View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1336_high_5 (Length: 418)
Name: NF1336_high_5
Description: NF1336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1336_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 74 - 403
Target Start/End: Complemental strand, 11085901 - 11085569
Alignment:
| Q |
74 |
tcacgcttcttgaggatttcccggcgtgcatgttatgttgtatacaagaacaaacgtacaacaaaagaaataaaataactattagtatgttattagtgtt |
173 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11085901 |
tcacgcttcttgaggatttcccggcgtgcatgttatgttgtatacaagaacaaacgtacaacaaaagaaataaaataactattagtatgttattagtgtt |
11085802 |
T |
|
| Q |
174 |
taattaatgtgtcttttataggcaagtggggatttgaccctttattattctattaatttatagtcattttct---gatggtgacatgcaagatcacatag |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
11085801 |
taattaatgtgtcttttataggcaagtggggatttgaccctttattattctattaatttatagtcattttctgatgatggtgacatgcaagatcacatag |
11085702 |
T |
|
| Q |
271 |
ccttaagtcatgtgtatgttaattaagctggtagaagtttgactatacttgtatctaaatgcataaatataatataacaacatagagtttaatggatgct |
370 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11085701 |
cctcaagtcatgtgtatgttaattaagctggtagaagtttgactatacttgtatctaaatgcataaatataatataacaacatagagtttaatggatgct |
11085602 |
T |
|
| Q |
371 |
annnnnnncagagttccctccacttgatgtaat |
403 |
Q |
| |
|
| ||||||||||||||||||||||||| |
|
|
| T |
11085601 |
atttttttcagagttccctccacttgatgtaat |
11085569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University