View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1336_high_1 (Length: 833)

Name: NF1336_high_1
Description: NF1336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1336_high_1
NF1336_high_1
[»] chr1 (8 HSPs)
chr1 (97-823)||(37939279-37940005)
chr1 (337-771)||(37939966-37940403)
chr1 (337-824)||(37939921-37940411)
chr1 (337-815)||(37939786-37940267)
chr1 (335-635)||(37940099-37940402)
chr1 (337-823)||(37939699-37940185)
chr1 (337-781)||(37940011-37940458)
chr1 (335-424)||(37940369-37940458)


Alignment Details
Target: chr1 (Bit Score: 663; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 663; E-Value: 0
Query Start/End: Original strand, 97 - 823
Target Start/End: Original strand, 37939279 - 37940005
Alignment:
Q  97 tcactttggttttcatccacttcagtaaccacaggctctactttctctgtttcagctggccctgcttcgtcgttcttagtctctttcagtatcgctgcct 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37939279 tcactttggttttcatccacttcagtaaccacaggctctactttctctgtttcagctggccctgcttcgtcgttcttagtctctttcagtatcgctgcct 37939378  T
Q  197 caaattctaattctcttgacttttcttctacagcaatgaaatcattggtttctgtagactgttctggaattgaagatgcgtttggttgctcctcttccct 296  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37939379 caaattctaattctcttgacttttcttctacagcaatgacatcattggtttctgtagactgttctggaattgaagatgcgtttggttgctcctcttccct 37939478  T
Q  297 tcgttccgttgaatgttgttctggttctttctgattttcctcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagcc 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37939479 tcgttccgttgaatgttgttctggttctttctgattttcctcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagcc 37939578  T
Q  397 acgggttcttcttttaccgtttctgtagcttgaacttcagtagccacaggttcttcttttgccgtttctgtaggatcaacttcagtaaccacaggtttga 496  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||    
T  37939579 acaggttcttcttttaccgtttctgtagcttgaacttcagtagccacaggttcttcttttaccatttctctaggatcaacttcagtaaccacaggtttga 37939678  T
Q  497 cttttactgattctgtcagatcaacttcagtaaccacgggttcttttactgtttctgtagcttcaacttctgtagccacagcttcttcttttactgtctc 596  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||    
T  37939679 cttttactgattctgtcagatcaacttcagtaaccaggggttcttttactgtttttgtaatttcaacttctgtagccacagcttcttcttttactgtctc 37939778  T
Q  597 tgtaggatcaacttcagtaactataggttcgtcttttaccgtttctgttgcctcgaattcagtagctgcaggttcatcttttaccgtttctgtaggctca 696  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  37939779 tgtaggatcaacttcagtaactataggttcgtcttttaccgtttctgttgcctcgaattcagtagctgcaggttcatcttttaccatttctgtaggctca 37939878  T
Q  697 actacagttgtcacaggttcttcttttacggtttctgtagcttcaacttcggtagccacaaattcttcttttactgtttctgtagcttcaacttctgtag 796  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  37939879 actacagttgtcacaggttcttcttttacggtttctgtagcttcaacttcagtagccacagattcttcttttactgtttctgtagcttcaacttcagtag 37939978  T
Q  797 ccacagcttcttcttttactgtctctg 823  Q
    |||| | ||||||||||||||| ||||    
T  37939979 ccactggttcttcttttactgtttctg 37940005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 337 - 771
Target Start/End: Original strand, 37939966 - 37940403
Alignment:
Q  337 tcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttcag 436  Q
    |||||||||||| |||| |||||  ||||||||||||||||||  ||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||    
T  37939966 tcaacttcagtagccactggttcttcttttactgtttctgtagcttcaacttcagtagccactggttcttcttttactgtttctgtagcttcaacttcag 37940065  T
