View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1336_low_18 (Length: 307)

Name: NF1336_low_18
Description: NF1336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1336_low_18
NF1336_low_18
[»] chr3 (29 HSPs)
chr3 (11-307)||(40495696-40495992)
chr3 (191-254)||(43339173-43339235)
chr3 (191-254)||(50610255-50610317)
chr3 (191-260)||(22605678-22605746)
chr3 (191-254)||(2218807-2218869)
chr3 (191-254)||(16464735-16464797)
chr3 (191-254)||(18411032-18411094)
chr3 (191-254)||(18762749-18762811)
chr3 (191-254)||(27126994-27127056)
chr3 (191-254)||(27324855-27324917)
chr3 (191-254)||(30042660-30042722)
chr3 (191-254)||(31312800-31312862)
chr3 (191-254)||(44842367-44842429)
chr3 (191-253)||(40906954-40907015)
chr3 (191-253)||(47912130-47912191)
chr3 (191-264)||(11122418-11122490)
chr3 (191-254)||(4232094-4232156)
chr3 (191-254)||(10826903-10826965)
chr3 (191-254)||(16009605-16009667)
chr3 (191-254)||(27331092-27331154)
chr3 (191-254)||(30439491-30439553)
chr3 (191-254)||(37219371-37219433)
chr3 (191-254)||(38236335-38236397)
chr3 (191-254)||(45170807-45170869)
chr3 (191-254)||(51721978-51722040)
chr3 (191-254)||(55412029-55412091)
chr3 (204-254)||(37786241-37786290)
chr3 (204-254)||(50547652-50547701)
chr3 (185-254)||(23020597-23020665)
[»] scaffold0115 (1 HSPs)
scaffold0115 (191-262)||(22777-22847)
[»] chr8 (21 HSPs)
chr8 (191-264)||(40303524-40303596)
chr8 (191-254)||(277573-277635)
chr8 (191-254)||(638214-638276)
chr8 (191-254)||(824020-824082)
chr8 (191-254)||(18956290-18956352)
chr8 (191-262)||(23346325-23346395)
chr8 (191-254)||(26950016-26950078)
chr8 (191-254)||(30555852-30555914)
chr8 (191-254)||(38060411-38060473)
chr8 (191-254)||(39858827-39858889)
chr8 (191-254)||(43694330-43694392)
chr8 (191-254)||(13140478-13140540)
chr8 (191-254)||(27913233-27913295)
chr8 (191-254)||(27959652-27959714)
chr8 (191-254)||(30111574-30111636)
chr8 (191-254)||(36192268-36192330)
chr8 (191-254)||(41545676-41545738)
chr8 (191-254)||(42646164-42646226)
chr8 (191-254)||(42736423-42736485)
chr8 (195-254)||(44256935-44256993)
chr8 (191-254)||(45408395-45408457)
[»] chr5 (14 HSPs)
chr5 (191-264)||(20545360-20545432)
chr5 (191-262)||(744757-744827)
chr5 (191-254)||(15421134-15421196)
chr5 (191-254)||(19665744-19665806)
chr5 (191-254)||(30130116-30130178)
chr5 (193-254)||(13304618-13304678)
chr5 (191-254)||(824003-824065)
chr5 (191-254)||(9592591-9592653)
chr5 (191-254)||(11985439-11985501)
chr5 (191-254)||(12500191-12500253)
chr5 (191-254)||(27019293-27019355)
chr5 (191-254)||(27551574-27551636)
chr5 (191-254)||(37271208-37271270)
chr5 (191-264)||(37939651-37939723)
[»] chr1 (13 HSPs)
chr1 (191-264)||(7153713-7153785)
chr1 (191-254)||(10773524-10773586)
chr1 (191-254)||(36308635-36308697)
chr1 (191-254)||(51087518-51087580)
chr1 (191-253)||(44511584-44511645)
chr1 (191-254)||(14487976-14488038)
chr1 (191-254)||(14536565-14536627)
chr1 (191-254)||(33705393-33705455)
chr1 (191-254)||(35955217-35955279)
chr1 (191-248)||(36731464-36731520)
chr1 (197-254)||(52405389-52405445)
chr1 (197-254)||(52406822-52406878)
chr1 (198-254)||(29648717-29648772)
[»] chr7 (21 HSPs)
chr7 (191-254)||(724658-724720)
chr7 (191-254)||(3415278-3415340)
chr7 (191-254)||(16274397-16274459)
chr7 (191-254)||(20120820-20120882)
chr7 (191-254)||(21816197-21816259)
chr7 (191-254)||(28588739-28588801)
chr7 (191-254)||(40014812-40014874)
chr7 (191-254)||(41337099-41337161)
chr7 (191-254)||(41857778-41857840)
chr7 (191-254)||(48606747-48606809)
chr7 (191-254)||(5373667-5373729)
chr7 (191-254)||(30759211-30759273)
chr7 (191-254)||(44521220-44521282)
chr7 (191-254)||(48684057-48684119)
chr7 (191-254)||(48951407-48951469)
chr7 (20-108)||(10934464-10934545)
chr7 (191-253)||(33245765-33245826)
chr7 (191-249)||(46554627-46554684)
chr7 (204-254)||(46935411-46935460)
chr7 (204-254)||(47504439-47504488)
chr7 (191-252)||(47908133-47908193)
[»] chr6 (9 HSPs)
chr6 (191-254)||(954803-954865)
chr6 (191-254)||(5687487-5687549)
chr6 (191-254)||(11153849-11153911)
chr6 (191-254)||(14104768-14104830)
chr6 (191-254)||(28579380-28579442)
chr6 (191-264)||(11836807-11836879)
chr6 (191-264)||(16918949-16919021)
chr6 (191-254)||(27783253-27783315)
chr6 (191-264)||(23573851-23573923)
[»] chr4 (18 HSPs)
chr4 (191-254)||(3035000-3035062)
chr4 (191-254)||(4653771-4653833)
chr4 (191-254)||(16665459-16665521)
chr4 (191-254)||(17361901-17361963)
chr4 (191-254)||(20786278-20786340)
chr4 (191-254)||(23418489-23418551)
chr4 (191-254)||(27958668-27958730)
chr4 (191-254)||(35825344-35825406)
chr4 (191-254)||(46718517-46718579)
chr4 (191-254)||(52448188-52448250)
chr4 (191-254)||(54920198-54920260)
chr4 (191-253)||(41040732-41040793)
chr4 (191-254)||(20342526-20342588)
chr4 (191-254)||(20353251-20353313)
chr4 (191-254)||(31291871-31291933)
chr4 (191-254)||(35045769-35045831)
chr4 (204-254)||(9368076-9368125)
chr4 (191-264)||(34073813-34073885)
[»] chr2 (13 HSPs)
chr2 (191-254)||(76806-76868)
chr2 (191-254)||(4737407-4737469)
chr2 (191-254)||(15153366-15153428)
chr2 (191-254)||(28391123-28391185)
chr2 (191-254)||(37724681-37724743)
chr2 (191-254)||(38281437-38281499)
chr2 (191-261)||(2291462-2291531)
chr2 (191-254)||(1054312-1054374)
chr2 (191-254)||(15399791-15399853)
chr2 (191-254)||(27550784-27550846)
chr2 (191-254)||(39068174-39068236)
chr2 (191-253)||(3906081-3906142)
chr2 (107-148)||(38552133-38552174)
[»] scaffold0075 (1 HSPs)
scaffold0075 (191-254)||(18474-18536)


Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 11 - 307
Target Start/End: Original strand, 40495696 - 40495992
Alignment:
Q  11 cagagaacgaagagatgcgattggaaagaaggagatacttttggattggcaataaaaatcgatggcaatcataagaagaaagacgaagaaagtgataaaa 110  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40495696 cagagaacgaagagatacgattggaaagaaggagatacttttggattgacaataaaaatcgatggcaatcataagaagaaagacgaagaaagtgataaaa 40495795  T
Q  111 caagtatatgaagaaattggaatgaaggggatgagttttgattcacattctggaatgcaagaaacatatcaattaatttctgaatataattgttaaattt 210  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40495796 caagtatatgaagaaattggaatgaaggggatgagtttggattcacattctggaatgcaagaaacatatcaattaatttctgaatataattgttagattt 40495895  T
