View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1336_low_8 (Length: 493)
Name: NF1336_low_8
Description: NF1336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1336_low_8 |
 | |
|
| [»] scaffold0640 (1 HSPs) |
| | |
|
| [»] scaffold0274 (1 HSPs) |
| | |
|
| [»] scaffold0648 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 28)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 96 - 432
Target Start/End: Original strand, 19381220 - 19381556
Alignment:
| Q |
96 |
gaaagatctcgacttatcgagcgcggtaatttcgttggtagatagaaataagtttacgaatcttatagaaagaatacccagcgaacttattctgtcaaag |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19381220 |
gaaagatctcgacttatcgagcgcggtaatttcgttggtagatagaaataagtttacgaatcttatagaaagaatacccagcgaacttattctgtcaaag |
19381319 |
T |
|
| Q |
196 |
aattcaatttctgtagacatgtctaacctaacactttcttgttcatggttaagtctggatcacaataatttcacatgtggactcccaaacatatcaccaa |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
19381320 |
aattcaatttctgtagacatgtctaacctaacactttcttgttcatggttaagtctggatcacaataatttcacaagtggactcccaaacatatcaccaa |
19381419 |
T |
|
| Q |
296 |
tggccgagtttgttgatttgtcttacaactccttctcaggatcaattccgcatagttggaagaacttgtcagaacttgaagtcttgaaactgtggagtaa |
395 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19381420 |
cggccgagtttgttgatttgtcttacaactccttctcaggatcaattccgcatagttggaagaacttgtcagaacttgaagtcttgaaactgtggagtaa |
19381519 |
T |
|
| Q |
396 |
taggctgtctggtgaagttctagcacacctctctgct |
432 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19381520 |
taggctgtctggtgaagttctagcacacctctctgct |
19381556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 108 - 432
Target Start/End: Original strand, 19375961 - 19376285
Alignment:
| Q |
108 |
cttatcgagcgcggtaatttcgttggtagatagaaataagtttacgaatcttatagaaagaatacccagcgaacttattctgtcaaagaattcaatttct |
207 |
Q |
| |
|
||||| |||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||| | | | |||| |||||||||| |||||||||||| |
|
|
| T |
19375961 |
cttatggagctcgggaattttattggtagatagaaataagtttacgaatcttatagaaagaatacgcggtgtactttttctgtcaaacaattcaatttct |
19376060 |
T |
|
| Q |
208 |
gtagacatgtctaacctaacactttcttgttcatggttaagtctggatcacaataatttcacatgtggactcccaaacatatcaccaatggccgagtttg |
307 |
Q |
| |
|
| |||||| ||||||||||||||||||||||||| |||| | |||||||||||||||||||| |||||||||||||||||||||||||| || | || |
|
|
| T |
19376061 |
gaagacatatctaacctaacactttcttgttcattgttacatttggatcacaataatttcacaggtggactcccaaacatatcaccaatgaccaatcatg |
19376160 |
T |
|
| Q |
308 |
ttgatttgtcttacaactccttctcaggatcaattccgcatagttggaagaacttgtcagaacttgaagtcttgaaactgtggagtaataggctgtctgg |
407 |
Q |
| |
|
|||| |||||| |||||||||||| ||||||||||| |||||||||||||||||||||||| | ||| ||||| || |||||||||||||| ||||| |
|
|
| T |
19376161 |
ttgacgtgtctttcaactccttctctggatcaattccacatagttggaagaacttgtcagaattgaaagagttgaacctatggagtaataggctatctgg |
19376260 |
T |
|
| Q |
408 |
tgaagttctagcacacctctctgct |
432 |
Q |
| |
|
|||||||||||| |||||||||||| |
|
|
| T |
19376261 |
tgaagttctagctcacctctctgct |
19376285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 109 - 432
Target Start/End: Original strand, 17942294 - 17942617
Alignment:
| Q |
109 |
ttatcgagcgcggtaatttcgttggtagatagaaataagtttacgaatcttatagaaagaatacccagcgaacttattctgtcaaagaattcaatttctg |
208 |
Q |
| |
|
||||||||| | | ||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||| || | ||||||| ||||| ||| ||| |
|
|
| T |
17942294 |
ttatcgagctcaggaatttcgttggtagatagaaataagttctcgagccttatagaaagaatacccaatgaaatttatttgtcaaataattcgattgctg |
17942393 |
T |
|
| Q |
209 |
tagacatgtctaacctaacactttcttgttcatggttaagtctggatcacaataatttcacatgtggactcccaaacatatcaccaatggccgagtttgt |
308 |
Q |
| |
|
|||||| || ||||| ||||| |||||| ||| |||||||||||||||||||| | |||||||| ||||||||||||||| || | | |
|
|
| T |
17942394 |
aagacatatccaaccttacactaaattgttccactttattgttggatcacaataatttcacaggaggactcccgaacatatcaccaatgtccaatagaat |
17942493 |
T |
|
| Q |
309 |
tgatttgtcttacaactccttctcaggatcaattccgcatagttggaagaacttgtcagaacttgaagtcttgaaactgtggagtaataggctgtctggt |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||| |
|
|
| T |
17942494 |
tgatttgtcttacaactccttctcaggatcaattccacatagttggaagaacttgtcagaactggaagtcttgaacctatggagtaataggctgtctggt |
17942593 |
T |
|
| Q |
409 |
gaagttctagcacacctctctgct |
432 |
Q |
| |
|
||||||||| |||||||||||||| |
|
|
| T |
17942594 |
gaagttctaacacacctctctgct |
17942617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 103 - 415
Target Start/End: Original strand, 19393483 - 19393795
Alignment:
| Q |
103 |
ctcgacttatcgagcgcggtaatttcgttggtagatagaaataagtttacgaatcttatagaaagaatacccagcgaacttattctgtcaaagaattcaa |
