View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1336_low_13 (Length: 346)
Name: NF1336_low_13
Description: NF1336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1336_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 30 - 270
Target Start/End: Original strand, 38832120 - 38832360
Alignment:
| Q |
30 |
atatgtatatattctcatagttttattagtttaaacaaaagcaacttaaaaataaagtgaaaattaaaagaagtatagtttctactttttgcttgattta |
129 |
Q |
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| T |
38832120 |
atatgtatatattctcatagttttattagtttaaacaaaagcaatttaaaaataaagtgaaaattaaaagaagtatagtttctactttttgcttgattta |
38832219 |
T |
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| Q |
130 |
ttagaatctttaagcctcatgatgtgatttggaattttctgaaaatgtaatattattcaccgatataggaatatataggagagaaaataagagtaagtgt |
229 |
Q |
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| T |
38832220 |
ttagaatctttaagcctcatgatgtgatttggaatttcctgaaaatgtaatattattcaccgatataggaatatataggagagaaaataatagtaagtgt |
38832319 |
T |
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| Q |
230 |
attgtatttttgaagtataaataagaagagaaccaaccaaa |
270 |
Q |
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| T |
38832320 |
attgtatttttgaagtataaataagaagagaaccaaccaaa |
38832360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 268 - 344
Target Start/End: Complemental strand, 7634116 - 7634040
Alignment:
| Q |
268 |
aaataatctcttgtttttctttctaggtactatgttgcttgcacttgaactgatatgacaattacacctatgctact |
344 |
Q |
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| T |
7634116 |
aaataatctcttgtttttctttctaggtactatgttgcttgcacttgaactgatatgacaattacacctatactact |
7634040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 274 - 321
Target Start/End: Complemental strand, 26643808 - 26643761
Alignment:
| Q |
274 |
tctcttgtttttctttctaggtactatgttgcttgcacttgaactgat |
321 |
Q |
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| T |
26643808 |
tctcttgttttcctctctaggtactctgttgcttgcacttgaactgat |
26643761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 274 - 323
Target Start/End: Complemental strand, 26657441 - 26657392
Alignment:
| Q |
274 |
tctcttgtttttctttctaggtactatgttgcttgcacttgaactgatat |
323 |
Q |
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| T |
26657441 |
tctcttgttttcctatctaggtactctgttgcttgcacctgaactgatat |
26657392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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