View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1336_low_11 (Length: 370)

Name: NF1336_low_11
Description: NF1336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1336_low_11
NF1336_low_11
[»] scaffold0316 (2 HSPs)
scaffold0316 (20-213)||(6653-6847)
scaffold0316 (288-360)||(6506-6578)
[»] chr6 (2 HSPs)
chr6 (20-213)||(11974107-11974299)
chr6 (288-360)||(11974374-11974445)
[»] scaffold0003 (4 HSPs)
scaffold0003 (23-163)||(191524-191656)
scaffold0003 (288-354)||(191374-191440)
scaffold0003 (21-163)||(181694-181838)
scaffold0003 (21-163)||(188634-188778)
[»] chr3 (4 HSPs)
chr3 (23-163)||(11818504-11818636)
chr3 (20-169)||(41758367-41758515)
chr3 (288-354)||(11818354-11818420)
chr3 (21-106)||(11374545-11374630)
[»] chr8 (2 HSPs)
chr8 (20-169)||(33856385-33856533)
chr8 (20-137)||(14106634-14106751)
[»] chr4 (3 HSPs)
chr4 (20-169)||(31926536-31926684)
chr4 (21-84)||(37525368-37525431)
chr4 (20-90)||(14289268-14289338)
[»] chr5 (4 HSPs)
chr5 (21-84)||(2255887-2255950)
chr5 (21-163)||(3698162-3698306)
chr5 (21-163)||(3695800-3695944)
chr5 (21-163)||(3870844-3870988)
[»] chr1 (2 HSPs)
chr1 (21-84)||(28968299-28968362)
chr1 (20-169)||(16046707-16046857)
[»] scaffold0012 (1 HSPs)
scaffold0012 (21-84)||(55284-55347)
[»] scaffold0356 (1 HSPs)
scaffold0356 (20-137)||(4058-4175)
[»] scaffold0796 (1 HSPs)
scaffold0796 (21-163)||(8-152)
[»] scaffold1940 (1 HSPs)
scaffold1940 (115-163)||(471-519)
[»] scaffold0281 (1 HSPs)
scaffold0281 (115-163)||(22365-22413)