202 |
Q |
| |
|
||||||||||||||| | | ||||||| ||||| ||||||||||||| | | ||||||||||||||| || | ||| ||||| ||||||| ||||| | |
|
|
| T |
19393483 |
ctcgacttatcgagctcaggaatttcgctggtaaatagaaataagttctcaaggcttatagaaagaatatccggtgaaattattttgtcaaacaattcga |
19393582 |
T |
|
| Q |
203 |
tttctgtagacatgtctaacctaacactttcttgttcatggttaagtctggatcacaataatttcacatgtggactcccaaacatatcaccaatggccga |
302 |
Q |
| |
|
|| ||| |||||| ||||||||||| || ||||| | ||| | |||||||||||||||||||| | ||||||||||||||||| |||||||| || |
|
|
| T |
19393583 |
ttgctgaagacatatctaacctaactctaaattgtttctttttatggttggatcacaataatttcacaggaggactcccaaacatatctccaatggcaga |
19393682 |
T |
|
| Q |
303 |
gtttgttgatttgtcttacaactccttctcaggatcaattccgcatagttggaagaacttgtcagaacttgaagtcttgaaactgtggagtaataggctg |
402 |
Q |
| |
|
| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| || |||||||||| |||| |
|
|
| T |
19393683 |
ttgggttgatttgtcttataactccttctcaggatcaattccacatagttggaagaacttgtcagaactggaagtcttgaacctatggagtaataagctg |
19393782 |
T |
|
| Q |
403 |
tctggtgaagttc |
415 |
Q |
| |
|
||||||||||||| |
|
|
| T |
19393783 |
tctggtgaagttc |
19393795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 101 - 414
Target Start/End: Original strand, 18144522 - 18144835
Alignment:
| Q |
101 |
atctcgacttatcgagcgcggtaatttcgttggtagatagaaataagtttacgaatcttatagaaagaatacccagcgaacttattctgtcaaagaattc |
200 |
Q |
| |
|
|||||||| |||||||| || ||||||||||||||||||||||||||| ||| ||||||||||||||||| || ||| ||||| ||||||| |||| |
|
|
| T |
18144522 |
atctcgacatatcgagcttgggaatttcgttggtagatagaaataagttctcgagccttatagaaagaatacctagtgaaattattttgtcaaacaattg |
18144621 |
T |
|
| Q |
201 |
aatttctgtagacatgtctaacctaacactttcttgttcatggttaagtctggatcacaataatttcacatgtggactcccaaacatatcaccaatggcc |
300 |
Q |
| |
|
||| ||| |||||| |||||||||||||| |||||| | |||| |||||||||||||||||||| | ||||| ||||||||||| ||||||||| |
|
|
| T |
18144622 |
gattgctgaagacatatctaacctaacactaaattgttcgtacataaggttggatcacaataatttcacaggaggactaccaaacatatcgccaatggcc |
18144721 |
T |
|
| Q |
301 |
gagtttgttgatttgtcttacaactccttctcaggatcaattccgcatagttggaagaacttgtcagaacttgaagtcttgaaactgtggagtaataggc |
400 |
Q |
| |
|
| | |||||||||||||||||| || |||| |||||||||||| ||||||||||||||||| |||||| | ||||||| || ||||||||||||| |
|
|
| T |
18144722 |
tattatgttgatttgtcttacaattcattctgaggatcaattccatatagttggaagaacttgaaagaactgacattcttgaatctatggagtaataggc |
18144821 |
T |
|
| Q |
401 |
tgtctggtgaagtt |
414 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
18144822 |
tgtctggtgaagtt |
18144835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 102 - 415
Target Start/End: Original strand, 19414517 - 19414830
Alignment:
| Q |
102 |
tctcgacttatcgagcgcggtaatttcgttggtagatagaaataagtttacgaatcttatagaaagaatacccagcgaacttattctgtcaaagaattca |
201 |
Q |
| |
|
|||||||||||||||| ||| |||||| || ||||||||||||||||| ||| ||||||||| ||||| |||||| | ||||||| |||| |
|
|
| T |
19414517 |
tctcgacttatcgagctcgggaatttcattcgtagatagaaataagttctcgagccttatagaaggaatatatgatgaactttatttgtcaaacaatttg |
19414616 |
T |
|
| Q |
202 |
atttctgtagacatgtctaacctaacactttcttgttcatggttaagtctggatcacaataatttcacatgtggactcccaaacatatcaccaatggccg |
301 |
Q |
| |
|
||| | | |||||| |||||||||||||| |||||| ||| | |||||||||||| ||||||| ||||||| ||||||||||||||||| | || |
|
|
| T |
19414617 |
attgcagaagacatatctaacctaacactgaattgttccgcattatttttggatcacaatagtttcacaggtggacttccaaacatatcaccaattgtcg |
19414716 |
T |
|
| Q |
302 |
agtttgttgatttgtcttacaactccttctcaggatcaattccgcatagttggaagaacttgtcagaacttgaagtcttgaaactgtggagtaataggct |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||| ||||||||||||||||| |
|
|
| T |
19414717 |
agtttgttgatttgtcttacaactccttctcaggatcaattccacatagttggaagaacttgaaagaactgacagtcttgaacctgtggagtaataggct |
19414816 |
T |
|
| Q |
402 |
gtctggtgaagttc |
415 |
Q |
| |
|
||||||||||||| |
|
|
| T |
19414817 |
atctggtgaagttc |
19414830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 102 - 407
Target Start/End: Original strand, 18147163 - 18147468
Alignment:
| Q |
102 |
tctcgacttatcgagcgcggtaatttcgttggtagatagaaataagtttacgaatcttatagaaagaatacccagcgaacttattctgtcaaagaattca |
201 |
Q |
| |
|
|||||||||||| ||| | | |||||| || ||||||||||||||||| ||| ||||||||||||||| | | ||||||||| ||||||| ||||| |
|
|
| T |
18147163 |
tctcgacttatcaagctcaggaatttcattcgtagatagaaataagttctcgagccttatagaaagaatatctactgaacttattttgtcaaacaattcg |
18147262 |
T |
|
| Q |
202 |
atttctgtagacatgtctaacctaacactttcttgttcatggttaagtctggatcacaataatttcacatgtggactcccaaacatatcaccaatggccg |
301 |
Q |
| |
|
||| | | |||||| |||||||||||||| |||||| | ||| | ||||| |||||| ||||||| ||||||| ||||||||||||||||| |||| |
