View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1336_low_25 (Length: 241)
Name: NF1336_low_25
Description: NF1336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1336_low_25 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 20 - 241
Target Start/End: Complemental strand, 40496323 - 40496103
Alignment:
| Q |
20 |
acgtttgcattttaccatctccgttcgcactatgatccaatcatatcaaataaaatcatgactaactttattgatgtattcataatattcatttcacacc |
119 |
Q |
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| T |
40496323 |
acgtttgcattttaccatctccgttcgcactatgatccaatcatatcaaataaaatcatgactaactttattgatgtattcataatattcatttcacacc |
40496224 |
T |
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| Q |
120 |
acatgcatcatattagaaacttccaaccaattttatannnnnnnnnatnnnnnnntgaaattgaaccgaaaattttacatgaacgatattattttcttaa |
219 |
Q |
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| T |
40496223 |
acatgcatcatattagaaacttccaaccaattttata-ttttttttataaaaaaatgaaattgaaccgaatattttacatgaacgatattattttcttaa |
40496125 |
T |
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| Q |
220 |
aattgaatacattctagcagtc |
241 |
Q |
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| T |
40496124 |
aattgaatacattctagcagtc |
40496103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 107 - 149
Target Start/End: Complemental strand, 40470078 - 40470036
Alignment:
| Q |
107 |
ttcatttcacaccacatgcatcatattagaaacttccaaccaa |
149 |
Q |
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| T |
40470078 |
ttcatttcacaccacatgcattacattagaaacttccaaccaa |
40470036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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