Q  437 tagccacaggttcttcttttgccgtttctgtaggatcaacttcagtaaccacaggtttgacttttactgattctgtcagatcaacttcagtaaccacggg 536  Q
    ||||  ||||||| |||||| ||||||||||||  |||||||||||  |||||||||   ||||||| | ||||||  | |||||||||||| |||||||    
T  37940066 tagctgcaggttcgtcttttaccgtttctgtagcctcaacttcagttgccacaggttcttcttttaccgtttctgtaggctcaacttcagtagccacggg 37940165  T
Q  537 ttct---tttactgtttctgtagcttcaacttctgtagccacagcttcttcttttactgtctctgtaggatcaacttcagtaactataggttcgtctttt 633  Q
    ||||   ||||||||||||||||||||| |||| ||||| | || |||||||||||| || ||||||||||||||||||||||| | |||||||||||||    
T  37940166 ttcttcttttactgtttctgtagcttcagcttcagtagctagaggttcttcttttaccgtttctgtaggatcaacttcagtaaccacaggttcgtctttt 37940265  T
Q  634 accgtttctgttgcctcgaattcagtagctgcaggttcatcttttaccgtttctgtaggctcaactacagttgtcacaggttcttcttttacggtttctg 733  Q
    || ||||||||  |||  | |||||||||||||||||| |||||||| ||||| |||| ||||||| |||| | |||| ||||||||||||  |||||||    
T  37940266 acggtttctgtaaccttaacttcagtagctgcaggttcttcttttactgtttccgtagcctcaacttcagtagccacaagttcttcttttagtgtttctg 37940365  T
Q  734 tagcttcaacttcggtagccacaaattcttcttttact 771  Q
    |||| |||||||| ||| ||||   |||||||||||||    
T  37940366 tagcctcaacttcagtaaccacgggttcttcttttact 37940403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 337 - 824
Target Start/End: Original strand, 37939921 - 37940411
Alignment:
Q  337 tcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttcag 436  Q
    |||||||||||| |||||| |||  ||||||||||||||||||  ||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||    
T  37939921 tcaacttcagtagccacagattcttcttttactgtttctgtagcttcaacttcagtagccactggttcttcttttactgtttctgtagcttcaacttcag 37940020  T
Q  437 tagccacaggttcttcttttgccgtttctgtaggatcaacttcagtaaccacaggtttgacttttactgattctgtcagatcaacttcagtaaccacggg 536  Q
    ||||||| |||||||||||| | ||||||||||  |||||||||||| |  |||||| | ||||||| | ||||||    |||||||||||  |||| ||    
T  37940021 tagccactggttcttcttttactgtttctgtagcttcaacttcagtagctgcaggttcgtcttttaccgtttctgtagcctcaacttcagttgccacagg 37940120  T
Q  537 ttctt---ttactgtttctgtagcttcaacttctgtagccacagcttcttcttttactgtctctgtaggatcaacttcagtaactataggttcgtctttt 633  Q
    |||||   |||| ||||||||||  |||||||| |||||||| | ||||||||||||||| |||||||  ||| |||||||| ||| |||||| ||||||    
T  37940121 ttcttcttttaccgtttctgtaggctcaacttcagtagccacgggttcttcttttactgtttctgtagcttcagcttcagtagctagaggttcttctttt 37940220  T
Q  634 accgtttctgttgcctcgaattcagtagctgcaggttcatcttttaccgtttctgtaggctcaactacagttgtcacaggttcttcttttacggtttctg 733  Q
    ||||||||||| |  || | ||||||| |  ||||||| |||||||| |||||||||  || |||| |||| |   |||||||||||||||| ||||| |    
T  37940221 accgtttctgtaggatcaacttcagtaaccacaggttcgtcttttacggtttctgtaaccttaacttcagtagctgcaggttcttcttttactgtttccg 37940320  T
Q  734 tagcttcaacttcggtagccacaaattcttcttttactgtttctgtagcttcaacttctgtagccacagcttcttcttttactgtctctgc 824  Q
    |||| |||||||| |||||||||| ||||||||||| |||||||||||| |||||||| ||| |||| | ||||||||||||| |||||||    
T  37940321 tagcctcaacttcagtagccacaagttcttcttttagtgtttctgtagcctcaacttcagtaaccacgggttcttcttttactatctctgc 37940411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 337 - 815
Target Start/End: Original strand, 37939786 - 37940267
Alignment:
Q  337 tcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttcag 436  Q
    |||||||||||||| | ||||||  ||||||| |||||||| | ||| | |||||||||  | ||||| ||||||||| |||||||||  | |||| |||    