|
|
| T |
18147263 |
attgcagaagacatatctaacctaacactgaattgttcctcattatttttggataacaatagtttcacaggtggacttccaaacatatcaccaattgccg |
18147362 |
T |
|
| Q |
302 |
agtttgttgatttgtcttacaactccttctcaggatcaattccgcatagttggaagaacttgtcagaacttgaagtcttgaaactgtggagtaataggct |
401 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| | ||| |||| |||| ||||||||||||||| | |
|
|
| T |
18147363 |
agtttgttgatttgtcctacaactccttctcaggatcaattccgcatacttggaagaacttgaaaaaaccgagagtcatgaacctgtggagtaataggtt |
18147462 |
T |
|
| Q |
402 |
gtctgg |
407 |
Q |
| |
|
|||||| |
|
|
| T |
18147463 |
gtctgg |
18147468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 102 - 404
Target Start/End: Original strand, 19437291 - 19437593
Alignment:
| Q |
102 |
tctcgacttatcgagcgcggtaatttcgttggtagatagaaataagtttacgaatcttatagaaagaatacccagcgaacttattctgtcaaagaattca |
201 |
Q |
| |
|
|||||||||||||||| || |||| |||||||||||||||||||||| || ||||||||||||||||||| ||||||| | ||||||| ||||| |
|
|
| T |
19437291 |
tctcgacttatcgagctcgagaattgcgttggtagatagaaataagttcttgagccttatagaaagaatacccaatgaacttagtttgtcaaacaattcg |
19437390 |
T |
|
| Q |
202 |
atttctgtagacatgtctaacctaacactttcttgttcatggttaagtctggatcacaataatttcacatgtggactcccaaacatatcaccaatggccg |
301 |
Q |
| |
|
||| ||| |||||| |||||||||||||| |||||| ||| ||||||||||||||||| | | ||||||||||||||||||| ||| ||| |
|
|
| T |
19437391 |
attgctgaagacatatctaacctaacactaaattgttccatcttattcttggatcacaataatttcgtaggaggactcccaaacatatcactaattgccc |
19437490 |
T |
|
| Q |
302 |
agtttgttgatttgtcttacaactccttctcaggatcaattccgcatagttggaagaacttgtcagaacttgaagtcttgaaactgtggagtaataggct |
401 |
Q |
| |
|
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||| ||||||||||||||| | |
|
|
| T |
19437491 |
aaatagttgatttgtcttacaactccttctcaggatcaattccgcatagttggaagaacttgaaagaactgagagtcatgaacctgtggagtaataggtt |
19437590 |
T |
|
| Q |
402 |
gtc |
404 |
Q |
| |
|
||| |
|
|
| T |
19437591 |
gtc |
19437593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 101 - 407
Target Start/End: Original strand, 18016354 - 18016660
Alignment:
| Q |
101 |
atctcgacttatcgagcgcggtaatttcgttggtagatagaaataagtttacgaatcttatagaaagaatacccagcgaacttattctgtcaaagaattc |
200 |
Q |
| |
|
|||||||| |||||||||||| |||||| |||||||||||| ||||||| ||| ||||||||||||||| || | || || ||||||| ||||| |
|
|
| T |
18016354 |
atctcgacatatcgagcgcgggaatttcattggtagatagatataagttctcgagccttatagaaagaatatccttttatattgttttgtcaaacaattc |
18016453 |
T |
|
| Q |
201 |
aatttctgtagacatgtctaacctaacactttcttgttcatggttaagtctggatcacaataatttcacatgtggactcccaaacatatcaccaatggcc |
300 |
Q |
| |
|
||| ||| ||| || ||||||||||||||| |||||| |||||| ||||||| |||||||||||| | |||||||||||| ||||||||| | | |
|
|
| T |
18016454 |
gattgctgaagatatatctaacctaacacttaattgttcggtgttaaggttggatcataataatttcacaggaggactcccaaacctatcaccaaagcct |
18016553 |
T |
|
| Q |
301 |
gagtttgttgatttgtcttacaactccttctcaggatcaattccgcatagttggaagaacttgtcagaacttgaagtcttgaaactgtggagtaataggc |
400 |
Q |
| |
|
| | |||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||| |||| ||||||| ||||| || |
|
|
| T |
18016554 |
gcgattgttgatttatcttacaactccttctcaagatcaattccacatagttggaagaacttgtcagaactgagagtcatgaacctgtggaataataagc |
18016653 |
T |
|
| Q |
401 |
tgtctgg |
407 |
Q |
| |
|
||||||| |
|
|
| T |
18016654 |
tgtctgg |
18016660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 101 - 430
Target Start/End: Complemental strand, 17727205 - 17726876
Alignment:
| Q |
101 |
atctcgacttatcgagcgcggtaatttcgttggtagatagaaataagtttacgaatcttatagaaagaatacccagcgaacttattctgtcaaagaattc |
200 |
Q |
| |
|
||||||||||||||| | ||| |||| | |||||||||| ||| |||||| ||| |||||||| ||||||||| | |||||| ||||||| ||||| |
|
|
| T |
17727205 |
atctcgacttatcgaactcgggaattacattggtagatacaaaaaagttttcgagacttatagagagaatacccggttttcttattttgtcaaacaattc |
17727106 |
T |
|
| Q |
201 |
aatttctgtagacatgtctaacctaacactttcttgttcatggttaagtctggatcacaataatttcacatgtggactcccaaacatatcaccaatggcc |
300 |
Q |
| |
|
|||| || |||||| |||||||||||||| |||||| | ||| |||||||||||||||||||| | |||||||||||| ||||||||||||| |
|
|
| T |
17727105 |
aattgttgaagacatatctaacctaacactaatttgttcctacttattgttggatcacaataatttcacaggaggactcccaaacctatcaccaatggct |
17727006 |
T |
|
| Q |
301 |
gagtttgttgatttgtcttacaactccttctcaggatcaattccgcatagttggaagaacttgtcagaacttgaagtcttgaaactgtggagtaataggc |
400 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||| | | || | || || ||||||||||||| |
|
|
| T |
17727005 |
ttaacagttgatttgtcttacaattccttctcaggatcaattccagatagttggaagaacttgagagaactaggactcctaaacctatggagtaataggc |
17726906 |
T |
|
| Q |
401 |
tgtctggtgaagttctagcacacctctctg |