Q  211 aaggatattcagataaaagaaacttttatgtgaaattttaattgatataagctatcaagtacactgcttatctaacatggcgatgaatccattactt 307  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  40495896 aaggatattcagatgaaagaaacttttatgtgaaattttaattgatataagctatcaaatacactgcttatctaacatggcgatgaatccattactt 40495992  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 43339173 - 43339235
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || ||||||||||||||||||||| ||||||| ||| |||||||||||||||||    
T  43339173 tgaatataactgataaatttaaggatattcagatgaaagaaa-tttgatgtgaaattttaattg 43339235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 50610255 - 50610317
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    |||||||||||| |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  50610255 tgaatataattgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 50610317  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 260
Target Start/End: Original strand, 22605678 - 22605746
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattgatataa 260  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| ||||||||||||||||| |||||    
T  22605678 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattgttataa 22605746  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 2218807 - 2218869
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  2218807 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 2218869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 16464735 - 16464797
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  16464735 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 16464797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 18411032 - 18411094
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  18411032 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 18411094  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 18762749 - 18762811
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  18762749 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 18762811  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 27126994 - 27127056
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  27126994 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 27127056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 27324917 - 27324855
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  27324917 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 27324855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 30042722 - 30042660
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  30042722 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 30042660  T

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Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 31312862 - 31312800
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  31312862 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 31312800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 44842429 - 44842367
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  44842429 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 44842367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 253
Target Start/End: Original strand, 40906954 - 40907015
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaatt 253  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| ||||||||||||||||    
T  40906954 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaatt 40907015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 253
Target Start/End: Complemental strand, 47912191 - 47912130
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaatt 253  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| ||||||||||||||||    
T  47912191 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaatt 47912130  T

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Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 264
Target Start/End: Original strand, 11122418 - 11122490
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattgatataagcta 264  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| || |||||||||||||| | |||||||    
T  11122418 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatatgaaattttaattgttctaagcta 11122490  T

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Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 4232156 - 4232094
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| ||||||| |||||||||    
T  4232156 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaacttttaattg 4232094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 10826965 - 10826903
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||| ||| || ||||||||||||||||||||||||||||| ||| ||| |||||| ||||||    
T  10826965 tgaatgtaactgataaatttaaggatattcagataaaagaaa-tttgatgcgaaattataattg 10826903  T

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Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 16009605 - 16009667
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||| ||||||||||||    
T  16009605 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtaaaattttaattg 16009667  T

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Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 27331154 - 27331092
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||| | |||||||| ||||||| ||| |||||||||||||||||    
T  27331154 tgaatataactgataaatttaagaacattcagatgaaagaaa-tttgatgtgaaattttaattg 27331092  T

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Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 30439553 - 30439491
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| || ||||||||||||||    
T  30439553 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatatgaaattttaattg 30439491  T

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Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 37219433 - 37219371
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || ||||||||| || |||||||| ||||||| ||| |||||||||||||||||    