T  37939786 tcaacttcagtaactataggttcgtcttttaccgtttctgttgcctcgaattcagtagctgcaggttcatcttttaccatttctgtaggctcaactacag 37939885  T
Q  437 tagccacaggttcttcttttgccgtttctgtaggatcaacttcagtaaccacaggtttgacttttactgattctgtcagatcaacttcagtaaccacggg 536  Q
    | | |||||||||||||||| | ||||||||||  |||||||||||| |||||| ||   ||||||||| ||||||    |||||||||||| |||| ||    
T  37939886 ttgtcacaggttcttcttttacggtttctgtagcttcaacttcagtagccacagattcttcttttactgtttctgtagcttcaacttcagtagccactgg 37939985  T
Q  537 ttct---tttactgtttctgtagcttcaacttctgtagccacagcttcttcttttactgtctctgtaggatcaacttcagtaactataggttcgtctttt 633  Q
    ||||   |||||||||||||||||||||||||| |||||||| | ||||||||||||||| |||||||  |||||||||||| ||  |||||||||||||    
T  37939986 ttcttcttttactgtttctgtagcttcaacttcagtagccactggttcttcttttactgtttctgtagcttcaacttcagtagctgcaggttcgtctttt 37940085  T
Q  634 accgtttctgttgcctcgaattcagtagctgcaggttcatcttttaccgtttctgtaggctcaactacagttgtcacaggttcttcttttacggtttctg 733  Q
    ||||||||||| ||||| | |||||| ||  ||||||| ||||||||||||||||||||||||||| |||| | ||| |||||||||||||| |||||||    
T  37940086 accgtttctgtagcctcaacttcagttgccacaggttcttcttttaccgtttctgtaggctcaacttcagtagccacgggttcttcttttactgtttctg 37940185  T
Q  734 tagcttcaacttcggtagccacaaattcttcttttactgtttctgtagcttcaacttctgtagccacagcttcttcttttac 815  Q
    |||||||| |||| ||||| | |  |||||||||||| ||||||||||  |||||||| ||| |||||| ||| ||||||||    
T  37940186 tagcttcagcttcagtagctagaggttcttcttttaccgtttctgtaggatcaacttcagtaaccacaggttcgtcttttac 37940267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 335 - 635
Target Start/End: Original strand, 37940099 - 37940402
Alignment:
Q  335 cctcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttc 434  Q
    |||||||||||||  ||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||    
T  37940099 cctcaacttcagttgccacaggttcttcttttaccgtttctgtaggctcaacttcagtagccacgggttcttcttttactgtttctgtagcttcagcttc 37940198  T
Q  435 agtagccacaggttcttcttttgccgtttctgtaggatcaacttcagtaaccacaggtttgacttttactgattctgtcagatcaacttcagtaaccacg 534  Q
    |||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||| | |||||| |  | |||||||||| |  |     
T  37940199 agtagctagaggttcttcttttaccgtttctgtaggatcaacttcagtaaccacaggttcgtcttttacggtttctgtaaccttaacttcagtagctgca 37940298  T
Q  535 gg---ttcttttactgtttctgtagcttcaacttctgtagccacagcttcttcttttactgtctctgtaggatcaacttcagtaactataggttcgtctt 631  Q
    ||   ||||||||||||||| ||||| |||||||| |||||||||  ||||||||||| ||| |||||||  |||||||||||||| |  ||||| ||||    
T  37940299 ggttcttcttttactgtttccgtagcctcaacttcagtagccacaagttcttcttttagtgtttctgtagcctcaacttcagtaaccacgggttcttctt 37940398  T
Q  632 ttac 635  Q
    ||||    
T  37940399 ttac 37940402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 337 - 823
Target Start/End: Original strand, 37939699 - 37940185
Alignment:
Q  337 tcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttcag 436  Q
    ||||||||||||||||  |||||   ||||||||||| ||||   |||||||| |||||||| | |||||||||||| || |||||||  | ||||||||    
T  37939699 tcaacttcagtaaccaggggttc---ttttactgtttttgtaatttcaacttctgtagccacagcttcttcttttactgtctctgtaggatcaacttcag 37939795  T
Q  437 tagccacaggttcttcttttgccgtttctgtaggatcaacttcagtaaccacaggtttgacttttactgattctgtcagatcaacttcagtaaccacggg 536  Q
    || | | |||||| |||||| |||||||||| |  || | ||||||| |  ||||||   |||||||   ||||||  | |||||| ||||   ||| ||    
