View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13369_low_17 (Length: 260)
Name: NF13369_low_17
Description: NF13369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13369_low_17 |
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| [»] scaffold0069 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 42450771 - 42450986
Alignment:
| Q |
1 |
tgaattcttgagattcctacttttgcttgagttttagattcgttcaaattttgtttttgcatgttctgcctctatttgtgagttattcagattttttgat |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
42450771 |
tgaattcttgagatttctacttttgcttgagttttagattcgttcaaattttgtttttgcgtgttctacctctatttgtgagttattcagattttttgat |
42450870 |
T |
|
| Q |
101 |
tcaactgaaattcattcatttaactgtgctctagttttctttaggtttctttggatttggaaattcacaaagagtaagtgaatttggcatacacgatttt |
200 |
Q |
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||||||||||||| ||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
42450871 |
tcaactgaaattctttcatttgacagtgctctagttttatttaggtttctttggatttggaaattcacaaagagaaagtgaatttggcatatacgatttt |
42450970 |
T |
|
| Q |
201 |
catgttcacataaaga |
216 |
Q |
| |
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|||||||||||||||| |
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| T |
42450971 |
catgttcacataaaga |
42450986 |
T |
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Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 17718742 - 17718916
Alignment:
| Q |
1 |
tgaattcttgagattcctacttttgcttgagttttagattcgttcaaattttgtttttg-catgttctgcctctatttgtgagttattcagattttttga |
99 |
Q |
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|||||||||| ||||||| ||||||||||||||| ||| |||||| ||||||||||| | | |||||||||||| ||| || |||| | ||||||||| | |
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| T |
17718742 |
tgaattcttgtgattcctccttttgcttgagtttcagagtcgttcgaattttgttttagccgtgttctgcctctgtttatgtgttacttagattttttaa |
17718841 |
T |
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| Q |
100 |
tt----caactgaaattcattcatttaactgtgctctagttttctttaggtttctttggatttggaaattcacaa |
170 |
Q |
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| T |
17718842 |
ttgagctatctgaaatgcattcatttgactgtgctctggttttcttgaggcttcttttgatttggaaattcacaa |
17718916 |
T |
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Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 23615593 - 23615767
Alignment:
| Q |
1 |
tgaattcttgagattcctacttttgcttgagttttagattcgttcaaattttgtttttg-catgttctgcctctatttgtgagttattcagattttttga |
99 |
Q |
| |
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|||||||||| ||||||| ||||||||||||||| ||| |||||| ||||||||||| | | |||||||||||| ||| || |||| | ||||||||| | |
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| T |
23615593 |
tgaattcttgtgattcctccttttgcttgagtttcagagtcgttcgaattttgttttagccgtgttctgcctctgtttatgtgttacttagattttttaa |
23615692 |
T |
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| Q |
100 |
tt----caactgaaattcattcatttaactgtgctctagttttctttaggtttctttggatttggaaattcacaa |
170 |
Q |
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| T |
23615693 |
ttgagctatctgaaatgcattcatttgactgtgctctggttttcttgaggcttcttttgatttggaaattcacaa |
23615767 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 23846989 - 23847163
Alignment:
| Q |
1 |
tgaattcttgagattcctacttttgcttgagttttagattcgttcaaattttgtttttg-catgttctgcctctatttgtgagttattcagattttttga |
99 |
Q |
| |
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|||||||||| ||||||| ||||||||||||||| ||| |||||| ||||||||||| | | |||||||||||| ||| || |||| | ||||||||| | |
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| T |
23846989 |
tgaattcttgtgattcctccttttgcttgagtttcagagtcgttcgaattttgttttagccgtgttctgcctctgtttatgtgttacttagattttttaa |
23847088 |
T |
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| Q |
100 |
tt----caactgaaattcattcatttaactgtgctctagttttctttaggtttctttggatttggaaattcacaa |
170 |
Q |
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| T |
23847089 |
ttgagctatctgaaatgcattcatttgactgtgctctggttttcttgaggcttcttttgatttggaaattcacaa |
23847163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 170