Alignment Details
Target: scaffold0316 (Bit Score: 151; Significance: 8e-80; HSPs: 2)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 6847 - 6653
Alignment:
Q  20 gtgattgcttcatacatgttggctataaatattgtgtttcaggctcacactttttacaccattttaagttacaacttacaattttcatatcactactata 119  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||  ||||    
T  6847 gtgattgcttcatacatgttggctataaatattgtgtttgaggctcacactttttacaccattttaagttacaactcacaattttcatttcactgttata 6748  T
Q  120 cattgtgc-tttttggtttcaacattctcactcaatttcgagattaatgcttttttgtttcaacattctaactcaatttcgagattcatactaaa 213  Q
    |||||| | |||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6747 cattgtacttttttgttttcaacattctcactcaatttcgagattcatgctttttggtttcaacattctaactcaatttcgagattcatactaaa 6653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 288 - 360
Target Start/End: Complemental strand, 6578 - 6506
Alignment:
Q  288 gatctaagtcttaagaccggatcaatttctaatattttttcataggtacaacaattaaacaaacttctctctg 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6578 gatctaagtcttaagaccggatcaatttctaatattttttcataggtacaacaattaaacaaacttttctctg 6506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 20 - 213
Target Start/End: Original strand, 11974107 - 11974299
Alignment:
Q  20 gtgattgcttcatacatgttggctataaatattgtgtttcaggctcacactttttacaccattttaagttacaacttacaattttcatatcactactata 119  Q
    |||||||||||||||||||| ||||||| |||||   || |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  11974107 gtgattgcttcatacatgtttgctataa-tattggtattgaggctcacactttttacaccattttaagttacaactcacaattttcatatcactgctata 11974205  T
Q  120 cattgtgctttttggtttcaacattctcactcaatttcgagattaatgcttttttgtttcaacattctaactcaatttcgagattcatactaaa 213  Q
    ||||||||||||||||||||||||||||| ||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11974206 cattgtgctttttggtttcaacattctcattcattttcgagattcatgctttttggtttcaacattctaactcaatttcgagattcatactaaa 11974299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 288 - 360
Target Start/End: Original strand, 11974374 - 11974445
Alignment:
Q  288 gatctaagtcttaagaccggatcaatttctaatattttttcataggtacaacaattaaacaaacttctctctg 360  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  11974374 gatctaagtcttaagaccggatcaatttctaata-tttttcataggtacaacaattaaacaaacttctctctg 11974445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 23 - 163
Target Start/End: Complemental strand, 191656 - 191524
Alignment:
Q  23 attgcttcatacatgttggctataaatattgtgtttcaggctcacactttttacaccattttaagttacaacttacaattttcatatcactactatacat 122  Q
    |||||||| |||||||| |||||||||||||||||| ||| |||||||||||||| |||||| |||||||||| | ||||||||||||||| |||||||     
T  191656 attgcttcgtacatgtttgctataaatattgtgtttgaggttcacactttttacatcatttttagttacaactcataattttcatatcactgctataca- 191558  T
Q  123 tgtgctttttggtttcaacattctcactcaatttcgagatt 163  Q
           ||||||||||| ||||||||||||||||||||||    
T  191557 -------tttggtttcaaaattctcactcaatttcgagatt 191524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 288 - 354
Target Start/End: Complemental strand, 191440 - 191374
Alignment:
Q  288 gatctaagtcttaagaccggatcaatttctaatattttttcataggtacaacaattaaacaaacttc 354  Q
    ||||||| |||||| |||||||||||| ||||| ||||||||| |||||||||||||||||||||||    
T  191440 gatctaattcttaataccggatcaattcctaatgttttttcattggtacaacaattaaacaaacttc 191374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 21 - 163
Target Start/End: Complemental strand, 181838 - 181694
Alignment:
Q  21 tgattgcttcatacatgttggctataaatattgtgtttcaggctcacactttttacaccattttaagttacaacttacaattttca--tatcactactat 118  Q
    ||||||||| |||||||||| ||||||||||||||||| || | |||| |||| ||| | |||| |||||||||| |||| |||||  | |   | ||||    
T  181838 tgattgcttaatacatgttgactataaatattgtgtttgagacccacaattttcacaacgttttgagttacaactcacaaatttcacttctttttgctat 181739  T
Q  119 acattgtgctttttggtttcaacattctcactcaatttcgagatt 163  Q
    | ||| || ||||| ||||||||||| |||| |||||||||||||    
T  181738 aaattttgttttttagtttcaacattttcacacaatttcgagatt 181694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 163
Target Start/End: Complemental strand, 188778 - 188634
Alignment:
Q  21 tgattgcttcatacatgttggctataaatattgtgtttcaggctcacactttttacaccattttaagttacaacttacaattttcatatc--actactat 118  Q
