View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13369_low_18 (Length: 252)
Name: NF13369_low_18
Description: NF13369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13369_low_18 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 13930080 - 13930281
Alignment:
| Q |
1 |
gaggcggtggcgccacacaaatagttcgtcacatagcggtggataataagacagtctgtcacaaactaaattaagcagattttgaaataagtcaatcgag |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
13930080 |
gaggcggcggcgccacacaaatagttcgtcacatagcggtggataataagacagtctgtcacaaactaaattaagcagattttgaaataagtcaattgag |
13930179 |
T |
|
| Q |
101 |
agatatgataaaatggaagaaaagcatattttttgcaattggaagttacactatgataaatggataaacttttgagcaaaactgatggaccgtagagcaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13930180 |
agatatgataaaatggaagaaaagcatattttttgcaatcggaagttacactatgataaatggataaacttttgagcaaaactgatggaccgtagagcaa |
13930279 |
T |
|
| Q |
201 |
tt |
202 |
Q |
| |
|
|| |
|
|
| T |
13930280 |
tt |
13930281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 14044277 - 14044461
Alignment:
| Q |
18 |
caaatagttcgtcacatagcggtggataataagacagtctgtcacaaactaaattaagcagattttgaaataagtcaatcgagagatatgataaaatgga |
117 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14044277 |
caaatagttcgtcacatagatgtggataacaagacagtctgtcacaaactacattaagcagattttgaaataagtcaatcgagagatatgataaaatgga |
14044376 |
T |
|
| Q |
118 |
agaaaagcatattttttgcaattggaagttacactatgataaatggataaacttttgagcaaaactgatggaccgtagagcaatt |
202 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14044377 |
agaaaagcatattttttgcaatcggaagttacactctcataaattgataaacttttgagcaaaactgatggaccgtagagcaatt |
14044461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University