View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1336_low_20 (Length: 284)

Name: NF1336_low_20
Description: NF1336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1336_low_20
NF1336_low_20
[»] chr4 (2 HSPs)
chr4 (30-284)||(25587749-25588003)
chr4 (217-253)||(13501559-13501595)
[»] chr3 (10 HSPs)
chr3 (207-254)||(25537484-25537531)
chr3 (213-262)||(17058827-17058876)
chr3 (213-253)||(634889-634929)
chr3 (217-253)||(5561721-5561757)
chr3 (214-252)||(20685468-20685506)
chr3 (213-253)||(13503319-13503359)
chr3 (213-261)||(42595669-42595717)
chr3 (213-253)||(44328393-44328433)
chr3 (214-254)||(53581343-53581383)
chr3 (212-248)||(54549401-54549437)
[»] chr8 (3 HSPs)
chr8 (213-253)||(4424682-4424722)
chr8 (213-253)||(10543969-10544009)
chr8 (207-251)||(13523171-13523215)
[»] chr7 (4 HSPs)
chr7 (207-253)||(28544170-28544216)
chr7 (214-254)||(13596975-13597015)
chr7 (213-253)||(21505014-21505054)
chr7 (214-254)||(26754935-26754975)
[»] chr2 (6 HSPs)
chr2 (213-255)||(19933950-19933992)
chr2 (213-253)||(29992087-29992127)
chr2 (213-253)||(3981806-3981846)
chr2 (214-254)||(5849190-5849230)
chr2 (213-253)||(22849523-22849563)
chr2 (213-253)||(33845710-33845750)
[»] chr6 (4 HSPs)
chr6 (214-254)||(5827630-5827670)
chr6 (213-248)||(35220255-35220290)
chr6 (213-262)||(7072608-7072657)
chr6 (213-253)||(24177709-24177749)
[»] chr5 (3 HSPs)
chr5 (213-253)||(25585967-25586007)
chr5 (213-250)||(5584032-5584069)
chr5 (213-250)||(20351259-20351296)
[»] chr1 (2 HSPs)
chr1 (213-250)||(42311956-42311993)
chr1 (214-254)||(42132094-42132134)
[»] scaffold0044 (1 HSPs)
scaffold0044 (213-253)||(11031-11071)
[»] scaffold0006 (1 HSPs)
scaffold0006 (213-253)||(203204-203244)


Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 30 - 284
Target Start/End: Original strand, 25587749 - 25588003
Alignment:
Q  30 cttcttattttttctccctatacagtaatgaactgttttatctcacaacaatggactaattttaccatgatatcatagatttcaaatagtaatattatga 129  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  25587749 cttcttattttttctccctatacaataatgaactgttttatctcacaacaatggactaattttaccacgatatcatagattttaaatagtaatattatga 25587848  T
Q  130 caataaaattggttaaatacgattagagaaatagcaagttaactaggaaagaaatgtaaaactacgttctcttcttcttatttaaactctagtgttgagt 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25587849 caataaaattggttaaatacgattagagaaatagcaagttaactaggaaagaaatgtaaaactacgttctcttcttcttatttaaactctagtgttgagt 25587948  T
Q  230 ttgttcggagacaagcaaatgaggctcctcatgctcttgtagaggtggccacatt 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25587949 ttgttcggagacaagcaaatgaggctcctcatgctcttgtagaggtggccacatt 25588003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 253
Target Start/End: Original strand, 13501559 - 13501595
Alignment:
Q  217 tctagtgttgagtttgttcggagacaagcaaatgagg 253  Q
    ||||||||||||||||| |||||||||||||||||||    
T  13501559 tctagtgttgagtttgtacggagacaagcaaatgagg 13501595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 207 - 254
Target Start/End: Complemental strand, 25537531 - 25537484
Alignment:
Q  207 ttatttaaactctagtgttgagtttgttcggagacaagcaaatgaggc 254  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25537531 ttatttaaactctagtgttgagtttgtgcggagacaagcaaatgaggc 25537484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 262
Target Start/End: Complemental strand, 17058876 - 17058827
Alignment:
Q  213 aaactctagtgttgagtttgttcggagacaagcaaatgaggctcctcatg 262  Q
    ||||||||||||||||||||| ||||||||||||||||||| | ||||||    
T  17058876 aaactctagtgttgagtttgtgcggagacaagcaaatgaggttgctcatg 17058827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 634889 - 634929
Alignment:
Q  213 aaactctagtgttgagtttgttcggagacaagcaaatgagg 253  Q
    |||||| ||||| ||||||||||||||||||||||||||||    
T  634889 aaactcgagtgtagagtttgttcggagacaagcaaatgagg 634929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 253
Target Start/End: Complemental strand, 5561757 - 5561721
Alignment:
Q  217 tctagtgttgagtttgttcggagacaagcaaatgagg 253  Q
    ||||||||||||||||| |||||||||||||||||||    
