View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13369_low_3 (Length: 554)
Name: NF13369_low_3
Description: NF13369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13369_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 174 - 501
Target Start/End: Original strand, 40799391 - 40799719
Alignment:
| Q |
174 |
ggtctgccaaatctcacctgttaattttgtgtatggatggtgatccacacaccaacaaaaacatgaagaaataagtttagcaaatttgaaaggccttttc |
273 |
Q |
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| T |
40799391 |
ggtctgccaaatctcacctgttaattttgtgtatggatggtgatccacacaccaacaaaaacatgaagaaataagtttaggaaatttgaaaggccttttc |
40799490 |
T |
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| Q |
274 |
ctcatcactgtattgccacaaactaaggttattctattagaaaggggcataaaagcctaaacaatcacttcaagaagcctatgcaaaaagttatgcctcg |
373 |
Q |
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| T |
40799491 |
ctcatcactgtattgccacaaactaaggttattctattagaaaggggcataaaagcctaaacaatcacttcaagaagcctatgcagaaagttatgcgtcg |
40799590 |
T |
|
| Q |
374 |
ttggcaatttccttttaaatttccttcaatttacctttactacatttactttaaacaattgcatacacgcattccttatttttg-ttttaaaaatcatat |
472 |
Q |
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| T |
40799591 |
ttggcaatttccttttaaatttccttcaatttacctttactacatttactttaaacaattgcatacacgcattccttatttttgcttttaaaaatcatat |
40799690 |
T |
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| Q |
473 |
tccttctttgttgtgttaattattgttcc |
501 |
Q |
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| T |
40799691 |
tccttctttgttgtgttaattgttgttcc |
40799719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 40799224 - 40799328
Alignment:
| Q |
7 |
gagatgaaggaggggaaaagggaggaagaagatggaacaatttgatgtagcctattttcctccaccattaattaaagtgtttaaggtaaatgcaattata |
106 |
Q |
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| T |
40799224 |
gagatgaagaaggggaaaagggaggaagaagatggaacaacttgatgtagcctattttcctcgaccattaattaaagtgtttaaggtaaatgcaattata |
40799323 |
T |
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| Q |
107 |
taggc |
111 |
Q |
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||||| |
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| T |
40799324 |
taggc |
40799328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 497 - 540
Target Start/End: Original strand, 40800724 - 40800767
Alignment:
| Q |
497 |
gttccacagaggaagccacttcttctaacggaacgaattacatg |
540 |
Q |
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| T |
40800724 |
gttccatagaggaagccacttcttctaacggtacgaattacatg |
40800767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 393 - 520
Target Start/End: Complemental strand, 2249574 - 2249446
Alignment:
| Q |
393 |
tttccttcaatttacctttactacatttactttaaacaattgcatacacgcattccttatttttgttttaaa-aatcatattccttctttgttgtgttaa |
491 |
Q |
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| T |
2249574 |
tttccttcaatttaacattaccatatttactataaacacttgcatacacgtgttccttatcttagttgtaaagaagtgtatttcttctttgttgttttaa |
2249475 |
T |
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| Q |
492 |
ttattgttccacagaggaagccacttctt |
520 |
Q |
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| T |
2249474 |
tttttgttccataaaggaagccacttctt |
2249446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 462 - 520
Target Start/End: Complemental strand, 51035649 - 51035591
Alignment:
| Q |
462 |
aaaaatcatattccttctttgttgtgttaattattgttccacagaggaagccacttctt |
520 |
Q |
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| T |
51035649 |
aaaaaacatattccttctttgtagtgttaatttttgttccatagaggaagccacttctt |
51035591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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