430 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |
|
|
| T |
17726905 |
tgtctggtgaagttctaggacacctctctg |
17726876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 101 - 430
Target Start/End: Complemental strand, 19028434 - 19028105
Alignment:
| Q |
101 |
atctcgacttatcgagcgcggtaatttcgttggtagatagaaataagtttacgaatcttatagaaagaatacccagcgaacttattctgtcaaagaattc |
200 |
Q |
| |
|
||||||||||||||| | ||| |||| | |||||||||| ||| |||||| ||| |||||||| ||||||||| | |||||| ||||||| ||||| |
|
|
| T |
19028434 |
atctcgacttatcgaactcgggaattacattggtagatacaaaaaagttttcgagacttatagagagaatacccggttttcttattttgtcaaacaattc |
19028335 |
T |
|
| Q |
201 |
aatttctgtagacatgtctaacctaacactttcttgttcatggttaagtctggatcacaataatttcacatgtggactcccaaacatatcaccaatggcc |
300 |
Q |
| |
|
|||| || |||||| |||||||||||||| |||||| | ||| |||||||||||||||||||| | |||||||||||| ||||||||||||| |
|
|
| T |
19028334 |
aattgttgaagacatatctaacctaacactaatttgttcctacttattgttggatcacaataatttcacaggaggactcccaaacctatcaccaatggct |
19028235 |
T |
|
| Q |
301 |
gagtttgttgatttgtcttacaactccttctcaggatcaattccgcatagttggaagaacttgtcagaacttgaagtcttgaaactgtggagtaataggc |
400 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||| | | || | || || ||||||||||||| |
|
|
| T |
19028234 |
ttaacagttgatttgtcttacaattccttctcaggatcaattccagatagttggaagaacttgagagaactaggactcctaaacctatggagtaataggc |
19028135 |
T |
|
| Q |
401 |
tgtctggtgaagttctagcacacctctctg |
430 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |
|
|
| T |
19028134 |
tgtctggtgaagttctaggacacctctctg |
19028105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 101 - 430
Target Start/End: Complemental strand, 18873552 - 18873217
Alignment:
| Q |
101 |
atctcgacttatcgagcgcggtaatttcgttggtagatagaaataagtttacgaatcttatagaaagaatacccagcgaacttattctgtcaaagaattc |
200 |
Q |
| |
|
|||||||| |||||||||| | ||||||||||||| ||||||||||||| ||| ||||||||||||||||||| | |||||| ||||||| |||| |
|
|
| T |
18873552 |
atctcgacatatcgagcgccgaaatttcgttggtaaatagaaataagttctcgagccttatagaaagaatacccaattatcttattttgtcaaacaattt |
18873453 |
T |
|
| Q |
201 |
aatttctgtagacatgtctaacctaacactttcttgttcatggttaagtctggatcacaataatttcacatgtggactcccaaacata------tcacca |
294 |
Q |
| |
|
||| ||| |||||| |||||| ||||||| ||||| || |||||| | |||||||||||||||||| | ||||||||||||||| ||| || |
|
|
| T |
18873452 |
gattgctgaagacatatctaacataacactaaattgtttctgcttaagtttagatcacaataatttcacaggaggactcccaaacatagttggatcagca |
18873353 |
T |
|
| Q |
295 |
atggccgagtttgttgatttgtcttacaactccttctcaggatcaattccgcatagttggaagaacttgtcagaacttgaagtcttgaaactgtggagta |
394 |
Q |
| |
|
|| | | | |||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||| ||||||||| |||||||||| |
|
|
| T |
18873352 |
attgagaaaataattgatttgtcttacaattccttctcaggatcaattccacatagttggaagaacttgaaagaactgatagtcttgaacctgtggagta |
18873253 |
T |
|
| Q |
395 |
ataggctgtctggtgaagttctagcacacctctctg |
430 |
Q |
| |
|
||||||| ||||||||||||| || |||||||||| |
|
|
| T |
18873252 |
ataggctatctggtgaagttcaagatcacctctctg |
18873217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 102 - 415
Target Start/End: Original strand, 19334342 - 19334655
Alignment:
| Q |
102 |
tctcgacttatcgagcgcggtaatttcgttggtagatagaaataagtttacgaatcttatagaaagaatacccagcgaacttattctgtcaaagaattca |
201 |
Q |
| |
|
|||||| ||||| | | ||| |||||| |||||||||||| ||||||| |||| |||||||||||| || ||| |||||| ||||||| ||||| |
|
|
| T |
19334342 |
tctcgagttatcaaactcgggaatttcattggtagatagacataagttctcgaaccttatagaaagagtagccaattctcttattttgtcaaacaattcg |
19334441 |
T |
|
| Q |
202 |
atttctgtagacatgtctaacctaacactttcttgttcatggttaagtctggatcacaataatttcacatgtggactcccaaacatatcaccaatggccg |
301 |
Q |
| |
|
||| ||| |||||| || ||||||||||| ||||| | ||| | ||||| ||||||||||| || | |||||||||||| |||||||||||||| |
|
|
| T |
19334442 |
attgctgaagacatatccaacctaacactaaattgtttgttcttatggttggataacaataatttcgcaagaggactcccaaacttatcaccaatggcct |
19334541 |
T |
|
| Q |
302 |
agtttgttgatttgtcttacaactccttctcaggatcaattccgcatagttggaagaacttgtcagaacttgaagtcttgaaactgtggagtaataggct |
401 |
Q |
| |
|
| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| | || |||| || |||||||||||||| |
|
|
| T |
19334542 |
gggtagttgatttgtcttacaactccttctcaggatcaattccacatagttggaagaacttgaaagaactatcactcctgaacctatggagtaataggct |
19334641 |
T |
|
| Q |
402 |
gtctggtgaagttc |
415 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
19334642 |
gtctggtgaagttc |
19334655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 101 - 430
Target Start/End: Original strand, 25463382 - 25463711
Alignment:
| Q |
101 |
atctcgacttatcgagcgcggtaatttcgttggtagatagaaataagtttacgaatcttatagaaagaatacccagcgaacttattctgtcaaagaattc |
