggagcgagcaaaacgtgacgggagaagagcaattttcataccat 243  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42450546 gtggtgttaacacctgcgtaagttaactcacgcgtggtattttctgaagtttggttggagcgagcaaaacgtgacgggagaagagcaattttcataccat 42450447  T
Q  244 agtgagtgagagcaaatcctacggcccgggcaacat 279  Q
    |||||||||||| ||||||||||||| |||||||||    
T  42450446 agtgagtgagagaaaatcctacggcctgggcaacat 42450411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 174
Target Start/End: Original strand, 19405740 - 19405869
Alignment:
Q  41 tgagaaagaaaactagcgtgagttaactcatgttgggggttcagtgtgagttttcagcgtgatttaagtcacgtaagttgtatttcaacgtgacttaagt 140  Q
    |||||||||||||  |||| |||||||| | ||||||| || | |||||||||| |||   | |||||||||||| ||||||||||| ||||||||||||    
T  19405740 tgagaaagaaaacctgcgtaagttaactgacgttggggttt-attgtgagtttttagc---acttaagtcacgtaggttgtatttcagcgtgacttaagt 19405835  T
Q  141 cacgtggtgttaacacctgcgtaagttaactcac 174  Q
     |  |||  |||||| |||| |||||||||||||    
T  19405836 aagttgggtttaacatctgcataagttaactcac 19405869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 145
Target Start/End: Complemental strand, 13626225 - 13626184
Alignment:
Q  104 ttaagtcacgtaagttgtatttcaacgtgacttaagtcacgt 145  Q
    |||||||||||| ||||||||||| |||||||||||||||||    
T  13626225 ttaagtcacgtaggttgtatttcagcgtgacttaagtcacgt 13626184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 21695793 - 21695841
Alignment:
Q  95 cagcgtgatttaagtcacgtaagttgtatttcaacgtgacttaagtcac 143  Q
    |||||||| |||||||| | |||||||||| ||||||||||||||||||    
T  21695793 cagcgtgacttaagtcaaggaagttgtattccaacgtgacttaagtcac 21695841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 145
Target Start/End: Complemental strand, 8946218 - 8946171
Alignment:
Q  98 cgtgatttaagtcacgtaagttgtatttcaacgtgacttaagtcacgt 145  Q
    ||||||||||||||||||| |||||||| |  ||||||||||||||||    
T  8946218 cgtgatttaagtcacgtaaattgtattttagagtgacttaagtcacgt 8946171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 187123 - 187193
Alignment:
Q  2 catcatgcattctgtagctattaatttcaagaatgaaaatgagaaagaaaactagcgtgagttaactcatg 72  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  187123 catcatgcattctgtagctattaatttcaagaatgaaaatgagaaagaaaactagcgtgagttaactcatg 187193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 151 - 239
Target Start/End: Original strand, 34233604 - 34233694
Alignment:
Q  151 taacacctgcgtaagttaactcacgcgtga-tattttctgaagtttggttgg-agcgagcaaaacgtgacgggagaagagcaattttcata 239  Q
    |||||||||||| ||||||||||||| ||| ||||||  ||||||||||||| || ||||||||||||| || ||||||| | ||||||||    
T  34233604 taacacctgcgtgagttaactcacgcatgagtattttgggaagtttggttggaagtgagcaaaacgtgatggaagaagagaatttttcata 34233694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 98
Target Start/End: Complemental strand, 35204380 - 35204339
Alignment:
Q  56 gcgtgagttaactcatgttgggggttcagtgtgagttttcagc 98  Q
    ||||||||||||||||||| |||||||||||||| ||||||||    
T  35204380 gcgtgagttaactcatgtt-ggggttcagtgtgaattttcagc 35204339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 33058257 - 33058201
Alignment:
Q  37 aaaatgagaaagaaaactagcgtgagttaactcatgttgggggttcagtgtgagtttt 94  Q
    ||||||||||||||||| ||| ||||||| ||||| || |||||||| ||||||||||    
T  33058257 aaaatgagaaagaaaaccagcttgagttagctcatatt-ggggttcaatgtgagtttt 33058201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 113
Target Start/End: Complemental strand, 9538627 - 9538560
Alignment:
Q  46 aagaaaactagcgtgagttaactcatgttgggggttcagtgtgag-ttttcagcgtgatttaagtcacg 113  Q
    ||||||||||||||||||||||||| | | || |||||||||| | |||||||||||| |||| |||||    
T  9538627 aagaaaactagcgtgagttaactcacgct-ggagttcagtgtgtgtttttcagcgtgaattaactcacg 9538560  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 21557576 - 21557616
Alignment:
Q  104 ttaagtcacgtaagttgtatttcaacgtgacttaagtcacg 144  Q
    ||||||||| || ||||||||||| ||||||||||||||||    
T  21557576 ttaagtcacataggttgtatttcagcgtgacttaagtcacg 21557616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 40500690 - 40500646
Alignment:
Q  99 gtgatttaagtcacgtaagttgtatttcaacgtgacttaagtcac 143  Q
