View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13369_low_2 (Length: 624)

Name: NF13369_low_2
Description: NF13369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13369_low_2
NF13369_low_2
[»] chr3 (10 HSPs)
chr3 (18-624)||(53424482-53425089)
chr3 (85-227)||(53431698-53431843)
chr3 (323-429)||(48373647-48373753)
chr3 (520-619)||(48372459-48372558)
chr3 (26-228)||(48373873-48374078)
chr3 (520-624)||(26097502-26097606)
chr3 (508-624)||(53308963-53309079)
chr3 (518-618)||(53432124-53432224)
chr3 (170-221)||(26096526-26096577)
chr3 (513-618)||(53320744-53320849)


Alignment Details
Target: chr3 (Bit Score: 484; Significance: 0; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 18 - 624
Target Start/End: Original strand, 53424482 - 53425089
Alignment:
Q  18 tgtggcagcatcttttgttcttaccacggttgctgggaaatcataatttcttgcctctcctccttcttggtcaataatatgaacaagacctaatccaccc 117  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53424482 tgtggcagcatctcttgttcttaccacggttgctgggaagtcataatttcttgcctctcctccttcttggtcaataatatgaacaagacctaatccaccc 53424581  T
Q  118 atctcttgcaccattttaatcttgtcatagattgtgtaaccatcatctatgccatcacatatgacaatctttcctttgactttgttcgtatctaatgaat 217  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53424582 atctcttgcgccattttaatcttgtcatagattgtgtaaccatcatctatgccatcacatatgacaatctttcctttgactttgttcgtatctaatgaat 53424681  T
Q  218 ttgggtgacacatcctgcatttaacaaacaataataa-nnnnnnngattaattatgcccagcaaacaagtttaagttaatttattgttatggttatgcat 316  Q
    |||||||||||||||||||||||||||||||||||||        ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  53424682 ttgggtgacacatcctgcatttaacaaacaataataattttttttgattaattatgcccaacaaacaagtttaagttaattaattgttatggttatgcat 53424781  T
Q  317 gcttacgtaccttgcttcagctaaatctgcagtagttgtcttgacagcctcgccggttaccagtggataatggggagattttgaaagaggggtgaaattt 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53424782 gcttacgtaccttgcttcagctaaatctgcagtagttgtcttgacagcctcgccggttaccagtggataatggggagattttgaaagaggggtgaaattt 53424881  T
Q  417 atggcttgacccttaacaataacaattatcaaacatgagaaatatatcattgnnnnnnnnnnnnnnnnnnnnnnnnnttgatataccgcagagcgctata 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||                         |||||||||||||||||||||||    
T  53424882 atggcttgacccttaacaataacaattatcaaacatgagaaatatatcattgaaaattaaaaaaattaaaaaataaattgatataccgcagagcgctata 53424981  T
Q  517 gattgtaccttgataactttgttactacccaaaacaatattggactgaagatcacgatcgatagtggtggctgcaacagtcaacatccaaggagcatcat 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53424982 gattgtaccttgataactttgttactacccaaaacaatattggactgaagatcacgatcgatagtggtggctgcaacagtcaacatccaaggagcatcat 53425081  T
Q  617 taataact 624  Q
    ||||||||    
T  53425082 taataact 53425089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 85 - 227
Target Start/End: Original strand, 53431698 - 53431843
Alignment:
Q  85 tggtcaataatatgaacaagacctaatccacccatctcttgcaccattttaatcttgtcatagattgtgtaaccatcatc---tatgccatcacatatga 181  Q
    |||||| ||||||||||||||||||||||||||||| |||||||| ||||||| |||| || | ||| |||| |||||||   ||| |||||||| ||||    
T  53431698 tggtcagtaatatgaacaagacctaatccacccatcccttgcaccgttttaattttgttattggttgagtaatcatcatcacttattccatcacaaatga 53431797  T
Q  182 caatctttcctttgactttgttcgtatctaatgaatttgggtgaca 227  Q
    ||||||||||||||||||| ||| ||| ||||||||||||||||||    
T  53431798 caatctttcctttgacttttttcttatttaatgaatttgggtgaca 53431843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 323 - 429
Target Start/End: Complemental strand, 48373753 - 48373647
Alignment:
Q  323 gtaccttgcttcagctaaatctgcagtagttgtcttgacagcctcgccggttaccagtggataatggggagattttgaaagaggggtgaaatttatggct 422  Q
    |||||||||||||| ||| || ||||||||||||||  ||| ||  || |||| || |||||||| || ||||||||||||||||| |||||||||||||    
T  48373753 gtaccttgcttcagttaagtcagcagtagttgtcttagcagactttccagttatcaatggataatcggcagattttgaaagaggggagaaatttatggct 48373654  T
Q  423 tgaccct 429  Q
    |||||||    
T  48373653 tgaccct 48373647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 520 - 619