200 |
Q |
| |
|
||||||||||||||||| ||| |||||| | ||| ||||||||||||||| ||| | || | ||||||||| | |||||| ||||||| ||||| |
|
|
| T |
25463382 |
atctcgacttatcgagctcgggaatttcatcggtggatagaaataagttttcgagcttgattggaagaatacctggttctcttattttgtcaaacaattc |
25463481 |
T |
|
| Q |
201 |
aatttctgtagacatgtctaacctaacactttcttgttcatggtta-agtctggatcacaataatttcacatgtggactcccaaacatatcaccaatggc |
299 |
Q |
| |
|
||||||| |||||| |||||||||||||| ||||||||||||| ||| |||||| ||||||||||||| | ||||| ||||| |||||||||||||| |
|
|
| T |
25463482 |
gatttctggagacatatctaacctaacactaaattgttcatggttagagt-tggatcgcaataatttcacaagaggacttccaaatatatcaccaatggc |
25463580 |
T |
|
| Q |
300 |
cgagtttgttgatttgtcttacaactccttctcaggatcaattccgcatagttggaagaacttgtcagaacttgaagtcttgaaactgtggagtaatagg |
399 |
Q |
| |
|
| | | ||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||| ||| | || | | || |||||| ||||||| |
|
|
| T |
25463581 |
ccaaatagttgacatgtcttacaactccttctcaggatcaattccacatggttggaagaacttgaaagatttacaatacattaacttgtggaataatagg |
25463680 |
T |
|
| Q |
400 |
ctgtctggtgaagttctagcacacctctctg |
430 |
Q |
| |
|
|| |||||||||||||||| ||||||||||| |
|
|
| T |
25463681 |
ctatctggtgaagttctagtacacctctctg |
25463711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 98 - 359
Target Start/End: Original strand, 18165485 - 18165746
Alignment:
| Q |
98 |
aagatctcgacttatcgagcgcggtaatttcgttggtagatagaaataagtttacgaatcttatagaaagaatacccagcgaacttattctgtcaaagaa |
197 |
Q |
| |
|
|||||||||||||||||| | | |||||| ||| |||||| ||||||||| | | | ||||||||||||||| | | |||||||| ||||||| || |
|
|
| T |
18165485 |
aagatctcgacttatcgaattcaggaatttcattgctagataaaaataagttcaaggaccttatagaaagaataactggacaacttattttgtcaaacaa |
18165584 |
T |
|
| Q |
198 |
ttcaatttctgtagacatgtctaacctaacactttcttgttcatggttaagtctggatcacaataatttcacatgtggactcccaaacatatcaccaatg |
297 |
Q |
| |
|
||| ||| || |||||| |||||||||||||| ||||| ||| || |||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
18165585 |
ttcgattgttgaagacatatctaacctaacactaaattgttttgacttacgtttggatcacaataatttcacaggaggactcccaaacatatcaccaatg |
18165684 |
T |
|
| Q |
298 |
gccgagtttgttgatttgtcttacaactccttctcaggatcaattccgcatagttggaagaa |
359 |
Q |
| |
|
||| | |||||||||||||||| |||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
18165685 |
gccaattttgttgatttgtctttcaactccttctcaggaacaattccacatagttggaagaa |
18165746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 101 - 430
Target Start/End: Original strand, 19400040 - 19400387
Alignment:
| Q |
101 |
atctcgacttatcgagcgcggtaatttcgttggtagatagaaataagtttacgaatcttatagaaagaata------------------cccagcgaact |
182 |
Q |
| |
|
||||||||||||| ||| ||| ||||||||| ||||||||||||||||| |||||||||||||||||||| |||| ||||| |
|
|
| T |
19400040 |
atctcgacttatcaagctcgggaatttcgtttgtagatagaaataagttctcgaatcttatagaaagaataactgctcctccgcatatacccaatgaact |
19400139 |
T |
|
| Q |
183 |
tattctgtcaaagaattcaatttctgtagacatgtctaacctaacactttcttgttcatggttaagtctggatcacaataatttcacatgtggactccca |
282 |
Q |
| |
|
|||| ||||||| ||||| ||| ||| |||||| |||||||||||||| ||||| | ||||| |||||||||||| ||||||| | |||||||| |
|
|
| T |
19400140 |
tattttgtcaaacaattctattgctgaagacatatctaacctaacactaaattgtttaattttaaggttggatcacaatagtttcacaggaagactccca |
19400239 |
T |
|
| Q |
283 |
aacatatcaccaatggccgagtttgttgatttgtcttacaactccttctcaggatcaattccgcatagttggaagaacttgtcagaacttgaagtcttga |
382 |
Q |
| |
|
|||||||||||||||| | | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| | | |||| | | |
|
|
| T |
19400240 |
aacatatcaccaatggtctatcatgttgatttgtcttacaactttttctcaggatcaattccgcatagttggaagaacttgaatgaagtgggagtcatca |
19400339 |
T |
|
| Q |
383 |
aactgtggagtaataggctgtctggtgaagttctagcacacctctctg |
430 |
Q |
| |
|
| |||||| |||||||||| |||||||||| ||| | ||||||||||| |
|
|
| T |
19400340 |
acctgtggcgtaataggctatctggtgaagctctgggacacctctctg |
19400387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 98 - 368
Target Start/End: Complemental strand, 14896061 - 14895791
Alignment:
| Q |
98 |
aagatctcgacttatcgagcgcggtaatttcgttggtagatagaaataagtttacgaatcttatagaaagaatacccagcgaacttattctgtcaaagaa |
197 |
Q |
| |
|
|||||||||||||||||||| | | ||||||||| || |||||||||||||| ||| ||| ||||||||||||||| ||||||||| || |||| || |
|
|
| T |
14896061 |
aagatctcgacttatcgagctcaggaatttcgtttgtggatagaaataagttctcgagccttgtagaaagaatacccaatgaacttattttgacaaacaa |
14895962 |
T |
|
| Q |
198 |
ttcaatttctgtagacatgtctaacctaacactttcttgttcatggttaagtctggatcacaataatttcacatgtggactcccaaacatatcaccaatg |
297 |
Q |
| |
|
||| ||| ||| |||||| |||||||||||||| ||||| | ||||| |||||||||| ||||||||| | |||||||||||||||||||||||| |