T  37219433 tgaatataactgataaatttaatgacattcagatgaaagaaa-tttgatgtgaaattttaattg 37219371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 38236335 - 38236397
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    |||||||||  | |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  38236335 tgaatataacagataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 38236397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 45170807 - 45170869
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| |  |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  45170807 tgaatataactaataaatttaaggaaattcagatgaaagaaa-tttgatgtgaaattttaattg 45170869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 51722040 - 51721978
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||| ||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  51722040 tgaatgtaactgataaatttaaggacattcagatgaaagaaa-tttaatgtgaaattttaattg 51721978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 55412029 - 55412091
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||| ||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  55412029 tgaatgtaaatgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 55412091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 37786241 - 37786290
Alignment:
Q  204 taaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  37786241 taaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 37786290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 50547701 - 50547652
Alignment:
Q  204 taaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  50547701 taaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 50547652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 254
Target Start/End: Original strand, 23020597 - 23020665
Alignment:
Q  185 aatttctgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||| ||||||||| || |||||||||||| |||||||| || |||| ||| || ||||||||||||||    
T  23020597 aatttatgaatataactgataaatttaaggacattcagatgaatgaaa-tttgatatgaaattttaattg 23020665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 262
Target Start/End: Original strand, 22777 - 22847
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattgatataagc 262  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| ||||||||||||||||| |||||||    
T  22777 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattgttataagc 22847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 264
Target Start/End: Complemental strand, 40303596 - 40303524
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattgatataagcta 264  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| ||||||||||||||||| | |||||||    
T  40303596 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattgttctaagcta 40303524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 277573 - 277635
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  277573 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 277635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 638276 - 638214
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  638276 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 638214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 824082 - 824020
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  824082 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 824020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 18956290 - 18956352
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  18956290 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 18956352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 262
Target Start/End: Complemental strand, 23346395 - 23346325
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattgatataagc 262  Q
    ||||||||| || |||||||||||| |||||| | ||||||| ||| ||||||||||||||||| |||||||    
T  23346395 tgaatataactgataaatttaaggacattcaggtgaaagaaa-tttgatgtgaaattttaattgttataagc 23346325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 26950078 - 26950016
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  26950078 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 26950016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 30555914 - 30555852
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  30555914 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 30555852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 38060473 - 38060411
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  38060473 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 38060411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 39858827 - 39858889
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  39858827 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 39858889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 43694392 - 43694330
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  43694392 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 43694330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 13140540 - 13140478
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| || ||||| ||||||| ||| |||||||||||||||||    
T  13140540 tgaatataactgataaatttaaggacatccagatgaaagaaa-tttgatgtgaaattttaattg 13140478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 27913233 - 27913295
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| || ||||||||||||||    
T  27913233 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatatgaaattttaattg 27913295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 27959652 - 27959714
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| || ||||||||||||||    
T  27959652 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatatgaaattttaattg 27959714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 30111574 - 30111636
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||| ||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  30111574 tgaatataaatgataaacttaaggacattcagatcaaagaaa-tttgatgtgaaattttaattg 30111636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 36192268 - 36192330
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    |||||||||  | |||||||||||||||||| || ||||||| ||| |||||||||||||||||    