    |||| |||||||||||| |||||||| ||||||||| ||||||||    
T  40500690 gtgacttaagtcacgtaggttgtattccaacgtgacataagtcac 40500646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 43240018 - 43239974
Alignment:
Q  98 cgtgatttaagtcacgtaagttgtatttcaacgtgacttaagtca 142  Q
    ||||| |||||||||||| ||| |||| |||||||||||||||||    
T  43240018 cgtgacttaagtcacgtaggttatattacaacgtgacttaagtca 43239974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 8e-24; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 40018244 - 40018176
Alignment:
Q  2 catcatgcattctgtagctattaatttcaagaatgaaaatgagaaagaaaactagcgtgagttaactca 70  Q
    ||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  40018244 catcatgcatcatgtagctattaatttcaagaaggaaaatgagaaagaaaactagcgtgagttaactca 40018176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 14612565 - 14612620
Alignment:
Q  91 ttttcagcgtgatttaagtcacgtaagttgtat-ttcaacgtgacttaagtcacgt 145  Q
    |||||||||||| |||||||||||| |||||||  ||||| |||||||||||||||    
T  14612565 ttttcagcgtgacttaagtcacgtaggttgtataatcaacatgacttaagtcacgt 14612620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 14627878 - 14627836
Alignment:
Q  98 cgtgatttaagtcacgtaagttgtatttcaacgtgacttaagt 140  Q
    ||||| |||||||||||| ||| ||||||||||||||||||||    
T  14627878 cgtgacttaagtcacgtacgttatatttcaacgtgacttaagt 14627836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 6038268 - 6038317
Alignment:
Q  98 cgtgatttaagtcacgtaagttgtatttcaacgtgacttaagtcacgtgg 147  Q
    ||||| |||||||||||||||||||||||| ||| |||||| ||| ||||    
T  6038268 cgtgacttaagtcacgtaagttgtatttcagcgtaacttaaatcatgtgg 6038317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 23656153 - 23656116
Alignment:
Q  201 gagcgagcaaaacgtgacgggagaagagcaattttcat 238  Q
    ||||||||||||||||| || |||||||||||||||||    
T  23656153 gagcgagcaaaacgtgatggaagaagagcaattttcat 23656116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 23802417 - 23802454
Alignment:
Q  201 gagcgagcaaaacgtgacgggagaagagcaattttcat 238  Q
    ||||||||||||||||| || |||||||||||||||||    
T  23802417 gagcgagcaaaacgtgatggaagaagagcaattttcat 23802454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 177
Target Start/End: Original strand, 7963773 - 7963908
Alignment:
Q  41 tgagaaagaaaactagcgtgagttaactcatgttgggggttcagtgtgagttttcagcgtgatttaagtcacgtaagttgtatttcaacgtgacttaagt 140  Q
    ||||||||||||| ||||| |||||||| | | ||||  || |||||||||||| ||| ||  |||||||||||| |||||||| ||   ||| ||||||    
T  7963773 tgagaaagaaaaccagcgtcagttaacttacgatgggattt-agtgtgagtttttagcatggcttaagtcacgtaggttgtattccagtatgatttaagt 7963871  T
Q  141 cacgtggtgttaacacctgcgtaagttaactcacgcg 177  Q
     |  |||  ||||||| ||||| | ||||||||||||    
T  7963872 aagttgggtttaacacttgcgtgatttaactcacgcg 7963908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 2 - 69
Target Start/End: Complemental strand, 9929777 - 9929710
Alignment:
Q  2 catcatgcattctgtagctattaatttcaagaatgaaaatgagaaagaaaactagcgtgagttaactc 69  Q
    ||||||||||  ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  9929777 catcatgcatcttgtagctattaatttcaagaaggaaaatgagaaagaaaactagtgtgagttaactc 9929710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 34208186 - 34208140
Alignment:
Q  98 cgtgatttaagtcacgtaagttgtatttcaacgtgacttaagtcacg 144  Q
    ||||| |||||||||||| |||||||| |||||||||||||||||||    
T  34208186 cgtgacttaagtcacgtatgttgtattccaacgtgacttaagtcacg 34208140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 84 - 171
Target Start/End: Original strand, 325721 - 325808
Alignment:
Q  84 gtgtgagttttcagcgtgatttaagtcacgtaagttgtatttcaacgtgacttaagtcacgtggtgttaacacctgcgtaagttaact 171  Q
    ||||||||||| ||||||| |||||||| ||| ||||||||||| ||||| |||||| |  |||  ||||||||||||||||||||||    
T  325721 gtgtgagtttttagcgtgacttaagtcatgtaggttgtatttcagcgtgatttaagtaagttggatttaacacctgcgtaagttaact 325808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 175
Target Start/End: Complemental strand, 325432 - 325334
Alignment:
Q  77 gggttcagtgtgagttttcagcgtgatttaagtcacgtaagttgtatttcaacgtgacttaagtcacgtggtgttaacacctgcgtaagttaactcacg 175  Q