|
|
| T |
14895961 |
ttcgattgctgaagacatatctaacctaacactaaattgtttgtttttaaggttggatcacaacaatttcacaggaggactcccaaacatatcaccaatg |
14895862 |
T |
|
| Q |
298 |
gccgagtttgttgatttgtcttacaactccttctcaggatcaattccgcatagttggaagaacttgtcaga |
368 |
Q |
| |
|
|| ||||||| |||| | |||||||||||||||| |||||| |||||||||||||||||| |||| |
|
|
| T |
14895861 |
accactcatgttgatgtgtcattcaactccttctcaggagaaattccacatagttggaagaacttgacaga |
14895791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 101 - 407
Target Start/End: Original strand, 19351725 - 19352030
Alignment:
| Q |
101 |
atctcgacttatcgagcgcggtaatttcgttggtagatagaaataagtttacgaatcttatagaaagaatacccagcgaacttattctgtcaaagaattc |
200 |
Q |
| |
|
|||||||| |||||||| ||| |||||| |||||||||||||||||||| ||| |||||||||||||||| |||| | ||||||| |||| |
|
|
| T |
19351725 |
atctcgacatatcgagcacgggaatttcattggtagatagaaataagttctcgagccttatagaaagaatactttataaactattattgtcaaacaattt |
19351824 |
T |
|
| Q |
201 |
aatttctgtagacatgtctaacctaacactttcttgttcatggttaagtctggatcacaataatttcacatgtggactcccaaacatatcaccaatggcc |
300 |
Q |
| |
|
||| | | |||||| |||| |||||||||| ||||| |||||| |||||||||||||||||||| | |||||||||||| |||||||| ||| |
|
|
| T |
19351825 |
cattgcggaagacatatcta-cctaacacttaattgtttggagttaaggttggatcacaataatttcacaggaggactcccaaacctatcaccagaggct |
19351923 |
T |
|
| Q |
301 |
gagtttgttgatttgtcttacaactccttctcaggatcaattccgcatagttggaagaacttgtcagaacttgaagtcttgaaactgtggagtaataggc |
400 |
Q |
| |
|
||| | |||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||| |||| ||||||| ||||| | |
|
|
| T |
19351924 |
gagatagttgatttatcttacaactccttctcaagatcaattccacatagttggaagaacttgtcagaactgagagtcatgaacctgtggaataataagt |
19352023 |
T |
|
| Q |
401 |
tgtctgg |
407 |
Q |
| |
|
||||||| |
|
|
| T |
19352024 |
tgtctgg |
19352030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 106 - 430
Target Start/End: Original strand, 17950169 - 17950493
Alignment:
| Q |
106 |
gacttatcgagcgcggtaatttcgttggtagatagaaataagtttacgaatcttatagaaagaatacccagcgaacttattctgtcaaagaattcaattt |
205 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||| ||||||||| ||| |||| |||||| ||| | | ||||| || ||||||| ||||| ||| |
|
|
| T |
17950169 |
gacttatcgagctcgggaatttcgttggtagatacaaataagttctcgagccttacagaaagtatagcttgtcaactttttttgtcaaataattcgattg |
17950268 |
T |
|
| Q |
206 |
ctgtagacatgtctaacctaacactttcttgttcatggttaagtctggatcacaataatttcacatgtggactcccaaacatatcaccaatggccgagtt |
305 |
Q |
| |
|
||| |||||| |||||||| |||| |||| | |||| | || ||||||||||||||||| | |||||||| ||||||||||||||| || | |
|
|
| T |
17950269 |
ctgaagacataactaacctatcactaaattgtaccgagttatatttgcatcacaataatttcacaggaggactcccgaacatatcaccaatgtcctatag |
17950368 |
T |
|
| Q |
306 |
tgttgatttgtcttacaactccttctcaggatcaattccgcatagttggaagaacttgtcagaacttgaagtcttgaaactgtggagtaataggctgtct |
405 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||| | | | | || || |||||||||||||| ||| |
|
|
| T |
17950369 |
agttgatttttcttacaactccttctcaggatcaattccacatagtttaaagaacttgtcagaattacattacattaacctttggagtaataggctatct |
17950468 |
T |
|
| Q |
406 |
ggtgaagttctagcacacctctctg |
430 |
Q |
| |
|
||||||||||||| ||||||||||| |
|
|
| T |
17950469 |
ggtgaagttctaggacacctctctg |
17950493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 101 - 363
Target Start/End: Original strand, 18116297 - 18116559
Alignment:
| Q |
101 |
atctcgacttatcgagcgcggtaatttcgttggtagatagaaataagtttacgaatcttatagaaagaatacccagcgaacttattctgtcaaagaattc |
200 |
Q |
| |
|
|||||||| |||||||||||| |||||| |||||||||||||| ||||| ||| ||||||||||||||||| |||||| | ||||||| ||||| |
|
|
| T |
18116297 |
atctcgacatatcgagcgcgggaatttcattggtagatagaaagaagttcttgaaccttatagaaagaataccggttgaactttatttgtcaaacaattc |
18116396 |
T |
|
| Q |
201 |
aatttctgtagacatgtctaacctaacactttcttgtt-catggttaagtctggatcacaataatttcacatgtggactcccaaacatatcaccaatggc |
299 |
Q |
| |
|
|||| ||| |||||| || |||||| |||| | ||| | |||| ||| ||||||||||||||||||||| | |||||||||||||||| || | || |
|
|
| T |
18116397 |
aattgctgaagacatatcaaacctatcactaattggttacgtggt-aaggctggatcacaataatttcacaggaggactcccaaacatattgtcatttgc |
18116495 |
T |
|
| Q |
300 |
cgagtttgttgatttgtcttacaactccttctcaggatcaattccgcatagttggaagaacttg |
363 |
Q |
| |
|
| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
18116496 |
ctatggaattgatttgtcttacaactccttctcaggatcaattccacatagttggaagaacttg |
18116559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 106 - 430
Target Start/End: Original strand, 18108776 - 18109100
Alignment:
| Q |
106 |
gacttatcgagcgcggtaatttcgttggtagatagaaataagtttacgaatcttatagaaagaatacccagcgaacttattctgtcaaagaattcaattt |
205 |
Q |
| |
|
