View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1336_high_7 (Length: 311)
Name: NF1336_high_7
Description: NF1336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1336_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 69 - 282
Target Start/End: Complemental strand, 36939318 - 36939104
Alignment:
| Q |
69 |
tacaagaattttacacatacatcaaaacatatatataaacataaatgtctatatgaagagataaatgtaagtaattataaataa---ctaagtttgtatt |
165 |
Q |
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| T |
36939318 |
tacaagaattttacacatacatcaaaacatatatc--aacataaatgtctatatgaagagataaatgtcagtaattataaataataactaagtttgtatt |
36939221 |
T |
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| Q |
166 |
attattatacctgtgttatgaccctatggcgaagaagttctgttgacggacccgaagaaacagaagacatatggggatgtgcatgaccatgtgaagcatg |
265 |
Q |
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| T |
36939220 |
attattatacctgtgttatgaccctatggcgaagaagttctgttgacggacccgaagaaacagaagacatgtggggatgtgcatgaccatgtgaagcatg |
36939121 |
T |
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| Q |
266 |
agtatgaacatccatgt |
282 |
Q |
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| T |
36939120 |
agtatgaacatccatgt |
36939104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 36939527 - 36939460
Alignment:
| Q |
1 |
gtgaacaataattcccaactccaatacctattatgaaatcaaaataatttatcagaatcgagtcaaac |
68 |
Q |
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| T |
36939527 |
gtgaacaataattcccaactccaatacctattatgaaatcaaaataatttatcagaatcgagtcaaac |
36939460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 36956104 - 36956061
Alignment:
| Q |
1 |
gtgaacaataattcccaactccaatacctattatgaaatcaaaa |
44 |
Q |
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| T |
36956104 |
gtgaacaataatccccaactccaacacctataatgaaatcaaaa |
36956061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 36993692 - 36993649
Alignment:
| Q |
1 |
gtgaacaataattcccaactccaatacctattatgaaatcaaaa |
44 |
Q |
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| T |
36993692 |
gtgaacaataattcccaactccaacacctatgataaaatcaaaa |
36993649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 37019132 - 37019089
Alignment:
| Q |
1 |
gtgaacaataattcccaactccaatacctattatgaaatcaaaa |
44 |
Q |
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|||||||||||||||||||||||| |||||| || ||||||||| |
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| T |
37019132 |
gtgaacaataattcccaactccaacacctatgataaaatcaaaa |
37019089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 212
Target Start/End: Complemental strand, 36993600 - 36993552
Alignment:
| Q |
165 |
tattattat-acctgtgttatgaccctatggcgaagaagttctgttgac |
212 |
Q |
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| T |
36993600 |
tattattattacctgtgatatgaccctatgacgaagaagttctgatgac |
36993552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 212
Target Start/End: Complemental strand, 37019040 - 37018992
Alignment:
| Q |
165 |
tattattat-acctgtgttatgaccctatggcgaagaagttctgttgac |
212 |
Q |
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||||||||| ||||||| |||||||||||| ||||||||||||| |||| |
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| T |
37019040 |
tattattattacctgtgatatgaccctatgacgaagaagttctgatgac |
37018992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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