T  36192268 tgaatataaccgataaatttaaggatattcatatgaaagaaa-tttgatgtgaaattttaattg 36192330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 41545676 - 41545738
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || | |||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  41545676 tgaatataactgattaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 41545738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 42646164 - 42646226
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||| ||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  42646164 tgaatgtaactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 42646226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 42736423 - 42736485
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || ||||||||| || |||||||| ||||||| ||| |||||||||||||||||    
T  42736423 tgaatataactgataaatttaaagacattcagatgaaagaaa-tttgatgtgaaattttaattg 42736485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 254
Target Start/End: Original strand, 44256935 - 44256993
Alignment:
Q  195 tataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  44256935 tataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 44256993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 45408457 - 45408395
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||| ||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  45408457 tgaatgtaactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 45408395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 264
Target Start/End: Complemental strand, 20545432 - 20545360
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattgatataagcta 264  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| ||||||||||||||||| | |||||||    
T  20545432 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattgttctaagcta 20545360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 262
Target Start/End: Complemental strand, 744827 - 744757
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattgatataagc 262  Q
    ||||| ||| || |||||||||||| |||||||| ||||||| ||| ||||||||||||||||| |||||||    
T  744827 tgaatgtaactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattgttataagc 744757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 15421134 - 15421196
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  15421134 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 15421196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 19665744 - 19665806
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  19665744 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 19665806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 30130178 - 30130116
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  30130178 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 30130116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 254
Target Start/End: Complemental strand, 13304678 - 13304618
Alignment:
Q  193 aatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  13304678 aatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 13304618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 824065 - 824003
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||| | |||||||| ||||||| ||| |||||||||||||||||    
T  824065 tgaatataactgataaatttaagtacattcagatgaaagaaa-tttgatgtgaaattttaattg 824003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 9592591 - 9592653
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||| ||||||||||||    
T  9592591 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtaaaattttaattg 9592653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 11985439 - 11985501
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||| ||| ||| |||||||||||||||||    
T  11985439 tgaatataactgataaatttaaggaaattcagatgaaataaa-tttgatgtgaaattttaattg 11985501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 12500191 - 12500253
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||| ||| ||||||| ||| |||||||||||||||||    
T  12500191 tgaatataactgataaatttaaggacattcggatgaaagaaa-tttgatgtgaaattttaattg 12500253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 27019355 - 27019293
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||| ||| ||| |||||||||||||||||    
T  27019355 tgaatataactgataaatttaaggacattcagatgaaataaa-tttgatgtgaaattttaattg 27019293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 27551574 - 27551636
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||| ||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  27551574 tgaatgtaactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 27551636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 37271208 - 37271270
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| ||| |||||||||||||    
T  37271208 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgcgaaattttaattg 37271270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 264
Target Start/End: Complemental strand, 37939723 - 37939651
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattgatataagcta 264  Q
    ||||||||| || |||||||||| |  ||||||| ||||||| ||| ||||||||||||||||| | |||||||    
T  37939723 tgaatataactgataaatttaagaacgttcagatgaaagaaa-tttgatgtgaaattttaattgttctaagcta 37939651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 264
Target Start/End: Original strand, 7153713 - 7153785
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattgatataagcta 264  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| ||||||||||||||||| | |||||||    
T  7153713 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattgttctaagcta 7153785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 10773524 - 10773586
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  10773524 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 10773586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 36308635 - 36308697
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  36308635 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 36308697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 51087518 - 51087580
