View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13369_low_6 (Length: 473)
Name: NF13369_low_6
Description: NF13369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13369_low_6 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 370; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Original strand, 41469489 - 41469951
Alignment:
| Q |
1 |
tgcttcaacagtttatcaagggtatgctaatactgaaaagtaaattgttatatatataattgatattggtattccgtttcattgatttagaggcgaaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41469489 |
tgcttcaacagtttatcaagggtatgttaatacttaaa-gtaaattgttatatatataattgatattggtattccgtttcattgatttagaggcgaaaca |
41469587 |
T |
|
| Q |
101 |
ttctggtttttattattatatatatccttttggtgtagcttacattctgttgcattttttaatgannnnnnnnnn---------gtagtttatgtgattt |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
41469588 |
ttctggtttttattattatatatatcctttcggtgtagcttacattctgttgcattttttaatgatttttttttttttttttttgtagtttatgtgattt |
41469687 |
T |
|
| Q |
192 |
cttacttttttatatttcatggtagctaaatctgtttcccattgttcccttagaaatcagcaagatacagcaggttgaacgcgattatctggagagcatg |
291 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
41469688 |
cttacttttttatatttcatggtagttaaatctgtttcacattgttcccttagaaatcagcaaggtacagcaggttgaacgcgattatctggagagcatg |
41469787 |
T |
|
| Q |
292 |
tcgaaggattatgaaaaagccattcttcaactagaagctcggaggaatgagcttatgtcacgtgaaaaggatctgcagaagggtcaagaagataattaca |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41469788 |
tcgaaggattatgaaaaagccattcttcaactagaagctcggaggaatgagcttatgtcacgtgaaaaggatctgcagaagggtcaagaagataattaca |
41469887 |
T |
|
| Q |
392 |
tcgagagaaataagcaatattttcagacgggccatgtaatttcttttagctcttcggatttatg |
455 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41469888 |
tcgagagaaataagcaatattttcagacgggccatgtaatttcttttagctcttcggatttatg |
41469951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 57 - 387
Target Start/End: Original strand, 41476568 - 41476895
Alignment:
| Q |
57 |
taattgatattggtattccgtttcattgatttagaggcgaaacattctggtttttattattatatatatccttttggtgtagctta-cattctgttgcat |
155 |
Q |
| |
|
||||| |||||||||||| ||||||| ||||||||| | |||||||||||||||||||| ||||| | || | | ||| ||||||| ||||||| ||||| |
|
|
| T |
41476568 |
taattaatattggtattctgtttcatggatttagagccaaaacattctggtttttattaatatatctttcttctcggtatagcttaacattctgctgcat |
41476667 |
T |
|
| Q |
156 |
tttttaatgannnnnnnnnngtagtttatgtgatttcttacttttttatatttcatggtagctaaatctgtttcccattgttcccttagaaatcagcaag |
255 |
Q |
| |
|
||| ||||| ||||| || |||||| ||| ||||| |||||| |||||||| | |||||||| ||||||||| ||||||||||||||| |
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|
| T |
41476668 |
tttggaatgatttgtt----gtagtcgatttgattttttaatttttgatattttgtggtagctgagtctgtttcacattgttccattagaaatcagcaag |
41476763 |
T |
|
| Q |
256 |
atacagcaggttgaacgcgattatctggagagcatgtcgaaggattatgaaaaagccattcttcaactagaagctcggaggaatgagcttatgtcacgtg |
355 |
Q |
| |
|
|| | |||||||||||| || |||| ||||| | ||||||||| |||||| ||| | | |||| ||| ||||||||||||| |||| ||| |||| |
|
|
| T |
41476764 |
atgcggcaggttgaacgtgagtatcaggagaaagtatcgaaggatcatgaaatagctaggcaggaactggaaactcggaggaatgaacttaagtcccgtg |
41476863 |
T |
|
| Q |
356 |
aaaaggatctgcagaagggtcaagaagataat |
387 |
Q |
| |
|
||||||||||||||||| |||||| ||||||| |
|
|
| T |
41476864 |
aaaaggatctgcagaagcgtcaagcagataat |
41476895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 57 - 387
