View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13369_low_20 (Length: 240)

Name: NF13369_low_20
Description: NF13369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13369_low_20
NF13369_low_20
[»] chr4 (17 HSPs)
chr4 (48-230)||(1867890-1868072)
chr4 (2-46)||(1866603-1866647)
chr4 (2-46)||(30266384-30266428)
chr4 (2-46)||(30285760-30285804)
chr4 (2-46)||(47103735-47103779)
chr4 (4-46)||(21544578-21544620)
chr4 (2-46)||(568414-568458)
chr4 (64-127)||(1857307-1857371)
chr4 (2-46)||(29527809-29527853)
chr4 (2-46)||(10574473-10574517)
chr4 (2-46)||(14605979-14606023)
chr4 (2-46)||(45065246-45065290)
chr4 (12-47)||(6482088-6482123)
chr4 (2-36)||(11172966-11173000)
chr4 (2-47)||(1724363-1724408)
chr4 (2-47)||(37349120-37349165)
chr4 (2-46)||(18423587-18423631)
[»] chr8 (7 HSPs)
chr8 (2-46)||(15068640-15068684)
chr8 (2-43)||(8031129-8031170)
chr8 (2-46)||(2183659-2183703)
chr8 (14-46)||(14687402-14687434)
chr8 (2-46)||(40789580-40789624)
chr8 (2-36)||(2189910-2189944)
chr8 (2-46)||(15173933-15173977)
[»] chr7 (12 HSPs)
chr7 (2-46)||(18683970-18684014)
chr7 (2-46)||(31426004-31426048)
chr7 (2-46)||(32546188-32546232)
chr7 (2-46)||(28309488-28309532)
chr7 (5-48)||(29015009-29015052)
chr7 (2-46)||(27063134-27063178)
chr7 (2-46)||(27063330-27063374)
chr7 (2-30)||(2471991-2472019)
chr7 (2-46)||(22973384-22973428)
chr7 (6-46)||(29157349-29157389)
chr7 (2-46)||(30839187-30839231)
chr7 (2-46)||(44845188-44845232)
[»] chr5 (10 HSPs)
chr5 (2-46)||(18116560-18116604)
chr5 (2-46)||(43523750-43523794)
chr5 (2-46)||(12712611-12712655)
chr5 (2-46)||(23045045-23045089)
chr5 (2-40)||(2681207-2681245)
chr5 (2-46)||(12773875-12773919)
chr5 (12-47)||(4920827-4920862)
chr5 (15-47)||(6155971-6156003)
chr5 (2-46)||(12250961-12251005)
chr5 (2-42)||(12915464-12915504)
[»] chr2 (11 HSPs)
chr2 (2-46)||(30978919-30978963)
chr2 (2-46)||(38342572-38342616)
chr2 (2-46)||(3547158-3547202)
chr2 (2-46)||(4427916-4427960)
chr2 (2-46)||(14331519-14331563)
chr2 (2-48)||(42576604-42576650)
chr2 (2-46)||(44057874-44057919)
chr2 (2-46)||(43371545-43371589)
chr2 (12-47)||(9632388-9632423)
chr2 (15-48)||(10920650-10920683)
chr2 (2-46)||(18485640-18485684)
[»] scaffold0184 (1 HSPs)
scaffold0184 (2-46)||(2960-3004)
[»] scaffold0015 (1 HSPs)
scaffold0015 (2-46)||(55950-55994)
[»] scaffold0013 (2 HSPs)
scaffold0013 (2-46)||(105522-105566)
scaffold0013 (2-46)||(128174-128218)
[»] chr6 (6 HSPs)
chr6 (2-46)||(29199938-29199982)
chr6 (2-46)||(18908884-18908928)
chr6 (12-48)||(27738773-27738809)
chr6 (2-46)||(9458654-9458698)
chr6 (2-46)||(9458849-9458893)
chr6 (2-46)||(20611035-20611079)
[»] chr1 (9 HSPs)
chr1 (2-46)||(10450112-10450156)
chr1 (2-46)||(35069942-35069986)
chr1 (3-46)||(23058459-23058502)
chr1 (2-34)||(16237369-16237401)
chr1 (12-47)||(51421860-51421895)
chr1 (2-47)||(9982942-9982987)
chr1 (2-47)||(49741059-49741104)
chr1 (198-230)||(25294924-25294956)
chr1 (14-46)||(48125736-48125768)
[»] scaffold0059 (1 HSPs)
scaffold0059 (2-46)||(70086-70130)
[»] scaffold0005 (1 HSPs)
scaffold0005 (2-46)||(211355-211399)
[»] chr3 (3 HSPs)
chr3 (2-46)||(1772452-1772496)
chr3 (8-44)||(2487792-2487828)
chr3 (2-47)||(17146202-17146247)
[»] scaffold0036 (1 HSPs)
scaffold0036 (14-47)||(33396-33429)
[»] scaffold0008 (2 HSPs)
scaffold0008 (2-46)||(67740-67784)
scaffold0008 (2-46)||(75583-75627)


Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 48 - 230
Target Start/End: Original strand, 1867890 - 1868072
Alignment:
Q  48 ttcaagtaaacaaatatcaagaaactaactctcattgtatgaatgttgacgaataaaaatcttctttcaacaaatgaactcgacgatcaatttaggacca 147  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1867890 ttcaagtaaacaaatatcaagaaactaactctcattgtatcaatgttgacgaataaaaatcttctttcaacaaatgaactcgatgatcaatttaggacca 1867989  T
Q  148 agctagactctccagcgaatcttggtttataagtttaaaggctcaagtttttgttgggtaatcaagtgtgagtgatgatgtcc 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  1867990 agctagactctccagcgaatcttggtttataagtttaaaggctcaagtttttgtcgggtaatcaagtgtgagtgattatgtcc 1868072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 1866647 - 1866603
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  1866647 cattcgggtagagtttgggtatgggttcggggtggatacatatat 1866603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 30266428 - 30266384
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  30266428 cattcaggtagggtttgggtatgggttcggggtggatacatatat 30266384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 30285760 - 30285804
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  30285760 cattcaggtagggtttgggtatgggttcggggtggatacatatat 30285804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 47103735 - 47103779
