View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13369_low_8 (Length: 447)

Name: NF13369_low_8
Description: NF13369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13369_low_8
NF13369_low_8
[»] chr6 (15 HSPs)
chr6 (43-431)||(4506838-4507242)
chr6 (117-335)||(4483654-4483867)
chr6 (150-421)||(4513789-4514060)
chr6 (149-332)||(4627199-4627382)
chr6 (149-332)||(4623356-4623539)
chr6 (144-332)||(4259072-4259260)
chr6 (144-332)||(4298394-4298582)
chr6 (367-428)||(4483592-4483653)
chr6 (295-375)||(4558320-4558400)
chr6 (152-315)||(4255552-4255715)
chr6 (295-375)||(4572161-4572241)
chr6 (367-428)||(4496104-4496165)
chr6 (150-198)||(4517390-4517438)
chr6 (295-375)||(4581209-4581289)
chr6 (295-375)||(4586827-4586907)
[»] chr8 (1 HSPs)
chr8 (149-373)||(20862659-20862883)
[»] scaffold0288 (1 HSPs)
scaffold0288 (143-372)||(2310-2539)
[»] scaffold0477 (1 HSPs)
scaffold0477 (152-332)||(3418-3598)
[»] scaffold0475 (1 HSPs)
scaffold0475 (292-372)||(2013-2093)


Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 43 - 431
Target Start/End: Original strand, 4506838 - 4507242
Alignment:
43 acacacacatatatatattacggttttaaatcaccattacatccaaatgctgatgtgagccttttctcaaaacc----------------cacacacttc 126  Q
    ||||||| | ||||||||||  ||||||||||||||||| | |||||||||| ||||||||||||||||||| |                ||||||||||    
4506838 acacacataaatatatattaatgttttaaatcaccattagaaccaaatgctgctgtgagccttttctcaaaatcttgactcacacacacacacacacttc 4506937  T
127 tcttagggagagataaaagaacttgttacctttgagtgggatgagacctttctcaatcaatgtacgaaagtgtaaaacagacatgaaagaacaagcacta 226  Q
    |||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4506938 tcttagggagagataatagaacttgttacctttgagtggtacgagacctttctcaatcaatgtacgaaagtgtaaaacagacatgaaagaacaagcacta 4507037  T
227 aatgggacaaggagaacaattggaagtgcaagttcttcggcaacttttatggtaaatgacaatagacaatcagaaactaagcaagtaacaggaggaacaa 326  Q
    ||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
4507038 aatgggacaaggagaacaattggaagtgcaaattcttcagcaactcttatggtaaatgacaagagacaatcagaaactaagcaagtaacaggaggcacaa 4507137  T
327 gaccagattttgcagattcatcaagtctagctagaagttcgcgaaaagggtaaatgaatttatttctaatcgattcacgaatagatttcaagtctggatt 426  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
4507138 gaccagatttcgcagagtcatcaagtctagctagaagttcgcgaaaagggtaaataaatttctttctaatcgattcacgaatagatttcaagtctggatt 4507237  T
427 aacat 431  Q
    |||||    
4507238 aacat 4507242  T

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Target: chr6; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 117 - 335
Target Start/End: Complemental strand, 4483867 - 4483654
Alignment:
117 cacacacttctcttagggagagataaaagaac-----ttgttacctttgagtgggatgagacctttctcaatcaatgtacgaaagtgtaaaacagacatg 211  Q
    ||||||||||||||||| ||||| ||||||||     ||| ||||||| ||||| |||| |||||||||||||||||||||||| ||||||||||||| |    
4483867 cacacacttctcttaggaagagagaaaagaacataagttgctacctttcagtggtatgaaacctttctcaatcaatgtacgaaaatgtaaaacagacaag 4483768  T
212 aaagaacaagcactaaatgggacaaggagaacaattggaagtgcaagttcttcggcaacttttatggtaaatgacaatagacaatcagaaactaagcaag 311  Q
    ||||||||  |||||||| |||||||||||||  |||||||||||||||||||  |||||| ||||||||||||||           |||||||||||||    
4483767 aaagaacatacactaaataggacaaggagaaccgttggaagtgcaagttcttcaacaacttgtatggtaaatgaca----------tgaaactaagcaag 4483678  T
312 taacaggaggaacaagaccagatt 335  Q
    |||||||||| |||||||||||||    
4483677 taacaggaggcacaagaccagatt 4483654  T