Target Start/End: Original strand, 41483622 - 41483938
Alignment:
| Q |
57 |
taattgatattggtattccgtttcattgatttagaggcgaaacattctggtttttattattatatatatccttttggtgtagcttacattctgttgcatt |
156 |
Q |
| |
|
||||| |||||||| ||| ||||| |||||||||||| |||||||||||||||||| || |||||||||| ||||||||||||||||| |||||| |||| |
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|
| T |
41483622 |
taattaatattggtgttctgtttctttgatttagaggtgaaacattctggtttttactactatatatatcattttggtgtagcttacagtctgttacatt |
41483721 |
T |
|
| Q |
157 |
ttttaatgannnnnnnnnngtagtttatgtgatttcttacttttttatatttcatggtagctaaatctgtttcccattgttcccttagaaatcagcaaga |
256 |
Q |
| |
|
|| ||||| |||||| || |||| ||||| |||||||||||||||| | ||||||| ||||| | ||||| |||||||||| |
|
|
| T |
41483722 |
ttggaatga-------tttgtagttgatttgat-------tttttaatatttcatggtagcttagtctgttttattttgtttcattagagatcagcaaga |
41483807 |
T |
|
| Q |
257 |
tacagcaggttgaacgcgattatctggagagcatgtcgaaggattatgaaaaagccattcttcaactagaagctcggaggaatgagcttatgtcacgtga |
356 |
Q |
| |
|
| | |||||||||||| || || | ||||| | || |||||| |||||||||||| || |||| |||||||||||||| |||||||| || ||||| |
|
|
| T |
41483808 |
tgcggcaggttgaacgagagtaccaggagaaagtatctaaggatcatgaaaaagccaggctggaactggaagctcggaggaacgagcttatttcccgtga |
41483907 |
T |
|
| Q |
357 |
aaaggatctgcagaagggtcaagaagataat |
387 |
Q |
| |
|
||||||||||||||| || ||| ||||||| |
|
|
| T |
41483908 |
gaaggatctgcagaagcgtgaagtagataat |
41483938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 203 - 455
Target Start/End: Original strand, 40750960 - 40751212
Alignment:
| Q |
203 |
atatttcatggtagctaaatctgtttcccattgttcccttagaaatcagcaagatacagcaggttgaacgcgattatctggagagcatgtcgaaggatta |
302 |
Q |
| |
|
|||||||||||||||| | |||||||| |||||| | ||||||||||||||||| | |||||||||| |||| |||| ||||| | || |||||| | |
|
|
| T |
40750960 |
atatttcatggtagctgagtctgtttcatattgtttcattagaaatcagcaagatgcggcaggttgaatgcgagtatcaggagaaagtatctaaggatca |
40751059 |
T |
|
| Q |
303 |
tgaaaaagccattcttcaactagaagctcggaggaatgagcttatgtcacgtgaaaaggatctgcagaagggtcaagaagataattacatcgagagaaat |
402 |
Q |
| |
|
||||||| ||| || |||| ||||||||||||||||| |||||||| ||||| |||||||| |||||| |||||| ||||||| ||| ||||||| |
|
|
| T |
40751060 |
tgaaaaatccaggctggaactggaagctcggaggaatgaacttatgtcccgtgagaaggatctacagaagcgtcaagcagataatcacaatgagagaacc |
40751159 |
T |
|
| Q |
403 |
aagcaatattttcagacgggccatgtaatttcttttagctcttcggatttatg |
455 |
Q |
| |
|
|||| ||||||| ||| | |||||||| | |||| |||||| | ||||||| |
|
|
| T |
40751160 |
aagctatattttgagaagaaacatgtaatgtattttggctctttgaatttatg |
40751212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 158
Target Start/End: Original strand, 40750828 - 40750929
Alignment:
| Q |
57 |
taattgatattggtattccgtttcattgatttagaggcgaaacattctggtttttattattatatatatccttttggtgtagcttacattctgttgcatt |
156 |
Q |
| |
|
||||| |||| |||||||||| |||| |||||||||| |||||| | | ||||||| || || | |||| ||||||||||||||||||||| ||||||| |
|
|
| T |
40750828 |
taattaatatcggtattccgtctcatcgatttagaggtgaaacactatcgtttttactactacacctatcattttggtgtagcttacattctattgcatt |
40750927 |
T |
|
| Q |
157 |
tt |
158 |
Q |
| |
|
|| |
|
|
| T |
40750928 |
tt |
40750929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 197 - 455
Target Start/End: Complemental strand, 16413508 - 16413250
Alignment:
| Q |
197 |
ttttttatatttcatggtagctaaatctgtttcccattgttcccttagaaatcagcaagatacagcaggttgaacgcgattatctggagagcatgtcgaa |