T  5561757 tctagtgttgagtttgtacggagacaagcaaatgagg 5561721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Original strand, 20685468 - 20685506
Alignment:
Q  214 aactctagtgttgagtttgttcggagacaagcaaatgag 252  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  20685468 aactctagtgttgagtttgtgaggagacaagcaaatgag 20685506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 13503319 - 13503359
Alignment:
Q  213 aaactctagtgttgagtttgttcggagacaagcaaatgagg 253  Q
    ||||||| ||||||||||||| ||||| |||||||||||||    
T  13503319 aaactcttgtgttgagtttgtacggaggcaagcaaatgagg 13503359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 42595717 - 42595669
Alignment:
Q  213 aaactctagtgttgagtttgttcggagacaagcaaatgaggctcctcat 261  Q
    |||||| ||||| ||||||||  |||||||||||||||| |||||||||    
T  42595717 aaactcaagtgtagagtttgtgaggagacaagcaaatgaagctcctcat 42595669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 44328393 - 44328433
Alignment:
Q  213 aaactctagtgttgagtttgttcggagacaagcaaatgagg 253  Q
    ||||||||||||||||||| | || ||||||||||||||||    
T  44328393 aaactctagtgttgagtttttacgaagacaagcaaatgagg 44328433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 53581343 - 53581383
Alignment:
Q  214 aactctagtgttgagtttgttcggagacaagcaaatgaggc 254  Q
    ||||||||| ||||||||||  |||||||||||||||||||    
T  53581343 aactctagttttgagtttgtaaggagacaagcaaatgaggc 53581383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 54549401 - 54549437
Alignment:
Q  212 taaactctagtgttgagtttgttcggagacaagcaaa 248  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  54549401 taaactctagtgttgagtttgtgcggagacaaacaaa 54549437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 4424722 - 4424682
Alignment:
Q  213 aaactctagtgttgagtttgttcggagacaagcaaatgagg 253  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  4424722 aaactctagtgttgagtttgtacggagacaagcaaatgagg 4424682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 10543969 - 10544009
Alignment:
Q  213 aaactctagtgttgagtttgttcggagacaagcaaatgagg 253  Q
    |||||| | |||||||||||| |||||||||||||||||||    
T  10543969 aaactcgactgttgagtttgtacggagacaagcaaatgagg 10544009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 251
Target Start/End: Complemental strand, 13523215 - 13523171
Alignment:
Q  207 ttatttaaactctagtgttgagtttgttcggagacaagcaaatga 251  Q
    |||| |||||||| ||||||||||||| ||||| |||||||||||    
T  13523215 ttatgtaaactcttgtgttgagtttgtacggaggcaagcaaatga 13523171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 253
Target Start/End: Original strand, 28544170 - 28544216
Alignment:
Q  207 ttatttaaactctagtgttgagtttgttcggagacaagcaaatgagg 253  Q
    |||| |||||||||||||||||||||| || ||||||||||||||||    
T  28544170 ttatgtaaactctagtgttgagtttgtacgaagacaagcaaatgagg 28544216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 13596975 - 13597015
Alignment:
Q  214 aactctagtgttgagtttgttcggagacaagcaaatgaggc 254  Q
    ||||||||||||||||||||  |||||||||||||||||||    
T  13596975 aactctagtgttgagtttgtgaggagacaagcaaatgaggc 13597015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 21505014 - 21505054
Alignment:
Q  213 aaactctagtgttgagtttgttcggagacaagcaaatgagg 253  Q
    ||||||| ||||||||||||| ||||| |||||||||||||    
T  21505014 aaactcttgtgttgagtttgtacggaggcaagcaaatgagg 21505054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 26754935 - 26754975
Alignment:
Q  214 aactctagtgttgagtttgttcggagacaagcaaatgaggc 254  Q
    |||| |||||||||||||||  |||||||||||||||||||    
T  26754935 aactatagtgttgagtttgtgaggagacaagcaaatgaggc 26754975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 255
Target Start/End: Complemental strand, 19933992 - 19933950
Alignment:
Q  213 aaactctagtgttgagtttgttcggagacaagcaaatgaggct 255  Q
    |||||| ||||| ||||||||||||||||||||||||||||||    
T  19933992 aaactcgagtgtagagtttgttcggagacaagcaaatgaggct 19933950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 29992087 - 29992127
Alignment:
Q  213 aaactctagtgttgagtttgttcggagacaagcaaatgagg 253  Q
    ||||||| ||||||||||||| |||||||||||||||||||    
T  29992087 aaactcttgtgttgagtttgtacggagacaagcaaatgagg 29992127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 3981846 - 3981806