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  47103735 cattcgggtagggtttgggtatgggttcggggtgggtacatatat 47103779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 21544578 - 21544620
Alignment:
Q  4 ttcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  21544578 ttcgggtagggtttgggtatgggttcggggtgggtacatatat 21544620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 568414 - 568458
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    |||||||||| |||||||||||||||||||||||| |||||||||    
T  568414 cattcgggtaaggtttgggtatgggttcggggtgggtacatatat 568458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 127
Target Start/End: Original strand, 1857307 - 1857371
Alignment:
Q  64 tcaagaaactaactctcatt-gtatgaatgttgacgaataaaaatcttctttcaacaaatgaact 127  Q
    ||||||| |||||||||||| |||| ||||| |||| |||||||| |||||||||||||||||||    
T  1857307 tcaagaacctaactctcatttgtatcaatgtcgacgcataaaaatattctttcaacaaatgaact 1857371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 29527809 - 29527853
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||    
T  29527809 cattcggatagggtttgggtatgggttcggggtgggtacatatat 29527853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 10574517 - 10574473
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    ||||||||||||||||||||||| |||||||| || |||||||||    
T  10574517 cattcgggtagggtttgggtatgagttcggggcgggtacatatat 10574473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 14606023 - 14605979
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    ||||| ||||| ||||||||||||||||||||||| |||||||||    
T  14606023 cattcaggtagagtttgggtatgggttcggggtgggtacatatat 14605979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 45065246 - 45065290
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    ||||||||||||||||||||||| ||||||| ||| |||||||||    
T  45065246 cattcgggtagggtttgggtatgcgttcgggatgggtacatatat 45065290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 6482123 - 6482088
Alignment:
Q  12 gggtttgggtatgggttcggggtggatacatatata 47  Q
    ||||||||||||||||||||||||| ||||||||||    
T  6482123 gggtttgggtatgggttcggggtgggtacatatata 6482088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 11172966 - 11173000
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtgg 36  Q
    |||||||| ||||||||||||||||||||||||||    
T  11172966 cattcgggaagggtttgggtatgggttcggggtgg 11173000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 1724408 - 1724363
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatata 47  Q
    ||||||||  ||||||||||||||||||||||||| ||| ||||||    
T  1724408 cattcgggacgggtttgggtatgggttcggggtgggtacctatata 1724363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 37349120 - 37349165
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatata 47  Q
    ||||||||  |||||||||||||||||| |||||||||| ||||||    
T  37349120 cattcgggacgggtttgggtatgggttcagggtggatacctatata 37349165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 18423587 - 18423631
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    |||||||||||||||| |||||||||||||| ||  |||||||||    
T  18423587 cattcgggtagggtttaggtatgggttcgggatgagtacatatat 18423631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 15068684 - 15068640
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    ||||||||||||||| |||||||||||||||||||||||||||||    
T  15068684 cattcgggtagggttcgggtatgggttcggggtggatacatatat 15068640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 8031129 - 8031170
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacata 43  Q
    ||||||||||||||||||||||||||||| ||||| ||||||    
T  8031129 cattcgggtagggtttgggtatgggttcgaggtgggtacata 8031170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 2183703 - 2183659
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    ||||||||||||||||| ||||| ||||||||||| |||||||||    
T  2183703 cattcgggtagggtttgagtatgagttcggggtgggtacatatat 2183659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 14687402 - 14687434
Alignment:
Q  14 gtttgggtatgggttcggggtggatacatatat 46  Q
    |||||||||||||||||||||||||||||||||    
T  14687402 gtttgggtatgggttcggggtggatacatatat 14687434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 40789580 - 40789624
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    ||||||||||| |||||||||| |||||||||||| |||||||||    
T  40789580 cattcgggtagagtttgggtataggttcggggtgggtacatatat 40789624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 2189944 - 2189910
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtgg 36  Q
    ||||||||||||||||| |||||||||||||||||    
T  2189944 cattcgggtagggtttgagtatgggttcggggtgg 2189910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 15173977 - 15173933
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    |||||||||| |||||| ||||| ||||| |||||||||||||||    