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  51087518 tgaatataactgataaatttaaggacattcagattaaagaaa-tttgatgtgaaattttaattg 51087580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 253
Target Start/End: Complemental strand, 44511645 - 44511584
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaatt 253  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| ||||||||||||||||    
T  44511645 tgaatataactggtaaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaatt 44511584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 14488038 - 14487976
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||| ||||||||    
T  14488038 tgaatataactgataaatttaaggacattcagattaaagaaa-tttgatgtgaaaatttaattg 14487976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 14536627 - 14536565
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||| ||||||||    
T  14536627 tgaatataactgataaatttaaggacattcagattaaagaaa-tttgatgtgaaaatttaattg 14536565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 33705393 - 33705455
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||| ||||||||||||    
T  33705393 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtaaaattttaattg 33705455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 35955217 - 35955279
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||  ||||||| ||| |||||||||||||||||    
T  35955217 tgaatataactgataaatttaaggacattcagaagaaagaaa-tttgatgtgaaattttaattg 35955279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 248
Target Start/End: Original strand, 36731464 - 36731520
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattt 248  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||    
T  36731464 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattt 36731520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 52405389 - 52405445
Alignment:
Q  197 taattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    |||||| |||||||||||| |||||||| ||||||| ||| ||||||||||| |||||    
T  52405389 taattgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaatttgaattg 52405445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 52406822 - 52406878
Alignment:
Q  197 taattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    |||||| |||||||||||| |||||||| ||||||| ||| ||||||||||| |||||    
T  52406822 taattgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaatttgaattg 52406878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 254
Target Start/End: Complemental strand, 29648772 - 29648717
Alignment:
Q  198 aattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||| |||||||||||| ||||| || |||||| |||| |||||||||||||||||    
T  29648772 aattgataaatttaaggacattcaaatgaaagaa-ctttgatgtgaaattttaattg 29648717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 724720 - 724658
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  724720 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 724658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 3415340 - 3415278
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  3415340 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 3415278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 16274459 - 16274397
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  16274459 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 16274397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 20120820 - 20120882
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  20120820 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 20120882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 21816197 - 21816259
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  21816197 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 21816259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 28588801 - 28588739
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  28588801 tgaatataactgataaatttaaggaaattcagatgaaagaaa-tttgatgtgaaattttaattg 28588739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 40014874 - 40014812
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  40014874 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 40014812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 41337099 - 41337161
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  41337099 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 41337161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 41857840 - 41857778
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  41857840 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 41857778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 48606809 - 48606747
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||||||||||| ||| |||| ||||||||||||    
T  48606809 tgaatataactgataaatttaaggacattcagataaaagaaa-tttgatgtcaaattttaattg 48606747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 5373729 - 5373667
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| ||||| || ||||||| ||| |||||||||||||||||    
T  5373729 tgaatataactgataaatttaaggacattcacatgaaagaaa-tttgatgtgaaattttaattg 5373667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 30759273 - 30759211
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||| ||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  30759273 tgaatgtaactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 30759211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 44521282 - 44521220
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||| ||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  44521282 tgaatgtaactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 44521220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 48684057 - 48684119
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||| ||| ||||||| ||| |||||||||||||||||    
T  48684057 tgaatataactgataaatttaaggacattcggatgaaagaaa-tttgatgtgaaattttaattg 48684119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 48951469 - 48951407
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || ||||||||| || |||||||| ||||||| ||| |||||||||||||||||    
T  48951469 tgaatataactgataaatttaatgacattcagatgaaagaaa-tttgatgtgaaattttaattg 48951407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 10934464 - 10934545