Target Start/End: Complemental strand, 48372558 - 48372459
Alignment:
Q  520 tgtaccttgataactttgttactacccaaaacaatattggactgaagatcacgatcgatagtggtggctgcaacagtcaacatccaaggagcatcattaa 619  Q
    |||||||||| |||||||||| ||||||| |||| |||||||||||  ||||| || ||||||||||| ||||| || || |||||||| ||||||||||    
T  48372558 tgtaccttgacaactttgttattacccaagacaacattggactgaaagtcacggtcaatagtggtggcagcaaccgttaatatccaaggtgcatcattaa 48372459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 26 - 228
Target Start/End: Complemental strand, 48374078 - 48373873
Alignment:
Q  26 catcttttgttcttaccacggttgctgggaaatc---ataatttcttgcctctcctccttcttggtcaataatatgaacaagacctaatccacccatctc 122  Q
    ||||||||| ||||||||| ||||||||||| ||   |||| |  ||||| |  |||| || |||||| ||||||||||||||||||||||||||  |||    
T  48374078 catcttttgatcttaccactgttgctgggaagtctgcataaatatttgccacagctccatcctggtcagtaatatgaacaagacctaatccacccgcctc 48373979  T
Q  123 ttgcaccattttaatcttgtcatagattgtgtaaccatcatctatgccatcacatatgacaatctttcctttgactttgttcgtatctaatgaatttggg 222  Q
    ||||||| |  |||| || |||| | |||  ||| || ||||||  ||||| || |||||||| |||||||  ||||| ||| ||||||||||| ||||     
T  48373978 ttgcaccgtcctaattttttcatcggttgaataatcaccatctaccccatcgcagatgacaatatttccttcaacttttttcttatctaatgaacttgga 48373879  T
Q  223 tgacac 228  Q
    ||||||    
T  48373878 tgacac 48373873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 520 - 624
Target Start/End: Original strand, 26097502 - 26097606
Alignment:
Q  520 tgtaccttgataactttgttactacccaaaacaatattggactgaagatcacgatcgatagtggtggctgcaacagtcaacatccaaggagcatcattaa 619  Q
    |||||||||| |||||||||| ||||||| |||| |||||||||||  |||||||| || || ||||| ||||| || |  ||||||||||| |||||||    
T  26097502 tgtaccttgacaactttgttattacccaagacaacattggactgaaagtcacgatcaatggtagtggcagcaaccgttagtatccaaggagcgtcattaa 26097601  T
Q  620 taact 624  Q
     ||||    
T  26097602 caact 26097606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 508 - 624
Target Start/End: Original strand, 53308963 - 53309079
Alignment:
Q  508 agcgctatagattgtaccttgataactttgttactacccaaaacaatattggactgaagatcacgatcgatagtggtggctgcaacagtcaacatccaag 607  Q
    |||| |||| |||||||||  |||||||||  |||||| |||||||  |||||||| | ||||| |||||| || |||||| ||||||| || |||||||    
T  53308963 agcgttataaattgtacctcaataactttgccactacctaaaacaacgttggactgcatatcacaatcgatggtagtggctacaacagttaatatccaag 53309062  T
Q  608 gagcatcattaataact 624  Q
    |||| ||||||| ||||    
T  53309063 gagcgtcattaacaact 53309079  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 518 - 618
Target Start/End: Original strand, 53432124 - 53432224
Alignment:
Q  518 attgtaccttgataactttgttactacccaaaacaatattggactgaagatcacgatcgatagtggtggctgcaacagtcaacatccaaggagcatcatt 617  Q
    ||||||||||||||||||  ||| ||||||| ||||  ||||||||||  ||||| || ||||| |||||  |||| || || |||||||||||||||||    
T  53432124 attgtaccttgataacttctttattacccaagacaacgttggactgaaattcacggtcaatagttgtggcaccaacggttaatatccaaggagcatcatt 53432223  T
Q  618 a 618  Q
    |    
T  53432224 a 53432224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 26096526 - 26096577
Alignment:
Q  170 catcacatatgacaatctttcctttgactttgttcgtatctaatgaatttgg 221  Q
    ||||||||||||||||||||||||||||||| ||| | ||||||||| ||||    
T  26096526 catcacatatgacaatctttcctttgacttttttcttgtctaatgaacttgg 26096577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 513 - 618
Target Start/End: Original strand, 53320744 - 53320849
Alignment:
Q  513 tatagattgtaccttgataactttgttactacccaaaacaatattggactgaagatcacgatcgatagtggtggctgcaacagtcaacatccaaggagca 612  Q
    ||||| |||||||||||| ||||||  | ||||||| |||| ||| ||||| |||||||| || || || |||||| |||| || || ||||| ||||||    
T  53320744 tatagtttgtaccttgatcactttgccattacccaagacaacattagactggagatcacggtcaattgttgtggctccaacggttaatatccagggagca 53320843  T
Q  613 tcatta 618  Q
    ||||||    
T  53320844 tcatta 53320849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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