    ||||||||| |||||||||| ||||| ||||||||||| || | |||| |||| | | | |||| |||||||||| |||| ||||| |||    | ||||    
T  188778 tgattgcttaatacatgttgactatagatattgtgtttgagacccacaattttcaaaacgttttgagttacaactcacaaatttcacatctttttgctat 188679  T
Q  119 acattgtgctttttggtttcaacattctcactcaatttcgagatt 163  Q
    | ||| || ||||| ||||||||||| |||| |||||||||||||    
T  188678 aaattttgttttttagtttcaacattttcacacaatttcgagatt 188634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 23 - 163
Target Start/End: Complemental strand, 11818636 - 11818504
Alignment:
Q  23 attgcttcatacatgttggctataaatattgtgtttcaggctcacactttttacaccattttaagttacaacttacaattttcatatcactactatacat 122  Q
    |||||||| |||||||| |||||||||||||||||| || |||||||||||||||||||||| |||||||||| | |||||| |||||||| ||||||      
T  11818636 attgcttcgtacatgtttgctataaatattgtgtttgagactcacactttttacaccattttcagttacaactcataatttttatatcactgctatac-- 11818539  T
Q  123 tgtgctttttggtttcaacattctcactcaatttcgagatt 163  Q
          |||||||||||| ||||||||||||||||||||||    
T  11818538 ------ttttggtttcaaaattctcactcaatttcgagatt 11818504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 20 - 169
Target Start/End: Original strand, 41758367 - 41758515
Alignment:
Q  20 gtgattgcttcatacatgttggctataaatattgtgtttcaggctcacactttttacaccattttaagttacaacttacaattttcatatcactactata 119  Q
    ||||||||||||||||| |||| |||||||||||||||| |||||||||||||| ||| |||||| ||||| |||| | |||||||| |||| |  ||||    
T  41758367 gtgattgcttcatacatattggttataaatattgtgtttgaggctcacacttttcacatcattttgagttataactcataattttcacatcattgttata 41758466  T
Q  120 cattgtgctttttggtttcaacattctcactcaatttcgagattaatgct 169  Q
      |||||||||||||||| || ||| ||||||||||| ||| || |||||    
T  41758467 agttgtgctttttggttttaa-attttcactcaattttgagcttgatgct 41758515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 288 - 354
Target Start/End: Complemental strand, 11818420 - 11818354
Alignment:
Q  288 gatctaagtcttaagaccggatcaatttctaatattttttcataggtacaacaattaaacaaacttc 354  Q
    ||||||| | |||| |||||||||||| ||||| ||||||||| |||||||||||||||||||||||    
T  11818420 gatctaatttttaataccggatcaattcctaatgttttttcattggtacaacaattaaacaaacttc 11818354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 106
Target Start/End: Complemental strand, 11374630 - 11374545
Alignment:
Q  21 tgattgcttcatacatgttggctataaatattgtgtttcaggctcacactttttacaccattttaagttacaacttacaattttca 106  Q
    |||||||||  ||||||||| ||||||||||||||||| || ||| || |||| |||   |||| |||||||||| |||| |||||    
T  11374630 tgattgcttggtacatgttgactataaatattgtgtttgagactcgcaattttcacaatgttttgagttacaactcacaaatttca 11374545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 20 - 169
Target Start/End: Original strand, 33856385 - 33856533
Alignment:
Q  20 gtgattgcttcatacatgttggctataaatattgtgtttcaggctcacactttttacaccattttaagttacaacttacaattttcatatcactactata 119  Q
    ||||||||||||||||| |||| |||||||||||||||| |||||||||||||| ||| |||||| ||||| |||| | |||||||| |||| |  ||||    
T  33856385 gtgattgcttcatacatattggttataaatattgtgtttgaggctcacacttttcacatcattttgagttataactcataattttcacatcattgttata 33856484  T
Q  120 cattgtgctttttggtttcaacattctcactcaatttcgagattaatgct 169  Q
      |||||||||||||||| || ||| ||||||||||| ||| || |||||    
T  33856485 agttgtgctttttggttttaa-attttcactcaattttgagcttgatgct 33856533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 14106634 - 14106751
Alignment:
Q  20 gtgattgcttcatacatgttggctataaatattgtgtttcaggctcacactttttacaccattttaagttacaacttacaattttcatatcactactata 119  Q
    ||||||||||| ||||| |||| |||||||||||| ||| |||||||||||||| ||| |||||| ||||| |||| | |||||||| |||| |  ||||    
T  14106634 gtgattgcttcgtacatattggttataaatattgtatttgaggctcacacttttcacatcattttgagttataactcataattttcacatcattgttata 14106733  T
Q  120 cattgtgctttttggttt 137  Q
      ||||||||||| ||||    
T  14106734 agttgtgctttttcgttt 14106751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 20 - 169
Target Start/End: Complemental strand, 31926684 - 31926536
Alignment:
Q  20 gtgattgcttcatacatgttggctataaatattgtgtttcaggctcacactttttacaccattttaagttacaacttacaattttcatatcactactata 119  Q
    ||||||||||||||||| |||| |||||||||||||||| |||||||||||||| ||| |||||| ||||| |||| | |||||||| |||| |  ||||    