T  15173977 cattcgggtacggtttgagtatgagttcgaggtggatacatatat 15173933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 18683970 - 18684014
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  18683970 cattcgggtagggtttgggtatgggttcgaggtggatacatatat 18684014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 31426004 - 31426048
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  31426004 cattcgggtagggtttgggtatgcgttcggggtggatacatatat 31426048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 32546188 - 32546232
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  32546188 cattcgggtagggtttgggtatgggttcggggtgggtacatatat 32546232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 28309488 - 28309532
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||    
T  28309488 cattcgggtagggtttgggtatgagttcggggtagatacatatat 28309532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 29015052 - 29015009
Alignment:
Q  5 tcgggtagggtttgggtatgggttcggggtggatacatatatat 48  Q
    |||||||||||||| |||||||||||||||||||| ||||||||    
T  29015052 tcgggtagggtttgagtatgggttcggggtggatatatatatat 29015009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 27063134 - 27063178
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    ||||||||||||||||||||||| ||||||||||  |||||||||    
T  27063134 cattcgggtagggtttgggtatgagttcggggtgagtacatatat 27063178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 27063330 - 27063374
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    ||||||||||||||| ||||||| ||||||||||| |||||||||    
T  27063330 cattcgggtagggttggggtatgagttcggggtgggtacatatat 27063374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 2471991 - 2472019
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcg 30  Q
    |||||||||||||||||||||||||||||    
T  2471991 cattcgggtagggtttgggtatgggttcg 2472019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 22973384 - 22973428
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    |||||| |||||||||||||||||||||| ||||| |||| ||||    
T  22973384 cattcgagtagggtttgggtatgggttcgaggtgggtacagatat 22973428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 29157349 - 29157389
Alignment:
Q  6 cgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    ||||||||||||||||| |||||  ||||||||||||||||    
T  29157349 cgggtagggtttgggtacgggtttagggtggatacatatat 29157389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 30839231 - 30839187
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    |||||||||| |||||||| ||| ||||||||| |||||||||||    
T  30839231 cattcgggtaaggtttgggcatgagttcggggtagatacatatat 30839187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 44845232 - 44845188
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    |||||||| |||||||| ||||||||||||||||| || ||||||    
T  44845232 cattcgggcagggtttgtgtatgggttcggggtgggtaaatatat 44845188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 18116604 - 18116560
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  18116604 cattcgggtagggtttgggtatgagttcggggtggatacatatat 18116560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 43523750 - 43523794
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  43523750 cattcgggtagggtttgggtatgagttcggggtggatacatatat 43523794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 12712655 - 12712611
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||    
T  12712655 cattcgggtagggtttgggtatgggttcgaggtgggtacatatat 12712611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 23045089 - 23045045
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    |||||||||||||||| |||||||||||||||||| |||||||||    
T  23045089 cattcgggtagggttttggtatgggttcggggtgggtacatatat 23045045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 2681207 - 2681245
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatac 40  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  2681207 cattcggatagggtttgggtatgggttcggggtggatac 2681245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 12773919 - 12773875
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    ||||||||||||||||| ||||||||||| ||||| |||||||||    
T  12773919 cattcgggtagggtttgagtatgggttcgaggtgggtacatatat 12773875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 4920827 - 4920862
Alignment:
Q  12 gggtttgggtatgggttcggggtggatacatatata 47  Q
    ||||||||||||||||||||||||||||| ||||||    
T  4920827 gggtttgggtatgggttcggggtggatacctatata 4920862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 6156003 - 6155971
Alignment:
Q  15 tttgggtatgggttcggggtggatacatatata 47  Q
    |||||||||||||||||||||| ||||||||||    
T  6156003 tttgggtatgggttcggggtgggtacatatata 6155971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 12250961 - 12251005
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    ||||| |||||||||||||||||||||| | |||| |||||||||    