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Target: chr6; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 150 - 421
Target Start/End: Complemental strand, 4514060 - 4513789
Alignment:
150 tgttacctttgagtgggatgagacctttctcaatcaatgtacgaaagtgtaaaacagacatgaaagaacaagcactaaatgggacaaggagaacaattgg 249  Q
    |||||||||||||||| ||||||||||||||||| | || |||||||||||||| ||||| |||||||||||||||  | |||| || ||  || |||||    
4514060 tgttacctttgagtggtatgagacctttctcaataagtgcacgaaagtgtaaaatagacaggaaagaacaagcacttgacgggaaaaagatcactattgg 4513961  T
250 aagtgcaagttcttcggcaacttttatggtaaatgacaatagacaatcagaaactaagcaagtaacaggaggaacaagaccagattttgcagattcatca 349  Q
     |||||||||||||| ||||||| | | ||||||| ||  | |||||||||||||||||||||||||  ||| | |||||| | ||||||||| |||| |    
4513960 gagtgcaagttcttcagcaacttgtgtagtaaatggcataatacaatcagaaactaagcaagtaacaaaaggtataagaccggcttttgcagagtcatta 4513861  T
350 agtctagctagaagttcgcgaaaagggtaaatgaatttatttctaatcgattcacgaatagatttcaagtct 421  Q
    ||| |||||| ||||||||||||||| |  ||| | || ||||| || ||||| |||| |||| ||||||||    
4513860 agtttagctaaaagttcgcgaaaaggttcgatgcaattctttctgattgattcgcgaagagatatcaagtct 4513789  T

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Target: chr6; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 149 - 332
Target Start/End: Original strand, 4627199 - 4627382
Alignment:
149 ttgttacctttgagtgggatgagacctttctcaatcaatgtacgaaagtgtaaaacagacatgaaagaacaagcactaaatgggacaaggagaacaattg 248  Q
    ||||||||||||||||| || |||||||| |||| || |||||||||||| |||| ||||| ||||||||| |||||| | |    || |||| ||||||    
4627199 ttgttacctttgagtggtattagacctttttcaaacagtgtacgaaagtgcaaaatagacaagaaagaacatgcactagaagtagaaaagagagcaattg 4627298  T
249 gaagtgcaagttcttcggcaacttttatggtaaatgacaatagacaatcagaaactaagcaagtaacaggaggaacaagaccag 332  Q
    | |||||| ||||||| ||| ||| |||||||||||||| || |||||| ||||||||||||||||| || | |||||||||||    
4627299 ggagtgcatgttcttcagcagcttgtatggtaaatgacattaaacaatctgaaactaagcaagtaactggtgcaacaagaccag 4627382  T

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Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 149 - 332
Target Start/End: Original strand, 4623356 - 4623539
Alignment:
149 ttgttacctttgagtgggatgagacctttctcaatcaatgtacgaaagtgtaaaacagacatgaaagaacaagcactaaatgggacaaggagaacaattg 248  Q
    ||||||||||||||||| || ||||||||||||| || |||| |||||||||||||||||| ||| | ||  ||||||  ||||   | || ||||||||    
4623356 ttgttacctttgagtggtattagacctttctcaaacagtgtatgaaagtgtaaaacagacaagaaggtacttgcactagctggggagaagaaaacaattg 4623455  T
249 gaagtgcaagttcttcggcaacttttatggtaaatgacaatagacaatcagaaactaagcaagtaacaggaggaacaagaccag 332  Q
    | |||||| | ||||| ||| ||| ||| ||||||||||    |||||| ||||||||||||||||| || |||||||||||||    
4623456 ggagtgcatgctcttcagcagcttgtattgtaaatgacatgtaacaatcggaaactaagcaagtaactggtggaacaagaccag 4623539  T

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Target: chr6; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 144 - 332
Target Start/End: Complemental strand, 4259260 - 4259072
Alignment:
144 agaacttgttacctttgagtgggatgagacctttctcaatcaatgtacgaaagtgtaaaacagacatgaaagaacaagcactaaatgg-gacaaggagaa 242  Q
    |||| ||||||||||||||||| || |||||||| |||| || ||||||||||||||||||||||| ||| | ||  ||||||  ||| || || || ||    
4259260 agaaattgttacctttgagtggtattagacctttttcaaacagtgtacgaaagtgtaaaacagacaagaaggtacttgcactagctggagagaa-gaaaa 4259162  T
243 caattggaagtgcaagttcttcggcaacttttatggtaaatgacaatagacaatcagaaactaagcaagtaacaggaggaacaagaccag 332  Q
    ||||||| |||||| | ||||| ||| ||| |||  |||||||||    ||||||||||||||||||||||||||| ||||||| |||||    
4259161 caattgggagtgcatgctcttcagcagcttgtatactaaatgacatgtaacaatcagaaactaagcaagtaacaggtggaacaataccag 4259072  T