T  31926684 gtgattgcttcatacatattggttataaatattgtgtttgaggctcacacttttcacatcattttgagttataactcataattttcacatcattgttata 31926585  T
Q  120 cattgtgctttttggtttcaacattctcactcaatttcgagattaatgct 169  Q
      |||||||||||||||| || ||| ||||||||||| ||| || |||||    
T  31926584 agttgtgctttttggttttaa-attttcactcaattttgagcttgatgct 31926536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 37525368 - 37525431
Alignment:
Q  21 tgattgcttcatacatgttggctataaatattgtgtttcaggctcacactttttacaccatttt 84  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||    
T  37525368 tgattgcttcatacatattggctataaatattgtgtttgaggctcacacttttcacaccatttt 37525431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 14289268 - 14289338
Alignment:
Q  20 gtgattgcttcatacatgttggctataaatattgtgtttcaggctcacactttttacaccattttaagtta 90  Q
    |||||| |||||||||||||||||||||||||| ||||| ||||||||| |||| |||||| ||| |||||    
T  14289268 gtgattccttcatacatgttggctataaatattatgtttgaggctcacagttttcacaccactttgagtta 14289338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 2255887 - 2255950
Alignment:
Q  21 tgattgcttcatacatgttggctataaatattgtgtttcaggctcacactttttacaccatttt 84  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  2255887 tgattgcttcatacatgttggctataaatattgtgtttgaggctcacacttttcacaccatttt 2255950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 21 - 163
Target Start/End: Complemental strand, 3698306 - 3698162
Alignment:
Q  21 tgattgcttcatacatgttggctataaatattgtgtttcaggctcacactttttacaccattttaagttacaacttacaattttcatatc--actactat 118  Q
    ||||||||| |||||||||| ||||| ||||||||||| || | |||| |||| | | | |||| |||||||||| |||| ||||| |||    ||||||    
T  3698306 tgattgcttaatacatgttgactatagatattgtgtttgagacccacaattttcaaaacgttttgagttacaactcacaaatttcacatctttttactat 3698207  T
Q  119 acattgtgctttttggtttcaacattctcactcaatttcgagatt 163  Q
    | ||| || ||||| ||||||||||| |||| |||||||||||||    
T  3698206 aaattttgttttttagtttcaacattttcacacaatttcgagatt 3698162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 163
Target Start/End: Complemental strand, 3695944 - 3695800
Alignment:
Q  21 tgattgcttcatacatgttggctataaatattgtgtttcaggctcacactttttacaccattttaagttacaacttacaattttcatatc--actactat 118  Q
    ||||||||| |||||||||| ||||| ||||||||||| || | |||| |||| | | | |||| |||||||||| |||| ||||| |||    | ||||    
T  3695944 tgattgcttaatacatgttgactatagatattgtgtttgagacccacaattttcaaaacgttttgagttacaactcacaaatttcacatctttttgctat 3695845  T
Q  119 acattgtgctttttggtttcaacattctcactcaatttcgagatt 163  Q
    | ||| || ||||| ||||||||||| |||| |||||||||||||    
T  3695844 aaattttgttttttagtttcaacattttcacacaatttcgagatt 3695800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 163
Target Start/End: Original strand, 3870844 - 3870988
Alignment:
Q  21 tgattgcttcatacatgttggctataaatattgtgtttcaggctcacactttttacaccattttaagttacaacttacaattttcatatc--actactat 118  Q
    ||||||||| |||||||||| ||||| ||||||||||| || | |||| |||| | | | |||| |||||||||| |||| ||||| |||    | ||||    
T  3870844 tgattgcttaatacatgttgactatagatattgtgtttgagacccacaattttcaaaacgttttgagttacaactcacaaatttcacatctttttgctat 3870943  T
Q  119 acattgtgctttttggtttcaacattctcactcaatttcgagatt 163  Q
    | ||| || ||||| ||||||||||| |||| |||||||||||||    
T  3870944 aaattttgttttttagtttcaacattttcacacaatttcgagatt 3870988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 28968362 - 28968299
Alignment:
Q  21 tgattgcttcatacatgttggctataaatattgtgtttcaggctcacactttttacaccatttt 84  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  28968362 tgattgcttcatacatgttggctataaatattgtgtttgaggctcacacttttcacaccatttt 28968299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 169
Target Start/End: Complemental strand, 16046857 - 16046707
Alignment:
Q  20 gtgattgcttcatacatgttggctataaatattgtgtttcaggctcacactttttacaccattttaagt--tacaacttacaattttcatatcactacta 117  Q
    ||||||||||||||||| |||| |||||||||||||||| |||||||||||||| ||| |||||| |||  || |||| | |||||||| |||| |  ||    
T  16046857 gtgattgcttcatacatattggttataaatattgtgtttgaggctcacacttttcacatcattttgagttatataactcataattttcacatcattgtta 16046758  T
Q  118 tacattgtgctttttggtttcaacattctcactcaatttcgagattaatgct 169  Q
    ||  ||||||||||||||||||| |||  |||||||||| ||| || |||||    
T  16046757 taagttgtgctttttggtttcaa-atttacactcaattttgagcttgatgct 16046707  T