T  12250961 cattcaggtagggtttgggtatgggttcagagtgggtacatatat 12251005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 12915464 - 12915504
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacat 42  Q
    |||||||||||||||||||||||| ||||| |||| |||||    
T  12915464 cattcgggtagggtttgggtatggcttcggagtgggtacat 12915504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 30978919 - 30978963
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  30978919 catttgggtagggtttgggtatgggttcggggtggatacatatat 30978963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 38342616 - 38342572
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  38342616 cattcgggtagggtttgggtatgggttcggggtgggtacatatat 38342572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 3547158 - 3547202
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    |||||||||||||||||| |||||||||||||||| |||||||||    
T  3547158 cattcgggtagggtttggatatgggttcggggtgggtacatatat 3547202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 4427916 - 4427960
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||    
T  4427916 cattcgggtagggtttgggtatgggttcgaggtggatccatatat 4427960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 14331519 - 14331563
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    |||||||||||||||||||||||||||||| |||| |||||||||    
T  14331519 cattcgggtagggtttgggtatgggttcggagtgggtacatatat 14331563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 42576604 - 42576650
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatatat 48  Q
    ||||||||||||||||| |||||||||| |||||| |||||||||||    
T  42576604 cattcgggtagggtttgtgtatgggttcagggtgggtacatatatat 42576650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 44057874 - 44057919
Alignment:
Q  2 cattcgggtagggtttgggtatgggttc-ggggtggatacatatat 46  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||    
T  44057874 cattcgggtagggtttgggtatgggttcgggggtgggtacatatat 44057919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 43371545 - 43371589
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    ||||||||||||||||||||||| ||| ||||||| |||||||||    
T  43371545 cattcgggtagggtttgggtatgagtttggggtgggtacatatat 43371589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 9632388 - 9632423
Alignment:
Q  12 gggtttgggtatgggttcggggtggatacatatata 47  Q
    ||||||||||||||||||||||||||||| ||||||    
T  9632388 gggtttgggtatgggttcggggtggatacctatata 9632423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 48
Target Start/End: Original strand, 10920650 - 10920683
Alignment:
Q  15 tttgggtatgggttcggggtggatacatatatat 48  Q
    |||||||||||||||||||||||||| |||||||    
T  10920650 tttgggtatgggttcggggtggatacctatatat 10920683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 18485640 - 18485684
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    |||| ||||| ||||||||||||||||| |||||| |||||||||    
T  18485640 catttgggtaaggtttgggtatgggttcagggtgggtacatatat 18485684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 2960 - 3004
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||    
T  2960 cattcgggtagggtttgagtatgggttcggggtgggtacatatat 3004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 55994 - 55950
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    |||||||||||||||||||||||| |||||||||| |||||||||    
T  55994 cattcgggtagggtttgggtatggattcggggtgggtacatatat 55950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 105566 - 105522
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    |||| |||||||||||||||||||||||||||||| |||||||||    
T  105566 catttgggtagggtttgggtatgggttcggggtgggtacatatat 105522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 128218 - 128174
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    |||| |||||||||||||||||||||||||||||| |||||||||    
T  128218 catttgggtagggtttgggtatgggttcggggtgggtacatatat 128174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 29199982 - 29199938
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||    
T  29199982 cattcgggtagagtttgggtatgggttcggggtagatacatatat 29199938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 18908884 - 18908928
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    ||||||||||||||||||||||| ||| ||||||| |||||||||    
T  18908884 cattcgggtagggtttgggtatgagtttggggtgggtacatatat 18908928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 27738773 - 27738809
Alignment:
Q  12 gggtttgggtatgggttcggggtggatacatatatat 48  Q
    ||||||||||||||||||||||||| |||||||||||    
T  27738773 gggtttgggtatgggttcggggtgggtacatatatat 27738809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 9458654 - 9458698
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    |||||||||||| |||||||||| ||||| ||||| |||||||||    
