View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1336_low_4 (Length: 608)
Name: NF1336_low_4
Description: NF1336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1336_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 466; Significance: 0; HSPs: 13)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 97 - 598
Target Start/End: Original strand, 37939279 - 37939780
Alignment:
| Q |
97 |
tcactttggttttcatccacttcagtaaccacaggctctactttctctgtttcagctggccctgcttcgtcgttcttagtctctttcagtatcgctgcct |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37939279 |
tcactttggttttcatccacttcagtaaccacaggctctactttctctgtttcagctggccctgcttcgtcgttcttagtctctttcagtatcgctgcct |
37939378 |
T |
|
| Q |
197 |
caaattctaattctcttgacttttcttctacagcaatgaaatcattggtttctgtagactgttctggaattgaagatgcgtttggttgctcctcttccct |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37939379 |
caaattctaattctcttgacttttcttctacagcaatgacatcattggtttctgtagactgttctggaattgaagatgcgtttggttgctcctcttccct |
37939478 |
T |
|
| Q |
297 |
tcgttccgttgaatgttgttctggttctttctgattttcctcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagcc |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37939479 |
tcgttccgttgaatgttgttctggttctttctgattttcctcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagcc |
37939578 |
T |
|
| Q |
397 |
acgggttcttcttttaccgtttctgtagcttgaacttcagtagccacaggttcttcttttgccgtttctgtaggatcaacttcagtaaccacaggtttga |
496 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37939579 |
acaggttcttcttttaccgtttctgtagcttgaacttcagtagccacaggttcttcttttaccatttctctaggatcaacttcagtaaccacaggtttga |
37939678 |
T |
|
| Q |
497 |
cttttactgattctgtcagatcaacttcagtaaccacgggttcttttactgtttctgtagcttcaacttctgtagccacagcttcttcttttactgtctc |
596 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37939679 |
cttttactgattctgtcagatcaacttcagtaaccaggggttcttttactgtttttgtaatttcaacttctgtagccacagcttcttcttttactgtctc |
37939778 |
T |
|
| Q |
597 |
tg |
598 |
Q |
| |
|
|| |
|
|
| T |
37939779 |
tg |
37939780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 335 - 598
Target Start/End: Original strand, 37940099 - 37940365
Alignment:
| Q |
335 |
cctcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttc |
434 |
Q |
| |
|
||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||| |
|
|
| T |
37940099 |
cctcaacttcagttgccacaggttcttcttttaccgtttctgtaggctcaacttcagtagccacgggttcttcttttactgtttctgtagcttcagcttc |
37940198 |
T |
|
| Q |
435 |
agtagccacaggttcttcttttgccgtttctgtaggatcaacttcagtaaccacaggtttgacttttactgattctgtcagatcaacttcagtaaccacg |
534 |
Q |
| |
|
|||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||| | |||||| | | |||||||||| | | |
|
|
| T |
37940199 |
agtagctagaggttcttcttttaccgtttctgtaggatcaacttcagtaaccacaggttcgtcttttacggtttctgtaaccttaacttcagtagctgca |
37940298 |
T |
|
| Q |
535 |
gg---ttcttttactgtttctgtagcttcaacttctgtagccacagcttcttcttttactgtctctg |
598 |
Q |
| |
|
|| ||||||||||||||| ||||| |||||||| ||||||||| ||||||||||| ||| |||| |
|
|
| T |
37940299 |
ggttcttcttttactgtttccgtagcctcaacttcagtagccacaagttcttcttttagtgtttctg |
37940365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 337 - 590
Target Start/End: Original strand, 37939966 - 37940222
Alignment:
| Q |
337 |
tcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttcag |
436 |
Q |
| |
|
|||||||||||| |||| ||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