Alignment:
Q  20 aagagatgcgattggaaagaaggagatacttttggattggcaataaaaatcgatggcaatcataagaagaaagacgaagaaagtgataa 108  Q
    ||||||||| |||| || |||||||||||||||||||||||       ||||||||||||   || |||||||| ||||||||||||||    
T  10934464 aagagatgcaattgaaatgaaggagatacttttggattggc-------atcgatggcaattgcaacaagaaagaagaagaaagtgataa 10934545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 253
Target Start/End: Complemental strand, 33245826 - 33245765
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaatt 253  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| ||| ||||||||||||    
T  33245826 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgggaaattttaatt 33245765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 249
Target Start/End: Complemental strand, 46554684 - 46554627
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaatttt 249  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| ||||||||||||    
T  46554684 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaatttt 46554627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 46935460 - 46935411
Alignment:
Q  204 taaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  46935460 taaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 46935411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 47504439 - 47504488
Alignment:
Q  204 taaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  47504439 taaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 47504488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 252
Target Start/End: Complemental strand, 47908193 - 47908133
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaat 252  Q
    ||||||||| || |||||||||||| |||||||| ||| ||| ||| |||||||||||||||    
T  47908193 tgaatataactgataaatttaaggacattcagatgaaa-aaaatttgatgtgaaattttaat 47908133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 954865 - 954803
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||||||| ||| ||| |||||||||||||||||    
T  954865 tgaatataactgataaatttaaggacattcagataaaataaa-tttgatgtgaaattttaattg 954803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 5687549 - 5687487
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  5687549 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 5687487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 11153911 - 11153849
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  11153911 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 11153849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 14104768 - 14104830
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  14104768 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 14104830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 28579380 - 28579442
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  28579380 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 28579442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 264
Target Start/End: Complemental strand, 11836879 - 11836807
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattgatataagcta 264  Q
    ||||||||| || |||||||||| | |||||||| ||||||| ||| ||||||||||||||||| | |||||||    
T  11836879 tgaatataactgataaatttaagaacattcagatgaaagaaa-tttgatgtgaaattttaattgttctaagcta 11836807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 264
Target Start/End: Original strand, 16918949 - 16919021
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattgatataagcta 264  Q
    ||||||||| || |||||||||| | |||||||| ||||||| ||| ||||||||||||||||| | |||||||    
T  16918949 tgaatataactgataaatttaagaacattcagatgaaagaaa-tttgatgtgaaattttaattgttctaagcta 16919021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 27783253 - 27783315
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||| | ||||||| ||| |||||||||||||||||    
T  27783253 tgaatataactgataaatttaaggacattcagttgaaagaaa-tttgatgtgaaattttaattg 27783315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 264
Target Start/End: Original strand, 23573851 - 23573923
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattgatataagcta 264  Q
    ||||||||| || |||||||||| |  ||||||| ||||||| ||| ||||||||||||||||| | |||||||    
T  23573851 tgaatataactgataaatttaagtactttcagatgaaagaaa-tttgatgtgaaattttaattgttctaagcta 23573923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 3035062 - 3035000
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  3035062 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 3035000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 4653771 - 4653833
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  4653771 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 4653833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 16665459 - 16665521
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  16665459 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 16665521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 17361901 - 17361963
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  17361901 tgaatataagtgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 17361963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 20786340 - 20786278
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  20786340 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 20786278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 23418551 - 23418489
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  23418551 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 23418489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 27958730 - 27958668
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    |||||||||||  |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  27958730 tgaatataatttataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 27958668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 35825344 - 35825406
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  35825344 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 35825406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 46718517 - 46718579