T  37939796 taactataggttcgtcttttaccgtttctgttgcctcgaattcagtagctgcaggttcatcttttaccatttctgtaggctcaactacagttgtcacagg 37939895  T
Q  537 ttctt---ttactgtttctgtagcttcaacttctgtagccacagcttcttcttttactgtctctgtaggatcaacttcagtaactataggttcgtctttt 633  Q
    |||||   |||| |||||||||||||||||||| |||||||||| ||||||||||||||| |||||||  |||||||||||| | |  ||||| ||||||    
T  37939896 ttcttcttttacggtttctgtagcttcaacttcagtagccacagattcttcttttactgtttctgtagcttcaacttcagtagccactggttcttctttt 37939995  T
Q  634 accgtttctgttgcctcgaattcagtagctgcaggttcatcttttaccgtttctgtaggctcaactacagttgtcacaggttcttcttttacggtttctg 733  Q
    || |||||||| || || | |||||||||  | ||||| |||||||| ||||||||||  |||||| |||| |   ||||||| |||||||| |||||||    
T  37939996 actgtttctgtagcttcaacttcagtagccactggttcttcttttactgtttctgtagcttcaacttcagtagctgcaggttcgtcttttaccgtttctg 37940095  T
Q  734 tagcttcaacttcggtagccacaaattcttcttttactgtttctgtagcttcaacttctgtagccacagcttcttcttttactgtctctg 823  Q
    |||| |||||||| || ||||||  |||||||||||| ||||||||||  |||||||| |||||||| | ||||||||||||||| ||||    
T  37940096 tagcctcaacttcagttgccacaggttcttcttttaccgtttctgtaggctcaacttcagtagccacgggttcttcttttactgtttctg 37940185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 337 - 781
Target Start/End: Original strand, 37940011 - 37940458
Alignment:
Q  337 tcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttcag 436  Q
    |||||||||||| |||| |||||  ||||||||||||||||||  ||||||||||||||  | ||||| |||||||||||||||||||| | ||||||||    
T  37940011 tcaacttcagtagccactggttcttcttttactgtttctgtagcttcaacttcagtagctgcaggttcgtcttttaccgtttctgtagcctcaacttcag 37940110  T
Q  437 tagccacaggttcttcttttgccgtttctgtaggatcaacttcagtaaccacaggtttgacttttactgattctgtcagatcaacttcagtaaccacggg 536  Q
    | |||||||||||||||||| ||||||||||||| |||||||||||| |||| ||||   ||||||||| ||||||    ||| |||||||| | |  ||    
T  37940111 ttgccacaggttcttcttttaccgtttctgtaggctcaacttcagtagccacgggttcttcttttactgtttctgtagcttcagcttcagtagctagagg 37940210  T
Q  537 ttctt---ttactgtttctgtagcttcaacttctgtagccacagcttcttcttttactgtctctgtaggatcaacttcagtaactataggttcgtctttt 633  Q
    |||||   |||| ||||||||||  |||||||| ||| |||||| ||| |||||||| || ||||||   | |||||||||| ||  |||||| ||||||    
T  37940211 ttcttcttttaccgtttctgtaggatcaacttcagtaaccacaggttcgtcttttacggtttctgtaaccttaacttcagtagctgcaggttcttctttt 37940310  T
Q  634 accgtttctgttgcctcgaattcagtagctgcaggttcatcttttaccgtttctgtaggctcaactacagttgtcacaggttcttcttttacggtttctg 733  Q
    || ||||| || ||||| | |||||||||  || |||| |||||||  |||||||||| ||||||| ||||   ||| ||||||||||||||  | ||||    
T  37940311 actgtttccgtagcctcaacttcagtagccacaagttcttcttttagtgtttctgtagcctcaacttcagtaaccacgggttcttcttttactatctctg 37940410  T
Q  734 tagcttcaacttcggtagccacaaattcttcttttactgtttctgtag 781  Q
     ||   ||||||||||| |||    ||||||||| |||||||||||||    
T  37940411 cagtcgcaacttcggtaaccatgggttcttctttcactgtttctgtag 37940458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 335 - 424
Target Start/End: Original strand, 37940369 - 37940458
Alignment:
Q  335 cctcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtag 424  Q
    ||||||||||||||||||| |||||  |||||||| | |||| || | ||||||| ||| ||| |||||||||||| || ||||||||||    
T  37940369 cctcaacttcagtaaccacgggttcttcttttactatctctgcagtcgcaacttcggtaaccatgggttcttctttcactgtttctgtag 37940458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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