View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1336_high_3 (Length: 582)
Name: NF1336_high_3
Description: NF1336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1336_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 228 - 575
Target Start/End: Original strand, 36939742 - 36940101
Alignment:
| Q |
228 |
tatcattcaactatagaaatgatttaattatcaaactatttctgactgtacatgggaccatgtgtttgcatatcactcaactatagaaaattatttaatt |
327 |
Q |
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| T |
36939742 |
tatcattcaactatagaaattatttaattatcaaactatttatgactgtacatgggaccatgtgtttgcatatcactcaactatagaaaattatttaatt |
36939841 |
T |
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| Q |
328 |
tgtatcaagctatttctaattgttca--------------tgggaccatgtgtttggtttggttggtgcgaaacacaaactatagaaaagataggataag |
413 |
Q |
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| T |
36939842 |
tgtatcaagctatttcttattgttcatgagcccatgtgcttgggaccatgtgtttggtttggttggtgcgaaacacaaactatagaaaagataggataag |
36939941 |
T |
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| Q |
414 |
actttttcaaaccttgnnnnnnnnaatgaagtttcaaatgtaggtgatgtgaacttttcaatagcttggactgataaagatagtatttatctgacttcaa |
513 |
Q |
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| T |
36939942 |
actttttcaaaccttg-tttttttaatgaagtttcaaatgaaggtgatgtgaacttttcaatagcttggactgataaagatagtatttatctgacttcaa |
36940040 |
T |
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| Q |
514 |
tgnnnnnnnncactagacattttattcctcccaatctttgtgtgaccaatgcatattgttgg |
575 |
Q |
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| T |
36940041 |
tgttttttttcacta-acattttattcctcccaatctttgtgtgaccaatgcattttgttgg |
36940101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 42 - 222
Target Start/End: Original strand, 36993639 - 36993819
Alignment:
| Q |
42 |
gaatatgattttttgattttatcataggtgttggagttgggaattattgttcactccgttataataggaatttctctgggcgcttcagagagtcctaaaa |
141 |
Q |
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| T |
36993639 |
gaatatgattttttgattttatcataggtgttggagttgggaattattgttcactctgttatcataggaatttctttaggtgcttcagagagtcctaaaa |
36993738 |
T |
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| Q |
142 |
ccataaagccattagtagctgcattgactttccatcagttctttgaaggcatgggacttggaagttgtataacacaggtat |
222 |
Q |
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| T |
36993739 |
ccataagaccattagtggctgcgttgacttttcatcagttctttgaaggcatgggacttggaagttgtataactcaggtat |
36993819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 42 - 222
Target Start/End: Original strand, 37019079 - 37019259
Alignment:
| Q |
42 |
gaatatgattttttgattttatcataggtgttggagttgggaattattgttcactccgttataataggaatttctctgggcgcttcagagagtcctaaaa |
141 |
Q |
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| T |
37019079 |
gaatatgattttttgattttatcataggtgttggagttgggaattattgttcactctgttatcataggaatttctttaggtgcttcagagagtcctaaaa |
37019178 |
T |
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| Q |
142 |
ccataaagccattagtagctgcattgactttccatcagttctttgaaggcatgggacttggaagttgtataacacaggtat |
222 |
Q |
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| T |
37019179 |
ccataagaccattagtggctgcgttgacttttcatcagttctttgaaggcatgggacttggaagttgtataactcaggtat |
37019259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 52 - 225
Target Start/End: Original strand, 36939484 - 36939657
Alignment:
| Q |
52 |
ttttgattttatcataggtgttggagttgggaattattgttcactccgttataataggaatttctctgggcgcttcagagagtcctaaaaccataaagcc |
151 |
Q |
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| T |
36939484 |
ttttgatttcataataggtattggagttgggaattattgttcactccgttataataggaatttctctgggtgcttcagagagtcctaagactataaggcc |
36939583 |
T |
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| Q |
152 |
attagtagctgcattgactttccatcagttctttgaaggcatgggacttggaagttgtataacacaggtattta |
225 |
Q |
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| T |
36939584 |
attggtcgctgcattgacttttcatcagttctttgaaggcatgggacttggaagttgtataacacaggtattta |
36939657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 29 - 221
Target Start/End: Original strand, 36956040 - 36956230
Alignment:
| Q |
29 |
attgattgtgatagaatatgattttttgattttatcataggtgttggagttgggaattattgttcactccgttataataggaatttctctgggcgcttca |
128 |
Q |
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| T |
36956040 |
attgattgtgattgaatat--tgttttgatttcattataggtgttggagttggggattattgttcactctgttataataggaatttctctgggtgcttca |
36956137 |
T |
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| Q |
129 |
gagagtcctaaaaccataaagccattagtagctgcattgactttccatcagttctttgaaggcatgggacttggaagttgtataacacaggta |
221 |
Q |
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| T |
36956138 |
gagagtcctaaaaccataaggccgcttgtagctgcgttgacctttcatcaattttttgagggcatgggacttggaagttgtataactcaggta |
36956230 |
T |
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