View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13369_low_5 (Length: 481)
Name: NF13369_low_5
Description: NF13369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13369_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 42 - 470
Target Start/End: Original strand, 38414860 - 38415296
Alignment:
| Q |
42 |
ctctagctttttagttgaagacatttctatcataaacctta----ggaattggattagaaacatgttccatccaataagaaaagagagaagattcgagga |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38414860 |
ctctagctttttagttgaagacatttctatcataaaccttatataggaattggattggaaacatgttccatccaataagaaaagaga--agattcgagga |
38414957 |
T |
|
| Q |
138 |
attctttcttnnnnnnnnnnn----gattcgaggaattctaaatcgaaagaaatgctagggtcatatgaaaatctggttagccaaaaagaatgaagaagc |
233 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38414958 |
attctttcttcaaaaaaaaaaaaaagattcgaggaattctaaatcgaaagaaatgctagggtcatatgaaaatctggttagccaaaaagaatgaagaagc |
38415057 |
T |
|
| Q |
234 |
aacaagagcagttttcatcctagagatgcgagacattccatgcatgattatgaaaagtttgacaactta-gaggacgtgtcttttgggttccaatctgtg |
332 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
38415058 |
aacaagagcagttgtcatcctagagatgcgagacattccatgcatgattatgaaaagtttgacaacttaagaggacgtgtcttttgggttccaacatgtg |
38415157 |
T |
|
| Q |
333 |
tatccagtctcatttgatatcaagaatttagtccttacctctttaaggaacaaccatgtgtatcgtgaagtaaacttttatacacataggtttgctaata |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38415158 |
tatccagtctcatttgatatcaagaatttagtccttacctctttaaggaacaaccatgtgtatcgtgaagtaaacttttatacacataggtttgctaata |
38415257 |
T |
|
| Q |
433 |
tgaggataacaagtggagatgg-ttgattatttatgatg |
470 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38415258 |
tgaggataacaagtggagatggtttgattatttatgatg |
38415296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University