|||||||||||| || ||||||||||||||||| ||||||||| || ||||||||||| ||| | | ||||| || ||||||| ||||| ||| |
|
|
| T |
18108776 |
gacttatcgagctcgtgaatttcgttggtagatacaaataagttcttgagccttatagaaagtatagcaactcaactttttttgtcaaataattcgattg |
18108875 |
T |
|
| Q |
206 |
ctgtagacatgtctaacctaacactttcttgttcatggttaagtctggatcacaataatttcacatgtggactcccaaacatatcaccaatggccgagtt |
305 |
Q |
| |
|
||| |||||| ||||||||| |||| |||| | |||| | || |||| |||||||||||| | |||||| | ||||||||||||||| || | |
|
|
| T |
18108876 |
ctgaagacatatctaacctatcactaaattgtaccgagttatatttgcatcataataatttcacaggaggactctcgaacatatcaccaatgtcctatag |
18108975 |
T |
|
| Q |
306 |
tgttgatttgtcttacaactccttctcaggatcaattccgcatagttggaagaacttgtcagaacttgaagtcttgaaactgtggagtaataggctgtct |
405 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| || | | | | || || |||||||||||||| ||| |
|
|
| T |
18108976 |
agttgatttttcttacaactccttctcaggatcaattcatcatagttggaagaacttgtcataattacattacattaacctttggagtaataggctatct |
18109075 |
T |
|
| Q |
406 |
ggtgaagttctagcacacctctctg |
430 |
Q |
| |
|
||||||||||||| ||||||||||| |
|
|
| T |
18109076 |
ggtgaagttctaggacacctctctg |
18109100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 102 - 404
Target Start/End: Original strand, 18103679 - 18103981
Alignment:
| Q |
102 |
tctcgacttatcgagcgcggtaatttcgttggtagatagaaataagtttacgaatcttatagaaagaatacccagcgaacttattctgtcaaagaattca |
201 |
Q |
| |
|
||||||| ||| |||| ||| ||||||||| ||||||||||| ||||| | | ||||| ||||||||| || || || || ||||||| |||| |
|
|
| T |
18103679 |
tctcgacatattgagctcgggaatttcgtttgtagatagaaagaagttctctagccttatcgaaagaatatcctttcaaattcttttgtcaaacaatttg |
18103778 |
T |
|
| Q |
202 |
atttctgtagacatgtctaacctaacactttcttgttcatggttaagtctggatcacaataatttcacatgtggactcccaaacatatcaccaatggccg |
301 |
Q |
| |
|
|||| || ||| || ||||| |||||||| ||||| | |||||| |||||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
18103779 |
atttttgaagatatatctaagctaacactaaattgtttgtttttaagtgtggatcacaataatttcacaggaggactcccaaacatatcaccaatggcc- |
18103877 |
T |
|
| Q |
302 |
agtttg---ttgatttgtcttacaactccttctcaggatcaattccgcatagttggaagaacttgtcagaacttgaagtcttgaaactgtggagtaatag |
398 |
Q |
| |
|
|||| | ||||||||||||||||||||||||||| ||||||| ||||||||||||||| || |||||| |||| |||| |||||||||||||| |
|
|
| T |
18103878 |
--tttgaaatcgatttgtcttacaactccttctcaggaacaattcctcatagttggaagaacatgaaagaactgagagtcatgaatctgtggagtaatag |
18103975 |
T |
|
| Q |
399 |
gctgtc |
404 |
Q |
| |
|
| |||| |
|
|
| T |
18103976 |
gttgtc |
18103981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 178 - 363
Target Start/End: Original strand, 16677619 - 16677804
Alignment:
| Q |
178 |
gaacttattctgtcaaagaattcaatttctgtagacatgtctaacctaacactttcttgttcatggttaagtctggatcacaataatttcacatgtggac |
277 |
Q |
| |
|
|||||| || ||||||| ||||| |||| | |||||| |||||||||||| | ||||||||||||| | ||||||| |||||||||||| | |||| |
|
|
| T |
16677619 |
gaacttcttttgtcaaacaattccattttcgaagacatatctaacctaacattaaattgttcatggttagggttggatcataataatttcacaggaggac |
16677718 |
T |
|
| Q |
278 |
tcccaaacatatcaccaa-tggccgagtttgttgatttgtcttacaactccttctcaggatcaattccgcatagttggaagaacttg |
363 |
Q |
| |
|
|||| ||||||||||||| || ||||| | |||||||||||||||||||||||||| ||| |||||| |||||||||||||||||| |
|
|
| T |
16677719 |
tcccgaacatatcaccaattgcccgag-tagttgatttgtcttacaactccttctcgggaataattccacatagttggaagaacttg |
16677804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 102 - 363
Target Start/End: Original strand, 19425020 - 19425281
Alignment:
| Q |
102 |
tctcgacttatcgagcgcggtaatttcgttggtagatagaaataagtttacgaatcttatagaaagaatacccagcgaacttattctgtcaaagaattca |
201 |
Q |
| |
|
|||||||||||||||| ||| |||||| |||||| ||||||||||||| ||| ||| ||||||||||| | | |||||| ||||||| |||| |
|
|
| T |
19425020 |
tctcgacttatcgagctcgggaatttcattggtacatagaaataagttctcgagccttgtagaaagaataacagatcaccttattttgtcaaacaatttg |
19425119 |
T |
|
| Q |
202 |
atttctgtagacatgtctaacctaacactttcttgttcatggttaagtctggatcacaataatttcacatgtggactcccaaacatatcaccaatggccg |
301 |
Q |
| |
|
||| ||| |||||| || ||||||||||| |||||| ||| | ||||| |||||||||||||| | |||||||| ||||||| | ||||||| |
|
|
| T |
19425120 |
attgctgaagacatatccaacctaacactaaattgttccaatttaggattggataacaataatttcacaggaggactcccgaacatattaacaatggctt |
19425219 |
T |
|
| Q |
302 |
agtttgttgatttgtcttacaactccttctcaggatcaattccgcatagttggaagaacttg |
363 |
Q |
| |
|
| |||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
19425220 |
atgcagttgatttgtcttacaactcattctcgggatcaattccacatagttggaagaacttg |
19425281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 98 - 362
Target Start/End: Original strand, 19464685 - 19464949
Alignment:
| Q |
98 |