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  46718517 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 46718579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 52448188 - 52448250
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  52448188 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 52448250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 54920198 - 54920260
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  54920198 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 54920260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 253
Target Start/End: Complemental strand, 41040793 - 41040732
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaatt 253  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| ||||||||||||||||    
T  41040793 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaatt 41040732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 20342588 - 20342526
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||| ||| ||| |||||||||||||||||    
T  20342588 tgaatataactgataaatttaaggacattcagatgaaataaa-tttgatgtgaaattttaattg 20342526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 20353313 - 20353251
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||| ||| ||| |||||||||||||||||    
T  20353313 tgaatataactgataaatttaaggacattcagatgaaa-aaaatttgatgtgaaattttaattg 20353251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 31291933 - 31291871
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || || ||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  31291933 tgaatataactgatagatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 31291871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 35045769 - 35045831
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||| ||| ||| |||||||||||||||||    
T  35045769 tgaatataactgataaatttaaggacattcagatgaaataaa-tttgatgtgaaattttaattg 35045831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 9368125 - 9368076
Alignment:
Q  204 taaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  9368125 taaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 9368076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 264
Target Start/End: Original strand, 34073813 - 34073885
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattgatataagcta 264  Q
    ||||| ||| || |||||||||||| |||||||| ||||||| ||| ||||| ||||||||||| | |||||||    
T  34073813 tgaatgtaactgataaatttaaggacattcagatgaaagaaa-tttgatgtgtaattttaattgttctaagcta 34073885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 76868 - 76806
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  76868 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 76806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 4737469 - 4737407
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  4737469 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 4737407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 15153366 - 15153428
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  15153366 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 15153428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 28391185 - 28391123
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  28391185 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 28391123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 37724743 - 37724681
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  37724743 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 37724681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 38281499 - 38281437
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  38281499 tgaatataactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 38281437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 261
Target Start/End: Complemental strand, 2291531 - 2291462
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattgatataag 261  Q
    ||||||||| || |||||||||||| |||||||| |||| || ||| ||||||||||||||||| ||||||    
T  2291531 tgaatataactgataaatttaaggacattcagatgaaaggaa-tttgatgtgaaattttaattgttataag 2291462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 1054374 - 1054312
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||| ||||| |||||||| ||||||| ||| |||||||||||||||||    
T  1054374 tgaatataactgataaattcaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 1054312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 15399791 - 15399853
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| |||||||| ||| ||| ||| |||||||||||||||||    
T  15399791 tgaatataactgataaatttaaggacattcagatgaaa-aaaatttgatgtgaaattttaattg 15399853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 27550846 - 27550784
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||| ||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  27550846 tgaatgtaactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 27550784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 39068236 - 39068174
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||||||| || |||||||||||| ||||| || ||||||| ||| |||||||||||||||||    
T  39068236 tgaatataactgataaatttaaggacattcaaatgaaagaaa-tttaatgtgaaattttaattg 39068174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 253
Target Start/End: Complemental strand, 3906142 - 3906081
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaatt 253  Q
    ||||||||| || |||||||||||| | |||||| ||||||| ||| ||||||||||||||||    
T  3906142 tgaatataactgataaatttaaggacaatcagatgaaagaaa-tttgatgtgaaattttaatt 3906081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 38552174 - 38552133
Alignment:
Q  107 aaaacaagtatatgaagaaattggaatgaaggggatgagttt 148  Q
    |||||||||||||||||||||| ||| |||||||||| ||||    
T  38552174 aaaacaagtatatgaagaaattagaacgaaggggatgtgttt 38552133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 18536 - 18474
Alignment:
Q  191 tgaatataattgttaaatttaaggatattcagataaaagaaacttttatgtgaaattttaattg 254  Q
    ||||| ||| || |||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  18536 tgaatgtaactgataaatttaaggacattcagatgaaagaaa-tttgatgtgaaattttaattg 18474  T

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