View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13369_low_9 (Length: 443)
Name: NF13369_low_9
Description: NF13369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13369_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 20 - 426
Target Start/End: Complemental strand, 3215712 - 3215306
Alignment:
| Q |
20 |
gaagttagtggaatactttgtaactttaataagatttgtataattgaaaaactacataagtcactctattctcgtttcagagatgtagacataattgact |
119 |
Q |
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| T |
3215712 |
gaagttagtggaatactttgtaactttaataagatttgtataattgaaaaattacataagtcactctattctcgtttcagagatgtagacataattgact |
3215613 |
T |
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| Q |
120 |
gaatttcgtgatcagttgtttgtatttttgtgtgcgattatttatcttatctctttagaactggatttgtggttgtaacaattgttcttgttttggtcac |
219 |
Q |
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| T |
3215612 |
gaatttcgtgatcagttgtttatgtttctatgtgcgattatttatcttatctctttagaactggatttgtggttgtaacaattgttcttgttttggtcac |
3215513 |
T |
|
| Q |
220 |
agggtcttactaggaatgctaattgctttgccagtggcattgatttactacctcctcttatcaatttgacacactacgttgaatacatacaaggaacaat |
319 |
Q |
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| T |
3215512 |
agggtcttactaggaatgctaattgctttgccagtggcattgatttactacctcctcttatccatttgacacactacgttgaatacatacaaggaacaat |
3215413 |
T |
|
| Q |
320 |
tttgattcctagtttgaaaatctataacaaattttacaagtagattacacagattttgtaactggttgattcaacagaaataataacacttgtgagtata |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3215412 |
tttgattcctagtttgaaaatctataacaaattttacaagtagattacacagattttgtaactggttgattcaacagaaataataacacttgtgagtata |
3215313 |
T |
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| Q |
420 |
tcaatat |
426 |
Q |
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| T |
3215312 |
tcaatat |
3215306 |
T |
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