Alignment:
Q  213 aaactctagtgttgagtttgttcggagacaagcaaatgagg 253  Q
    |||||||||||| |||||| ||||||||||||| |||||||    
T  3981846 aaactctagtgtggagtttattcggagacaagcgaatgagg 3981806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 5849190 - 5849230
Alignment:
Q  214 aactctagtgttgagtttgttcggagacaagcaaatgaggc 254  Q
    ||||||||||||||||||||  |||||||| ||||||||||    
T  5849190 aactctagtgttgagtttgtgaggagacaaacaaatgaggc 5849230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 22849523 - 22849563
Alignment:
Q  213 aaactctagtgttgagtttgttcggagacaagcaaatgagg 253  Q
    ||||||| ||||||||||||| ||||| |||||||||||||    
T  22849523 aaactcttgtgttgagtttgtacggaggcaagcaaatgagg 22849563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 33845750 - 33845710
Alignment:
Q  213 aaactctagtgttgagtttgttcggagacaagcaaatgagg 253  Q
    ||||||| ||||||||||||| ||||| |||||||||||||    
T  33845750 aaactctcgtgttgagtttgtacggaggcaagcaaatgagg 33845710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 5827630 - 5827670
Alignment:
Q  214 aactctagtgttgagtttgttcggagacaagcaaatgaggc 254  Q
    ||||||||||||||||||||  |||||||||||||||||||    
T  5827630 aactctagtgttgagtttgtaaggagacaagcaaatgaggc 5827670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 248
Target Start/End: Complemental strand, 35220290 - 35220255
Alignment:
Q  213 aaactctagtgttgagtttgttcggagacaagcaaa 248  Q
    ||||||||||||||||||||| ||||||||||||||    
T  35220290 aaactctagtgttgagtttgtacggagacaagcaaa 35220255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 262
Target Start/End: Complemental strand, 7072657 - 7072608
Alignment:
Q  213 aaactctagtgttgagtttgttcggagacaagcaaatgaggctcctcatg 262  Q
    ||||||||||||||||||||| | ||||||| ||||||||| | ||||||    
T  7072657 aaactctagtgttgagtttgtgcagagacaatcaaatgaggttgctcatg 7072608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 24177709 - 24177749
Alignment:
Q  213 aaactctagtgttgagtttgttcggagacaagcaaatgagg 253  Q
    ||||||| ||||||||||||| ||||| |||||||||||||    
T  24177709 aaactcttgtgttgagtttgtacggaggcaagcaaatgagg 24177749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 25586007 - 25585967
Alignment:
Q  213 aaactctagtgttgagtttgttcggagacaagcaaatgagg 253  Q
    ||||||| ||||||||||||| |||||||||||||||||||    
T  25586007 aaactctggtgttgagtttgtacggagacaagcaaatgagg 25585967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 250
Target Start/End: Original strand, 5584032 - 5584069
Alignment:
Q  213 aaactctagtgttgagtttgttcggagacaagcaaatg 250  Q
    |||||| ||||| |||||||||||||||||||||||||    
T  5584032 aaactcgagtgtagagtttgttcggagacaagcaaatg 5584069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 250
Target Start/End: Complemental strand, 20351296 - 20351259
Alignment:
Q  213 aaactctagtgttgagtttgttcggagacaagcaaatg 250  Q
    |||||| ||||| |||||||||||||||||||||||||    
T  20351296 aaactcgagtgtagagtttgttcggagacaagcaaatg 20351259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 250
Target Start/End: Original strand, 42311956 - 42311993
Alignment:
Q  213 aaactctagtgttgagtttgttcggagacaagcaaatg 250  Q
    |||||| ||||| |||||||||||||||||||||||||    
T  42311956 aaactcgagtgtagagtttgttcggagacaagcaaatg 42311993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 42132094 - 42132134
Alignment:
Q  214 aactctagtgttgagtttgttcggagacaagcaaatgaggc 254  Q
    ||||||||||||||||||||  |||||||| ||||||||||    
T  42132094 aactctagtgttgagtttgtgaggagacaaacaaatgaggc 42132134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 11031 - 11071
Alignment:
Q  213 aaactctagtgttgagtttgttcggagacaagcaaatgagg 253  Q
    ||||||| ||||||||||||| ||||| |||||||||||||    
T  11031 aaactctcgtgttgagtttgtacggaggcaagcaaatgagg 11071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 203244 - 203204
Alignment:
Q  213 aaactctagtgttgagtttgttcggagacaagcaaatgagg 253  Q
    ||||||| ||||||||||||| ||||| |||||||||||||    
T  203244 aaactcttgtgttgagtttgtacggaggcaagcaaatgagg 203204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University