37939966 |
tcaacttcagtagccactggttcttcttttactgtttctgtagcttcaacttcagtagccactggttcttcttttactgtttctgtagcttcaacttcag |
37940065 |
T |
|
| Q |
437 |
tagccacaggttcttcttttgccgtttctgtaggatcaacttcagtaaccacaggtttgacttttactgattctgtcagatcaacttcagtaaccacggg |
536 |
Q |
| |
|
|||| ||||||| |||||| |||||||||||| ||||||||||| ||||||||| ||||||| | |||||| | |||||||||||| ||||||| |
|
|
| T |
37940066 |
tagctgcaggttcgtcttttaccgtttctgtagcctcaacttcagttgccacaggttcttcttttaccgtttctgtaggctcaacttcagtagccacggg |
37940165 |
T |
|
| Q |
537 |
---ttcttttactgtttctgtagcttcaacttctgtagccacagcttcttcttttac |
590 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||| | || |||||||||||| |
|
|
| T |
37940166 |
ttcttcttttactgtttctgtagcttcagcttcagtagctagaggttcttcttttac |
37940222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 337 - 598
Target Start/End: Original strand, 37939921 - 37940185
Alignment:
| Q |
337 |
tcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttcag |
436 |
Q |
| |
|
|||||||||||| |||||| ||| |||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
37939921 |
tcaacttcagtagccacagattcttcttttactgtttctgtagcttcaacttcagtagccactggttcttcttttactgtttctgtagcttcaacttcag |
37940020 |
T |
|
| Q |
437 |
tagccacaggttcttcttttgccgtttctgtaggatcaacttcagtaaccacaggtttgacttttactgattctgtcagatcaacttcagtaaccacggg |
536 |
Q |
| |
|
||||||| |||||||||||| | |||||||||| |||||||||||| | |||||| | ||||||| | |||||| ||||||||||| |||| || |
|
|
| T |
37940021 |
tagccactggttcttcttttactgtttctgtagcttcaacttcagtagctgcaggttcgtcttttaccgtttctgtagcctcaacttcagttgccacagg |
37940120 |
T |
|
| Q |
537 |
---ttcttttactgtttctgtagcttcaacttctgtagccacagcttcttcttttactgtctctg |
598 |
Q |
| |
|
||||||||| |||||||||| |||||||| |||||||| | ||||||||||||||| |||| |
|
|
| T |
37940121 |
ttcttcttttaccgtttctgtaggctcaacttcagtagccacgggttcttcttttactgtttctg |
37940185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 353 - 590
Target Start/End: Original strand, 37939847 - 37940087
Alignment:
| Q |
353 |
caggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttcagtagccacaggttcttc |
452 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||| |||| | ||| |||||||||||||| ||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
37939847 |
caggttcatcttttaccatttctgtaggctcaactacagttgtcacaggttcttcttttacggtttctgtagcttcaacttcagtagccacagattcttc |
37939946 |
T |
|
| Q |
453 |
ttttgccgtttctgtaggatcaacttcagtaaccacaggtttgacttttactgattctgtcagatcaacttcagtaaccacggg---ttcttttactgtt |
549 |
Q |
| |
|
|||| | |||||||||| |||||||||||| |||| |||| ||||||||| |||||| |||||||||||| |||| || ||||||||||||| |
|
|
| T |
37939947 |
ttttactgtttctgtagcttcaacttcagtagccactggttcttcttttactgtttctgtagcttcaacttcagtagccactggttcttcttttactgtt |
37940046 |
T |
|
| Q |
550 |
tctgtagcttcaacttctgtagccacagcttcttcttttac |
590 |
Q |
| |
|
||||||||||||||||| ||||| ||| ||| |||||||| |
|
|
| T |
37940047 |
tctgtagcttcaacttcagtagctgcaggttcgtcttttac |
37940087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 337 - 593
Target Start/End: Original strand, 37940056 - 37940315
Alignment:
| Q |
337 |
tcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttcag |
436 |
Q |
| |
|
|||||||||||| | ||||||| ||||||| |||||||||| |||||||||||| ||||| ||||||||||||||||||||||||| | |||||||| |
|
|
| T |
37940056 |
tcaacttcagtagctgcaggttcgtcttttaccgtttctgtagcctcaacttcagttgccacaggttcttcttttaccgtttctgtaggctcaacttcag |
37940155 |