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Target: chr6; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 144 - 332
Target Start/End: Complemental strand, 4298582 - 4298394
Alignment:
144 agaacttgttacctttgagtgggatgagacctttctcaatcaatgtacgaaagtgtaaaacagacatgaaagaacaagcactaaatgggacaaggagaac 243  Q
    |||| ||||||||||| ||||| || ||||||||||||||||  ||||||||||| ||| |   || ||| ||||| ||||||  |||   || |||||     
4298582 agaaattgttacctttaagtggaattagacctttctcaatcagcgtacgaaagtgcaaagctaccaagaaggaacatgcactagctggacaaaagagaat 4298483  T
244 aattggaagtgcaagttcttcggcaacttttatggtaaatgacaatagacaatcagaaactaagcaagtaacaggaggaacaagaccag 332  Q
    |||||| |||||| ||||||| ||| ||| |||||||||||||| || | |||||| ||||||||||||||| || || ||||||||||    
4298482 aattgggagtgcatgttcttccgcagcttgtatggtaaatgacattaaaaaatcagcaactaagcaagtaactggtggtacaagaccag 4298394  T

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Target: chr6; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 367 - 428
Target Start/End: Complemental strand, 4483653 - 4483592
Alignment:
367 gcgaaaagggtaaatgaatttatttctaatcgattcacgaatagatttcaagtctggattaa 428  Q
    |||||||| |||||||||||||||||||||||||||||||  ||||| ||||||||||||||    
4483653 gcgaaaagtgtaaatgaatttatttctaatcgattcacgacgagattgcaagtctggattaa 4483592  T

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Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 295 - 375
Target Start/End: Original strand, 4558320 - 4558400
Alignment:
295 atcagaaactaagcaagtaacaggaggaacaagaccagattttgcagattcatcaagtctagctagaagttcgcgaaaagg 375  Q
    ||||||||||| ||||||||| ||||| |||||||||||| ||||||| ||||  |||||||| ||||||||||| |||||    
4558320 atcagaaactatgcaagtaactggagggacaagaccagatgttgcagagtcatttagtctagcaagaagttcgcggaaagg 4558400  T

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Target: chr6; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 152 - 315
Target Start/End: Complemental strand, 4255715 - 4255552
Alignment:
152 ttacctttgagtgggatgagacctttctcaatcaatgtacgaaagtgtaaaacagacatgaaagaacaagcactaaatgggacaaggagaacaattggaa 251  Q
    ||||| |||| ||| || |||||||||| || || |||||| ||||||||| |||| | |||   ||| ||| ||  ||||  ||||||||||||||| |    
4255715 ttaccattgaatggtattagacctttcttaaacagtgtacggaagtgtaaagcagagaagaacatacatgcaatatctggggaaaggagaacaattggga 4255616  T
252 gtgcaagttcttcggcaacttttatggtaaatgacaatagacaatcagaaactaagcaagtaac 315  Q
    ||||| | ||||| ||| ||| ||||||||||||||    ||||||||||||||||||||||||    
4255615 gtgcatgctcttcagcagcttgtatggtaaatgacatgtaacaatcagaaactaagcaagtaac 4255552  T

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Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 295 - 375
Target Start/End: Original strand, 4572161 - 4572241
Alignment:
295 atcagaaactaagcaagtaacaggaggaacaagaccagattttgcagattcatcaagtctagctagaagttcgcgaaaagg 375  Q
    ||||||||||| |||| |||| ||| | |||||||||||| ||||||| |||| ||||||||| ||||||||||| |||||    
4572161 atcagaaactatgcaactaactggacggacaagaccagatgttgcagagtcattaagtctagcaagaagttcgcggaaagg 4572241  T

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Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 367 - 428
Target Start/End: Original strand, 4496104 - 4496165
Alignment:
367 gcgaaaagggtaaatgaatttatttctaatcgattcacgaatagatttcaagtctggattaa 428  Q
    ||||||||||||||| |||  |||||||||||||||||||  ||||| ||||||||||||||    
4496104 gcgaaaagggtaaataaataaatttctaatcgattcacgacgagattgcaagtctggattaa 4496165  T

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Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 150 - 198
Target Start/End: Original strand, 4517390 - 4517438
Alignment:
150 tgttacctttgagtgggatgagacctttctcaatcaatgtacgaaagtg 198  Q
    |||||||||||||||| |||| |||||| ||||||||||||||||||||    
4517390 tgttacctttgagtggtatgacacctttatcaatcaatgtacgaaagtg 4517438  T

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Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 375
Target Start/End: Original strand, 4581209 - 4581289
Alignment:
295 atcagaaactaagcaagtaacaggaggaacaagaccagattttgcagattcatcaagtctagctagaagttcgcgaaaagg 375  Q
    ||||||||||| ||||||||| ||||| |||||||||||  | ||||| |||| ||||||||| |||||||| | ||||||    
4581209 atcagaaactatgcaagtaactggagggacaagaccagaagtggcagagtcattaagtctagcaagaagttcacaaaaagg 4581289  T