T  9458654 cattcgggtaggatttgggtatgagttcgaggtgggtacatatat 9458698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 9458849 - 9458893
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    ||||||||||| ||||||||||  ||||||||||| |||||||||    
T  9458849 cattcgggtagagtttgggtataagttcggggtgggtacatatat 9458893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 20611079 - 20611035
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    ||||| |||||||| ||||||| | ||||||||||||||||||||    
T  20611079 cattcaggtagggtctgggtatagtttcggggtggatacatatat 20611035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 10450156 - 10450112
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||    
T  10450156 cattcgggtagggtttgggtatgagttcggggtgggtacatatat 10450112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 35069986 - 35069942
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||    
T  35069986 cattcgggtagggtttgagtatgggttcggggtgggtacatatat 35069942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 23058459 - 23058502
Alignment:
Q  3 attcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    |||||||||||||||||||||||||||||||||| ||| |||||    
T  23058459 attcgggtagggtttgggtatgggttcggggtgggtacctatat 23058502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 16237401 - 16237369
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggt 34  Q
    |||||||||||||||||||||||||||||||||    
T  16237401 cattcgggtagggtttgggtatgggttcggggt 16237369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 51421860 - 51421895
Alignment:
Q  12 gggtttgggtatgggttcggggtggatacatatata 47  Q
    ||||||||||||||||||||||||| ||||||||||    
T  51421860 gggtttgggtatgggttcggggtgggtacatatata 51421895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 9982987 - 9982942
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatata 47  Q
    ||||||||  ||||||||||||||||||||||||| ||| ||||||    
T  9982987 cattcgggatgggtttgggtatgggttcggggtgggtacctatata 9982942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 49741104 - 49741059
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatata 47  Q
    ||||||||  ||||||||||||||||||||||||| ||| ||||||    
T  49741104 cattcgggacgggtttgggtatgggttcggggtgggtacctatata 49741059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 230
Target Start/End: Complemental strand, 25294956 - 25294924
Alignment:
Q  198 ttgttgggtaatcaagtgtgagtgatgatgtcc 230  Q
    |||||||||||||||||||||||||| ||||||    
T  25294956 ttgttgggtaatcaagtgtgagtgattatgtcc 25294924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 48125768 - 48125736
Alignment:
Q  14 gtttgggtatgggttcggggtggatacatatat 46  Q
    ||||||||||||||||||||||||||| |||||    
T  48125768 gtttgggtatgggttcggggtggatacctatat 48125736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 70086 - 70130
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    |||| |||||||||||||||||||||| ||||||| |||||||||    
T  70086 catttgggtagggtttgggtatgggtttggggtgggtacatatat 70130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 211355 - 211399
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    ||||| ||||| ||||||||||||||||||||||| |||||||||    
T  211355 cattcaggtagagtttgggtatgggttcggggtgggtacatatat 211399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 1772496 - 1772452
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    ||||||||||||||||| ||||| ||||||||||| |||||||||    
T  1772496 cattcgggtagggtttgtgtatgagttcggggtgggtacatatat 1772452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 2487792 - 2487828
Alignment:
Q  8 ggtagggtttgggtatgggttcggggtggatacatat 44  Q
    ||||||||||||||||||||||||||||| |||||||    
T  2487792 ggtagggtttgggtatgggttcggggtgggtacatat 2487828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 17146247 - 17146202
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatata 47  Q
    |||| ||| |||||||| ||||||||||||||||||||| ||||||    
T  17146247 catttgggaagggtttgtgtatgggttcggggtggatacctatata 17146202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 33396 - 33429
Alignment:
Q  14 gtttgggtatgggttcggggtggatacatatata 47  Q
    ||||||||||||||||||||||| ||||||||||    
T  33396 gtttgggtatgggttcggggtgggtacatatata 33429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 67740 - 67784
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    ||||| |||||||||||||||| || ||||||||| |||||||||    
T  67740 cattcaggtagggtttgggtataggctcggggtgggtacatatat 67784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 75583 - 75627
Alignment:
Q  2 cattcgggtagggtttgggtatgggttcggggtggatacatatat 46  Q
    ||||| |||||||||||||||| || ||||||||| |||||||||    
T  75583 cattcaggtagggtttgggtataggctcggggtgggtacatatat 75627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University