View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13369_low_22 (Length: 237)
Name: NF13369_low_22
Description: NF13369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13369_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 32611613 - 32611835
Alignment:
| Q |
1 |
atagatagaacaaaatgagaaacatttcaaaagcatcatgcttcattctcttcttt---tctatagtatcacttcatgttcaaagccgttttcttcccaa |
97 |
Q |
| |
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||||||| |||||||||||||||||| ||||| | ||||||||| | | |||||| |||||| || ||||||||||||||||||||||||||||||| |
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| T |
32611613 |
atagataaaacaaaatgagaaacattacaaaaatagcatgcttcaatattttctttctttctataatagcacttcatgttcaaagccgttttcttcccaa |
32611712 |
T |
|
| Q |
98 |
taaattgatttccaatggagttgatgatgttcaagcagaagaagattcttatctacttcttaacaatgataatgagaaaggagttattactgaatcttct |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32611713 |
taaattgatttccaatggagttgatgatgttcaagcagaagaagattcatatctacttcttaacaatgataatgacaaaggagttattactgaatcttct |
32611812 |
T |
|
| Q |
198 |
tctaattcagaggagtattgtaa |
220 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
32611813 |
tctaattcagaggagtattgtaa |
32611835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 32629820 - 32630041
Alignment:
| Q |
1 |
atagatagaacaaaatgagaaacatttcaaaagcatcatgcttcattctcttcttt---tctatagtatcacttcatgttcaaagccgttttcttcccaa |
97 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| | ||||||||| | | |||||| |||||| || |||||||||||||||||||||| ||||||| |
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| T |
32629820 |
atagatagaacaaaatgagaaacattacaaaaatagcatgcttcaatattttctttctttctataatagcacttcatgttcaaagccgttta-ttcccaa |
32629918 |
T |
|
| Q |
98 |
taaattgatttccaatggagttgatgatgttcaagcagaagaagattcttatctacttcttaacaatgataatgagaaaggagttattactgaatcttct |
197 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32629919 |
taaattgatttccaatggagttgatgatgttcaagcagaagaagattcatatctacttcttaacaatgataatgacaaaggagttattactgaatcttct |
32630018 |
T |
|
| Q |
198 |
tctaattcagaggagtattgtaa |
220 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
32630019 |
tctaattcagaggagtattgtaa |
32630041 |
T |
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Back To:
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