View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1336_low_7 (Length: 540)
Name: NF1336_low_7
Description: NF1336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1336_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 96 - 348
Target Start/End: Complemental strand, 52162665 - 52162415
Alignment:
| Q |
96 |
atggcttggtggcaccgctacaaatctgcaagcttcgtattcacattattcatcattatttccatgataatatggttagcttgctttggggttcgtagga |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52162665 |
atggcttggtggcaccgctacaaatctgcaagcttcgtattcacattattcatcattattttcatgataatatggttagcttgctttggggttcgtagga |
52162566 |
T |
|
| Q |
196 |
aagaacataattctggtannnnnnnngcgataatcaattgtttcatatacatttgttagataaattgctgaaattaggttctttgttttaaatccttgtt |
295 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52162565 |
aagaacataattctggtatttttt--gcgataatgaattgtttcatatacatttgttagataaattgctgaaattaggttctttgttttaaatccttgtt |
52162468 |
T |
|
| Q |
296 |
attccattgtttgaaatgtttacttttgtttatgaatatgaactattacattg |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52162467 |
attccattgtttgaaatgtttacttttgtttatgaatatgaactattacattg |
52162415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 409 - 512
Target Start/End: Complemental strand, 52162378 - 52162276
Alignment:
| Q |
409 |
tcctgtgcttgaaagtcagtcgtttccgtatcatttttcttgaatgattttaattttacttcttnnnnnnncgttttaaaattagcatatattaaaaaga |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||| |
|
|
| T |
52162378 |
tcctgtgcttgaaagtcagtcgtttccgtatcatttttcttgaatgattttaattttacttctt-aaaaaacgttttaaaattagcatacatcaaaaaga |
52162280 |
T |
|
| Q |
509 |
atgt |
512 |
Q |
| |
|
|||| |
|
|
| T |
52162279 |
atgt |
52162276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University