View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1336_low_3 (Length: 637)
Name: NF1336_low_3
Description: NF1336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1336_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 9 - 501
Target Start/End: Complemental strand, 394872 - 394380
Alignment:
| Q |
9 |
gataatactggtatggacttgatgcttgttactttctaaatcactcgcactcatagatgtgcatatatatccacacctatcaattatcattgaaatgtgt |
108 |
Q |
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| T |
394872 |
gataatactggtatggacttgatgcttgttactttctaaatcactcgcactcatagacgtgcatatatatccacacctatcaattatcattgaaatgtgt |
394773 |
T |
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| Q |
109 |
acacttttagtgtgtagagaaaaatataaatctacctaactaggtcttgtgggagataagttttggaactattcttgttaagttttggatgtggtgtcac |
208 |
Q |
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| T |
394772 |
acacttttagtgtgtagagaaaaatataaatctacctaactaggtcttgtgggagataagttttggaactattcttgttaagttttggatgtggtgtcac |
394673 |
T |
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| Q |
209 |
atagtaattgttgaattcatacaaacccacagacgttttatgtgatatcacaatagtttgcttctgatagatactggtattaagggggtagattatatgg |
308 |
Q |
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| T |
394672 |
atagtaattgttgaattcatacaaacccacagatgttttatgtgatatcacgatagtttgcttctgatagatactggtattaagggggtagattatatgg |
394573 |
T |
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| Q |
309 |
atagaagacttgtttattgacggataatgatcataacctcttggaataacttccaaaagaagtggttacataaaaacagaaattggtaactgccgcaaca |
408 |
Q |
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| T |
394572 |
atagaagacttgtttattgacggataatgatgataacctcttggaataatttccaaaagaagtggttacataaaaacagaaattggtaactgccgcaaca |
394473 |
T |
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| Q |
409 |
agcagaaagtgtgagacacaaccaaccactaagagttagagatcctagtatctcccttccctaaccaataataaaaataacctgattgtttac |
501 |
Q |
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| T |
394472 |
agcagaaagtgtgagacacaaccaaccactaagaattagagatcctagtatctcccttccctaaccaataataaaaataacctgattgtttac |
394380 |
T |
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Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 309 - 388
Target Start/End: Complemental strand, 11978491 - 11978412
Alignment:
| Q |
309 |
atagaagacttgtttattgacggataatgatcataacctcttggaataacttccaaaagaagtggttacataaaaacaga |
388 |
Q |
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|||||| ||||||||||| | ||||| |||| |||||||||| |||||||||||||||| ||| ||||||||||||||| |
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| T |
11978491 |
atagaatacttgtttatttatggatattgatgataacctcttaaaataacttccaaaagaggtgattacataaaaacaga |
11978412 |
T |
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