    |||||||||||||||||| || |||| |||| ||||||| ||| |||||||  ||||||||||| |  |||  ||||||||||||| ||||||||||||    
T  325432 gggttcagtgtgagtttttagtgtgacttaaatcacgtaggttatatttcagtgtgacttaagtaagttgggtttaacacctgcgtgagttaactcacg 325334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 4912124 - 4912178
Alignment:
Q  16 tagctattaatttcaagaatgaaaatgagaaagaaaactagcgtgagttaactca 70  Q
    |||||||||||||||| || ||||||||||||||||||||| |||||||||||||    
T  4912124 tagctattaatttcaacaaggaaaatgagaaagaaaactagtgtgagttaactca 4912178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 48582254 - 48582197
Alignment:
Q  56 gcgtgagttaactcatgttgggggttcagtgtgagttttcagcgtgatttaagtcacg 113  Q
    ||||||||||||||| | |||||||||||||||| |||||||||||| ||||||||||    
T  48582254 gcgtgagttaactcacgctgggggttcagtgtgaattttcagcgtgacttaagtcacg 48582197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 236
Target Start/End: Original strand, 41936052 - 41936083
Alignment:
Q  205 gagcaaaacgtgacgggagaagagcaattttc 236  Q
    ||||||||||||||||||||||||||||||||    
T  41936052 gagcaaaacgtgacgggagaagagcaattttc 41936083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 24314381 - 24314432
Alignment:
Q  19 ctattaatttcaagaatgaaaatgagaaagaaaactagcgtgagttaactca 70  Q
    |||||||||| ||||| |||||||||||||||||| ||||||||||||||||    
T  24314381 ctattaattttaagaaggaaaatgagaaagaaaacaagcgtgagttaactca 24314432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 145
Target Start/End: Complemental strand, 51395013 - 51394968
Alignment:
Q  100 tgatttaagtcacgtaagttgtatttcaacgtgacttaagtcacgt 145  Q
    |||||||||||||||||||| |||| ||||||||| ||||||||||    
T  51395013 tgatttaagtcacgtaagttatattacaacgtgacctaagtcacgt 51394968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 144
Target Start/End: Original strand, 16363764 - 16363802
Alignment:
Q  106 aagtcacgtaagttgtatttcaacgtgacttaagtcacg 144  Q
    |||||||||| |||||||| |||||||||||||||||||    
T  16363764 aagtcacgtaggttgtattccaacgtgacttaagtcacg 16363802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0260 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 175
Target Start/End: Complemental strand, 20142 - 20070
Alignment:
Q  104 ttaagtcacgtaagttgtatttcaacgtgacttaagtcacg-tggtgttaacacctgcgtaagttaactcacg 175  Q
    |||||||||||| |||||||| ||||||||||||||||||| | |  |||||| ||||||||||||| |||||    
T  20142 ttaagtcacgtaggttgtattccaacgtgacttaagtcacgcttgatttaacatctgcgtaagttaagtcacg 20070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 19834757 - 19834705
Alignment:
Q  91 ttttcagcgtgatttaagtcacgtaagttgtatttcaacgtgacttaagtcac 143  Q
    |||||| ||| |||||||||||||||||||||||||||| | |||||| ||||    
T  19834757 ttttcaacgtaatttaagtcacgtaagttgtatttcaacataacttaaatcac 19834705  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 50492577 - 50492541
Alignment:
Q  201 gagcgagcaaaacgtgacgggagaagagcaattttca 237  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  50492577 gagcgagcaaaacgtgaggggagaagagcagttttca 50492541  T

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Target: scaffold0318 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 113
Target Start/End: Original strand, 2081 - 2137
Alignment:
Q  56 gcgtgagttaactcatgttgggggttcagtgtgagttttcagcgtgatttaagtcacg 113  Q
    ||||||||||||||||| ||| | |||||||||| |||||||||||| ||||| ||||    
T  2081 gcgtgagttaactcatgctggag-ttcagtgtgaattttcagcgtgacttaagccacg 2137  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 30943477 - 30943432
Alignment:
Q  98 cgtgatttaagtcacgtaagttgtatttcaacgtgacttaagtcac 143  Q
    ||||| |||| |||||||| ||||||| ||||||||||||||||||    
T  30943477 cgtgacttaaatcacgtaacttgtattccaacgtgacttaagtcac 30943432  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 141
Target Start/End: Complemental strand, 40639150 - 40639113
Alignment:
Q  104 ttaagtcacgtaagttgtatttcaacgtgacttaagtc 141  Q
    |||||||||||| |||||| ||||||||||||||||||    
T  40639150 ttaagtcacgtaggttgtacttcaacgtgacttaagtc 40639113  T

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