Target Start/End: Complemental strand, 17038693 - 17038558
Alignment:
| Q |
40 |
tcgttcaaattttgtttttgca-tgttctgcctctatttgtgagttattcagatttt-----ttgattcaactgaaattcattcatttaactgtgctcta |
133 |
Q |
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||||||||||||||||||||| |||||||||||| |||||| |||||| ||||||| |||| | ||||||| ||||||||| |||| ||||| |
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| T |
17038693 |
tcgttcaaattttgtttttgccgtgttctgcctctgtttgtgtgttatttagatttttttaattgagctatctgaaatgcattcatttgactgcgctctg |
17038594 |
T |
|
| Q |
134 |
gttttctttaggtttctttggatttggaaattcacaa |
170 |
Q |
| |
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||||| |||||| |||||| |||||||||||| |||| |
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| T |
17038593 |
gtttt-tttaggcttcttttgatttggaaatttacaa |
17038558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 9241503 - 9241677
Alignment:
| Q |
1 |
tgaattcttgagattcctacttttgcttgagttttagattcgttcaaattttgtttttgca-tgttctgcctctatttgtgagttattcagattttttga |
99 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||| ||| || ||| ||||||||||| || |||||||||||| ||| || |||| | ||||||||| | |
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| T |
9241503 |
tgaattcttgtgattcctccttttgcttgagtttcagagtcattcgaattttgttttagccgtgttctgcctctgtttatgtgttacttagattttttaa |
9241602 |
T |
|
| Q |
100 |
ttcaact----gaaattcattcatttaactgtgctctagttttctttaggtttctttggatttggaaattcacaa |
170 |
Q |
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|| | || ||||| ||||||||| |||||||||| |||||||| ||| |||||| ||||||||||||||||| |
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| T |
9241603 |
ttgagctatctgaaatgcattcatttgactgtgctctggttttcttgaggcttcttttgatttggaaattcacaa |
9241677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 27857938 - 27857894
Alignment:
| Q |
167 |
acaaagagtaagtgaatttggcatacacgattttcatgttcacat |
211 |
Q |
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|||||||| ||||||||||||| ||||| ||||||||||||||| |
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| T |
27857938 |
acaaagagaaagtgaatttggcttacacagttttcatgttcacat |
27857894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 170
Target Start/End: Original strand, 39728 - 39891
Alignment:
| Q |
12 |
gattcctacttttgcttgagttttagattcgttcaaattttgtttttgca-tgttctgcctctatttgtgagttattcagattttttgattcaact---- |
106 |
Q |
| |
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||||||| ||||||||||||||| ||| || ||| ||||||||||| || |||||||||||| ||| || |||| | ||||||||| ||| | || |
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| T |
39728 |
gattcctccttttgcttgagtttcagagtcattcgaattttgttttagccgtgttctgcctctgtttatgtgttacttagattttttaattgagctatct |
39827 |
T |
|
| Q |
107 |
gaaattcattcatttaactgtgctctagttttctttaggtttctttggatttggaaattcacaa |
170 |
Q |
| |
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||||| ||||||||| ||||||||||||||||||| ||| |||||| ||||||||||||||||| |
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|
| T |
39828 |
gaaatgcattcatttgactgtgctctagttttcttgaggcttcttttgatttggaaattcacaa |
39891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 170
Target Start/End: Complemental strand, 19449402 - 19449355
Alignment:
| Q |
123 |
actgtgctctagttttctttaggtttctttggatttggaaattcacaa |
170 |
Q |
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||||||||||||||||||| ||| |||||| ||||||||||||||||| |
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| T |
19449402 |
actgtgctctagttttcttgaggcttcttttgatttggaaattcacaa |
19449355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 170
Target Start/End: Original strand, 19531674 - 19531721
Alignment:
| Q |
123 |
actgtgctctagttttctttaggtttctttggatttggaaattcacaa |
170 |
Q |
| |
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||||||||||||||||||| ||| |||||| ||||||||||||||||| |
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| T |
19531674 |
actgtgctctagttttcttgaggcttcttttgatttggaaattcacaa |
19531721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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