T |
|
| Q |
437 |
tagccacaggttcttcttttgccgtttctgtaggatcaacttcagtaaccacaggtttgacttttactgattctgtcagatcaacttcagtaaccacggg |
536 |
Q |
| |
|
||||||| |||||||||||| | |||||||||| ||| |||||||| | | ||||| ||||||| | |||||| ||||||||||||||||||| || |
|
|
| T |
37940156 |
tagccacgggttcttcttttactgtttctgtagcttcagcttcagtagctagaggttcttcttttaccgtttctgtaggatcaacttcagtaaccacagg |
37940255 |
T |
|
| Q |
537 |
t---tcttttactgtttctgtagcttcaacttctgtagccacagcttcttcttttactgt |
593 |
Q |
| |
|
| |||||||| ||||||||| | | |||||| ||||| ||| ||||||||||||||| |
|
|
| T |
37940256 |
ttcgtcttttacggtttctgtaaccttaacttcagtagctgcaggttcttcttttactgt |
37940315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 351 - 590
Target Start/End: Original strand, 37939890 - 37940132
Alignment:
| Q |
351 |
cacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttcagtagccacaggttct |
450 |
Q |
| |
|
||||||||| ||||||| |||||||||| ||||||||||||||||| | |||||||||||| ||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
37939890 |
cacaggttcttcttttacggtttctgtagcttcaacttcagtagccacagattcttcttttactgtttctgtagcttcaacttcagtagccactggttct |
37939989 |
T |
|
| Q |
451 |
tcttttgccgtttctgtaggatcaacttcagtaaccacaggtttgacttttactgattctgtcagatcaacttcagtaaccacgggt---tcttttactg |
547 |
Q |
| |
|
|||||| | |||||||||| |||||||||||| |||| |||| ||||||||| |||||| |||||||||||| | | ||| |||||||| | |
|
|
| T |
37939990 |
tcttttactgtttctgtagcttcaacttcagtagccactggttcttcttttactgtttctgtagcttcaacttcagtagctgcaggttcgtcttttaccg |
37940089 |
T |
|
| Q |
548 |
tttctgtagcttcaacttctgtagccacagcttcttcttttac |
590 |
Q |
| |
|
|||||||||| |||||||| || ||||||| |||||||||||| |
|
|
| T |
37940090 |
tttctgtagcctcaacttcagttgccacaggttcttcttttac |
37940132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 337 - 598
Target Start/End: Original strand, 37939786 - 37940050
Alignment:
| Q |
337 |
tcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttcag |
436 |
Q |
| |
|
|||||||||||||| | |||||| ||||||| |||||||| | ||| | ||||||||| | ||||| ||||||||| ||||||||| | |||| ||| |
|
|
| T |
37939786 |
tcaacttcagtaactataggttcgtcttttaccgtttctgttgcctcgaattcagtagctgcaggttcatcttttaccatttctgtaggctcaactacag |
37939885 |
T |
|
| Q |
437 |
tagccacaggttcttcttttgccgtttctgtaggatcaacttcagtaaccacaggtttgacttttactgattctgtcagatcaacttcagtaaccacggg |
536 |
Q |
| |
|
| | |||||||||||||||| | |||||||||| |||||||||||| |||||| || ||||||||| |||||| |||||||||||| |||| || |
|
|
| T |
37939886 |
ttgtcacaggttcttcttttacggtttctgtagcttcaacttcagtagccacagattcttcttttactgtttctgtagcttcaacttcagtagccactgg |
37939985 |
T |
|
| Q |
537 |
---ttcttttactgtttctgtagcttcaacttctgtagccacagcttcttcttttactgtctctg |
598 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| | ||||||||||||||| |||| |
|
|
| T |
37939986 |
ttcttcttttactgtttctgtagcttcaacttcagtagccactggttcttcttttactgtttctg |
37940050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 336 - 599
Target Start/End: Original strand, 37940145 - 37940411
Alignment:
| Q |
336 |
ctcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttca |
435 |
Q |
| |
|
||||||||||||| |||| ||||| |||||||||||||||||| ||| |||||||||| | ||||||||||||||||||||||||| | ||||||| |
|
|
| T |
37940145 |
ctcaacttcagtagccacgggttcttcttttactgtttctgtagcttcagcttcagtagctagaggttcttcttttaccgtttctgtaggatcaacttca |
37940244 |
T |
|
| Q |
436 |
gtagccacaggttcttcttttgccgtttctgtaggatcaacttcagtaaccacaggtttgacttttactgattctgtcagatcaacttcagtaaccacgg |