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Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 375
Target Start/End: Original strand, 4586827 - 4586907
Alignment:
295 atcagaaactaagcaagtaacaggaggaacaagaccagattttgcagattcatcaagtctagctagaagttcgcgaaaagg 375  Q
    |||||||||||  ||||| || ||||| | |||||||||| ||||||| |||| ||||||||| ||||||||||| |||||    
4586827 atcagaaactatacaagtgactggagggataagaccagatgttgcagagtcattaagtctagcaagaagttcgcggaaagg 4586907  T

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Target: chr8 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 149 - 373
Target Start/End: Complemental strand, 20862883 - 20862659
Alignment:
149 ttgttacctttgagtgggatgagacctttctcaatcaatgtacgaaagtgtaaaacagacatgaaagaacaagcactaaatgggacaaggagaacaattg 248  Q
    |||||||||||||| || |||| ||||||||||||||||||||| || |||||| |||||| |||||||||||||||| |||||| ||||||||||||||    
20862883 ttgttacctttgaggggtatgacacctttctcaatcaatgtacgtaaatgtaaagcagacaagaaagaacaagcactagatgggataaggagaacaattg 20862784  T
249 gaagtgcaagttcttcggcaacttttatggtaaatgacaatagacaatcagaaactaagcaagtaacaggaggaacaagaccagattttgcagattcatc 348  Q
    | |||||||||||||| ||||||| |||||||| |||||  | || ||||||||||||||||||||||||||| | |||||||||||| | ||| ||||     
20862783 ggagtgcaagttcttcagcaacttgtatggtaactgacatgaaactatcagaaactaagcaagtaacaggaggtataagaccagatttggaagagtcatg 20862684  T
349 aagtctagctagaagttcgcgaaaa 373  Q
    |||| | || |||||||| ||||||    
20862683 aagtttggcaagaagttcacgaaaa 20862659  T

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Target: scaffold0288 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 143 - 372
Target Start/End: Complemental strand, 2539 - 2310
Alignment:
143 aagaacttgttacctttgagtgggatgagacctttctcaatcaatgtacgaaagtgtaaaacagacatgaaagaacaagcactaaatgggacaaggagaa 242  Q
    ||||| ||||||||||||||||| || |||||||| ||||||| ||| ||||||||  ||||||||| ||| || || ||||||  |||   |   ||||    
2539 aagaaattgttacctttgagtggtattagacctttgtcaatcagtgtgcgaaagtgcgaaacagacaagaaggagcatgcactacctggcgaataaagaa 2440  T
243 caattggaagtgcaagttcttcggcaacttttatggtaaatgacaatagacaatcagaaactaagcaagtaacaggaggaacaagaccagattttgcaga 342  Q
      ||||| ||||||  |||||| ||| ||| ||||||||||||||    ||||||||||||||||| ||| || ||||| | ||||||||| || |||||    
2439 ggattgggagtgcatattcttcagcagcttgtatggtaaatgacatgtaacaatcagaaactaagctagttactggagggataagaccagaattggcaga 2340  T
343 ttcatcaagtctagctagaagttcgcgaaa 372  Q
     || ||||||||||| ||||||||||||||    
2339 ctcgtcaagtctagcaagaagttcgcgaaa 2310  T

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Target: scaffold0477 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 152 - 332
Target Start/End: Complemental strand, 3598 - 3418
Alignment:
152 ttacctttgagtgggatgagacctttctcaatcaatgtacgaaagtgtaaaacagacatgaaagaacaagcactaaatgggacaaggagaacaattggaa 251  Q
    |||||||||||||| || || ||||| | || || ||||| |||||||||| |||||| ||||||||| |||||    | |  || |||||||||||| |    
3598 ttacctttgagtggtattagtcctttttgaaacagtgtacaaaagtgtaaagcagacaagaaagaacatgcactgccggtggaaaagagaacaattggga 3499  T
252 gtgcaagttcttcggcaacttttatggtaaatgacaatagacaatcagaaactaagcaagtaacaggaggaacaagaccag 332  Q
    ||||| ||||||| ||| ||| ||||||||||| ||    ||||||||  |||| |||||||||  | |||||||||||||    
3498 gtgcatgttcttcagcagcttgtatggtaaatggcatgtaacaatcagcgactatgcaagtaacttgtggaacaagaccag 3418  T

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Target: scaffold0475 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 292 - 372
Target Start/End: Original strand, 2013 - 2093
Alignment:
292 acaatcagaaactaagcaagtaacaggaggaacaagaccagattttgcagattcatcaagtctagctagaagttcgcgaaa 372  Q
    ||||||||||||||||| ||| || ||||| | ||||||||| || ||||| || ||||||||||| ||||||||||||||    
2013 acaatcagaaactaagctagttactggagggataagaccagaattggcagactcgtcaagtctagcaagaagttcgcgaaa 2093  T

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