View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13369_low_7 (Length: 452)
Name: NF13369_low_7
Description: NF13369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13369_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 132 - 435
Target Start/End: Original strand, 31952826 - 31953129
Alignment:
| Q |
132 |
aatcatggttttaaacaaacggtaagcgatcagtatcacggcataaagtttttgatgtctctgcaaccgctgttaagacggtcatgttagtatcattcga |
231 |
Q |
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|||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
31952826 |
aatcatggttttaaacaaacggcatgcgatcagtatcacaatataaagtttttgatgtctctgcaaccgttgttaagacggtcacattagtatcattcga |
31952925 |
T |
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| Q |
232 |
ctgctctctataatatcaaagatcgcgacacggtccaatttaaaattatcttaataaacctaataaccatatagcaaattgcttaacatatcttgcaaca |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31952926 |
ctgctctctataatatcaaagatcgcgacacggtccaatttaaaattatcttaataaacctaataaccatatagcaaattgcttaacatatcttgcaaca |
31953025 |
T |
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| Q |
332 |
ataaccatgtgcacnnnnnnnnnnnnnnnnnnncatgttccttgtaaaacaacatacttatataacacaaatagcatactaaaacttgaatgatataaca |
431 |
Q |
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| T |
31953026 |
ctaaccatgtacacaaaaatgaaaagaaaaaatcatgttccttgtaaaacaacatacttatgtaacacaaataacatactaaaacttgaatgatataaca |
31953125 |
T |
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| Q |
432 |
taac |
435 |
Q |
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|||| |
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| T |
31953126 |
taac |
31953129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 12 - 137
Target Start/End: Original strand, 31952620 - 31952747
Alignment:
| Q |
12 |
tcatcaattgctttgtatactgtcttcattgccccttttccaagaacatctccaaactaaccaatcacacagaac--acaatatttgtcacattaattct |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
31952620 |
tcatcaattgctttgtatactgtcttcattgccccttttccaagaacatctccaaactaatcaatcacacagaacatacaatatttgtcacattaattcc |
31952719 |
T |
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| Q |
110 |
atcatatgagacagtttctttcaatcat |
137 |
Q |
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|| ||||||||| ||||||||||||||| |
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| T |
31952720 |
attatatgagacggtttctttcaatcat |
31952747 |
T |
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