535 |
Q |
| |
|
||| |||||||||| |||||| | ||||||||| | |||||||||| | |||||| ||||||||| ||| || |||||||||||| |||| |
|
|
| T |
37940245 |
gtaaccacaggttcgtcttttacggtttctgtaaccttaacttcagtagctgcaggttcttcttttactgtttccgtagcctcaacttcagtagccacaa |
37940344 |
T |
|
| Q |
536 |
gttctt---ttactgtttctgtagcttcaacttctgtagccacagcttcttcttttactgtctctgc |
599 |
Q |
| |
|
|||||| ||| |||||||||||| |||||||| ||| |||| | ||||||||||||| ||||||| |
|
|
| T |
37940345 |
gttcttcttttagtgtttctgtagcctcaacttcagtaaccacgggttcttcttttactatctctgc |
37940411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 337 - 598
Target Start/End: Original strand, 37939741 - 37940005
Alignment:
| Q |
337 |
tcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttcag |
436 |
Q |
| |
|
|||||||| ||| |||||| ||| |||||||||| |||||||| |||||||||||| | | ||||| ||||||||||||||||| || | | ||||| |
|
|
| T |
37939741 |
tcaacttctgtagccacagcttcttcttttactgtctctgtaggatcaacttcagtaactataggttcgtcttttaccgtttctgttgcctcgaattcag |
37939840 |
T |
|
| Q |
437 |
tagccacaggttcttcttttgccgtttctgtaggatcaacttcagtaaccacaggtttgacttttactgattctgtcagatcaacttcagtaaccacgg- |
535 |
Q |
| |
|
|||| ||||||| |||||| || |||||||||| |||||| |||| |||||||| ||||||| | |||||| |||||||||||| |||| | |
|
|
| T |
37939841 |
tagctgcaggttcatcttttaccatttctgtaggctcaactacagttgtcacaggttcttcttttacggtttctgtagcttcaacttcagtagccacaga |
37939940 |
T |
|
| Q |
536 |
--gttcttttactgtttctgtagcttcaacttctgtagccacagcttcttcttttactgtctctg |
598 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| | ||||||||||||||| |||| |
|
|
| T |
37939941 |
ttcttcttttactgtttctgtagcttcaacttcagtagccactggttcttcttttactgtttctg |
37940005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 337 - 512
Target Start/End: Original strand, 37939654 - 37939826
Alignment:
| Q |
337 |
tcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttcag |
436 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||| | |||||||||||| ||| |||||||| |||| |||| |||| || |||||| | |
|
|
| T |
37939654 |
tcaacttcagtaaccacaggtttgacttttactgattctgtcagatcaacttcagtaaccaggggttctt---ttactgtttttgtaatttcaacttctg |
37939750 |
T |
|
| Q |
437 |
tagccacaggttcttcttttgccgtttctgtaggatcaacttcagtaaccacaggtttgacttttactgattctgt |
512 |
Q |
| |
|
||||||||| |||||||||| | || ||||||||||||||||||||||| | ||||| | ||||||| | |||||| |
|
|
| T |
37939751 |
tagccacagcttcttcttttactgtctctgtaggatcaacttcagtaactataggttcgtcttttaccgtttctgt |
37939826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 335 - 413
Target Start/End: Original strand, 37940324 - 37940402
Alignment:
| Q |
335 |
cctcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttac |
413 |
Q |
| |
|
|||||||||||||| ||||| |||| |||||| ||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
37940324 |
cctcaacttcagtagccacaagttcttcttttagtgtttctgtagcctcaacttcagtaaccacgggttcttcttttac |
37940402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 335 - 424
Target Start/End: Original strand, 37940369 - 37940458
Alignment:
| Q |
335 |
cctcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtag |
424 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||| | |||| || | ||||||| ||| ||| |||||||||||| || |||||||||| |
|
|
| T |
37940369 |
cctcaacttcagtaaccacgggttcttcttttactatctctgcagtcgcaacttcggtaaccatgggttcttctttcactgtttctgtag |
37940458 |
T |
|
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