296 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||| | ||||||||||||||||||||| |||||||| |||| |
|
|
| T |
16413508 |
ttttttatatttcatggtagctaagtctgtttcacattgttccgttagaaatcagcaagatgcggcaggttgaacgcgattatcttgagagcataacgaa |
16413409 |
T |
|
| Q |
297 |
ggattatgaaaaagccattcttcaactagaagctcggaggaatgagcttatgtcacgtgaaaaggatctgcagaagggtcaagaagataattacatcgag |
396 |
Q |
| |
|
|||| | ||||||||||| || |||| ||||| | ||||||||| ||||||| ||| |||||||||||||||||| | |||||||||||| |||| | | |
|
|
| T |
16413408 |
ggatcaagaaaaagccatactggaactggaagcgctgaggaatgaacttatgttacgagaaaaggatctgcagaagcgacaagaagataatcacattgtg |
16413309 |
T |
|
| Q |
397 |
agaaataagcaatattttcagacgggccatgtaatttcttttagctcttcggatttatg |
455 |
Q |
| |
|
|||||||||| ||||||||| || |||||||||| ||||||||||| | ||||||| |
|
|
| T |
16413308 |
agaaataagctatattttcaaacaaaacatgtaatttattttagctctttgaatttatg |
16413250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 203 - 411
Target Start/End: Complemental strand, 16409078 - 16408870
Alignment:
| Q |
203 |
atatttcatggtagctaaatctgtttcccattgttcccttagaaatcagcaagatacagcaggttgaacgcgattatctggagagcatgtcgaaggatta |
302 |
Q |
| |
|
||||||||||||| || |||||||| |||||||| ||||||||||||||||| | ||||||||||||||| |||| ||||| || || |||||| | |
|
|
| T |
16409078 |
atatttcatggtaactgtgtctgtttcatattgttccattagaaatcagcaagatgcggcaggttgaacgcgagtatcaggagaaaatatccaaggatca |
16408979 |
T |
|
| Q |
303 |
tgaaaaagccattcttcaactagaagctcggaggaatgagcttatgtcacgtgaaaaggatctgcagaagggtcaagaagataattacatcgagagaaat |
402 |
Q |
| |
|
||||||||||| || ||||||||||| ||| |||||||||||||| ||||||||||||||||||||| |||||| ||||||| ||| ||||||||| |
|
|
| T |
16408978 |
tgaaaaagccaggctggaactagaagcttggaaaaatgagcttatgtcccgtgaaaaggatctgcagaagcgtcaagcagataatcacaatgagagaaat |
16408879 |
T |
|
| Q |
403 |
aagcaatat |
411 |
Q |
| |
|
|||| |||| |
|
|
| T |
16408878 |
aagctatat |
16408870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 211 - 411
Target Start/End: Original strand, 52471849 - 52472049
Alignment:
| Q |
211 |
tggtagctaaatctgtttcccattgttcccttagaaatcagcaagatacagcaggttgaacgcgattatctggagagcatgtcgaaggattatgaaaaag |
310 |
Q |
| |
|
|||||||| | | |||||| ||||||||| ||||||||||||||||| | ||| ||||||||| | |||||||| | ||||| |||||| ||||||||| |
|
|
| T |
52471849 |
tggtagcttagtttgtttcacattgttccattagaaatcagcaagatgcggcaagttgaacgcaactatctggaaaatatgtctaaggatcatgaaaaag |
52471948 |
T |
|
| Q |
311 |
ccattcttcaactagaagctcggaggaatgagcttatgtcacgtgaaaaggatctgcagaagggtcaagaagataattacatcgagagaaataagcaata |
410 |
Q |
| |
|
|||| | |||| |||||| |||||||||| |||||||| ||||||| ||||||||||||| |||||| ||||||| ||| ||||| ||||||| ||| |
|
|
| T |
52471949 |
ccatgttggaactggaagctaggaggaatgaacttatgtcccgtgaaatggatctgcagaagcgtcaagtagataatgacaatgagagcaataagctata |
52472048 |
T |
|
| Q |
411 |
t |
411 |
Q |
| |
|
| |
|
|
| T |
52472049 |
t |
52472049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 16409183 - 16409115
Alignment:
| Q |
63 |
atattggtattccgtttcattgatttagaggcgaaacattctggtttttattattatatatatcctttt |
131 |
Q |
| |
|
||||| |||||| ||||| |||||||||||| |||||||||| ||||||||| |||||| ||||||||| |
|
|
| T |
16409183 |
atatttgtattctgtttctttgatttagaggtgaaacattcttgtttttattgttatatgtatcctttt |
16409115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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