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Target: scaffold0012 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 55284 - 55347
Alignment:
Q  21 tgattgcttcatacatgttggctataaatattgtgtttcaggctcacactttttacaccatttt 84  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||    
T  55284 tgattgcttcatacatgatggctataaatattgtgtttgaggctcacacttttcacaccatttt 55347  T

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Target: scaffold0356 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 4058 - 4175
Alignment:
Q  20 gtgattgcttcatacatgttggctataaatattgtgtttcaggctcacactttttacaccattttaagttacaacttacaattttcatatcactactata 119  Q
    ||||||||||| ||||| |||| |||||||||||| ||| |||||||||||||| ||| |||||| ||||| |||| | |||||||| |||| |  ||||    
T  4058 gtgattgcttcgtacatattggttataaatattgtatttgaggctcacacttttcacatcattttgagttataactcataattttcacatcattgttata 4157  T
Q  120 cattgtgctttttggttt 137  Q
      ||||||||||| ||||    
T  4158 agttgtgctttttcgttt 4175  T

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Target: scaffold0796 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0796
Description:

Target: scaffold0796; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 21 - 163
Target Start/End: Original strand, 8 - 152
Alignment:
Q  21 tgattgcttcatacatgttggctataaatattgtgtttcaggctcacactttttacaccattttaagttacaacttacaattttca--tatcactactat 118  Q
    ||||||||| |||||||||| ||||||||||||||||| || | |||| |||| ||| | |||| |||||||||| |||| |||||  | |   | ||||    
T  8 tgattgcttgatacatgttgactataaatattgtgtttgagacccacaattttcacaacgttttgagttacaactcacaaatttcacttctttttgctat 107  T
Q  119 acattgtgctttttggtttcaacattctcactcaatttcgagatt 163  Q
    | ||| || ||||| ||||||||||| |||| |||||||||||||    
T  108 aaattttgttttttagtttcaacattttcacacaatttcgagatt 152  T

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Target: scaffold1940 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1940
Description:

Target: scaffold1940; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 519 - 471
Alignment:
Q  115 ctatacattgtgctttttggtttcaacattctcactcaatttcgagatt 163  Q
    ||||| |||||||||||  ||||||||||| |||| |||||||||||||    
T  519 ctataaattgtgcttttaagtttcaacattttcacacaatttcgagatt 471  T

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Target: scaffold0281 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 22365 - 22413
Alignment:
Q  115 ctatacattgtgctttttggtttcaacattctcactcaatttcgagatt 163  Q
    ||||| |||||||||||  ||||||||||| |||| |||||||||||||    
T  22365 ctataaattgtgcttttaagtttcaacattttcacacaatttcgagatt 22413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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