aagatctcgacttatcgagcgcggtaatttcgttggtagatagaaataagtttacgaatcttatagaaagaatacccagcgaacttattctgtcaaagaa |
197 |
Q |
| |
|
|||| ||||||||||||| | | | ||||| ||||||||||| || ||| ||| | | ||||||||||||||| || |||||| || | ||||| || |
|
|
| T |
19464685 |
aagaactcgacttatcgatctccgcaattttgttggtagataaaagtaacttttcaatccttatagaaagaatatcctatgaactttttttatcaaacaa |
19464784 |
T |
|
| Q |
198 |
ttcaatttctgtagacatgtctaacctaacactttcttgttcatggttaagtctggatcacaataatttcacatgtggactcccaaacatatcaccaatg |
297 |
Q |
| |
|
|| ||| ||| ||||| |||||||||||||| |||||| | ||| ||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
19464785 |
tttgattgctgctgacatatctaacctaacactaaattgttcctcattattcttggatcacaataatttcactggaggactcccaaacatatcaccaatg |
19464884 |
T |
|
| Q |
298 |
gccgagtttgttgatttgtcttacaactccttctcaggatcaattccgcatagttggaagaactt |
362 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
19464885 |
gcttttagagttgatttgtcttacaactccttctcaggaacaattccatatagttggaagaactt |
19464949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 308 - 363
Target Start/End: Original strand, 19461726 - 19461781
Alignment:
| Q |
308 |
ttgatttgtcttacaactccttctcaggatcaattccgcatagttggaagaacttg |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
19461726 |
ttgatttgtcttacaactccttctcaggatcaattccacatagttggaagaacttg |
19461781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 310 - 361
Target Start/End: Original strand, 19354256 - 19354307
Alignment:
| Q |
310 |
gatttgtcttacaactccttctcaggatcaattccgcatagttggaagaact |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
19354256 |
gatttgtcttacaactccttctcaggatcaattccacatagttggaagaact |
19354307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 363
Target Start/End: Original strand, 19439183 - 19439239
Alignment:
| Q |
307 |
gttgatttgtcttacaactccttctcaggatcaattccgcatagttggaagaacttg |
363 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||| ||| ||||| ||||||| |
|
|
| T |
19439183 |
gttgatttgtcttacaactccgtctcaagatcaattccatataattggaggaacttg |
19439239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 98; Significance: 5e-48; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 98 - 430
Target Start/End: Original strand, 5732 - 6064
Alignment:
| Q |
98 |
aagatctcgacttatcgagcgcggtaatttcgttggtagatagaaataagtttacgaatcttatagaaagaatacccagcgaacttattctgtcaaagaa |
197 |
Q |
| |
|
|||||||| | ||||| ||| | | |||||| |||||||||||||||||||| ||| ||||||||||| || ||| ||||||| | ||||||| || |
|
|
| T |
5732 |
aagatctctatttatccagctctggaatttcattggtagatagaaataagttctcgagccttatagaaagcgtatccaatgaacttaatttgtcaaacaa |
5831 |
T |
|
| Q |
198 |
ttcaatttctgtagacatgtctaacctaacactttcttgttcatggttaagtctggatcacaataatttcacatgtggactcccaaacatatcaccaatg |
297 |
Q |
| |
|
||| ||| ||| |||||| |||||||||||||| ||||| | |||| |||||||||||||||||| | |||||||||||||||||| ||||| |
|
|
| T |
5832 |
ttcgattgctgaagacatatctaacctaacactaaattgtttctttctaaggttggatcacaataatttcaagggaggactcccaaacatatcatcaatg |
5931 |
T |
|
| Q |
298 |
gccgagtttgttgatttgtcttacaactccttctcaggatcaattccgcatagttggaagaacttgtcagaacttgaagt-cttgaaactgtggagtaat |
396 |
Q |
| |
|
||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| || | | | | | ||||||||||| |
|
|
| T |
5932 |
gccttaatagttgatttgtcttacaactccttctcaggatcaattccacatagttggaagaacttgttagaa-ttaacttacattatcttgtggagtaat |
6030 |
T |
|
| Q |
397 |
aggctgtctggtgaagttctagcacacctctctg |
430 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||| |
|
|
| T |
6031 |
aagctgtctggtgaagttctaggacacctctctg |
6064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 98; Significance: 5e-48; HSPs: 1)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 98 - 430
Target Start/End: Complemental strand, 3244 - 2912
Alignment:
| Q |
98 |
aagatctcgacttatcgagcgcggtaatttcgttggtagatagaaataagtttacgaatcttatagaaagaatacccagcgaacttattctgtcaaagaa |
197 |
Q |
| |
|
|||||||| | ||||| ||| | | |||||| |||||||||||||||||||| ||| ||||||||||| || ||| ||||||| | ||||||| || |
|
|
| T |
3244 |
aagatctctatttatccagctctggaatttcattggtagatagaaataagttctcgagccttatagaaagcgtatccaatgaacttaatttgtcaaacaa |
3145 |
T |
|
| Q |
198 |
ttcaatttctgtagacatgtctaacctaacactttcttgttcatggttaagtctggatcacaataatttcacatgtggactcccaaacatatcaccaatg |
297 |
Q |
| |
|
||| ||| ||| |||||| |||||||||||||| ||||| | |||| |||||||||||||||||| | |||||||||||||||||| ||||| |
|
|
| T |
3144 |
ttcgattgctgaagacatatctaacctaacactaaattgtttctttctaaggttggatcacaataatttcaagggaggactcccaaacatatcatcaatg |
3045 |
T |
|
| Q |
298 |
gccgagtttgttgatttgtcttacaactccttctcaggatcaattccgcatagttggaagaacttgtcagaacttgaagt-cttgaaactgtggagtaat |
396 |
Q |
| |
|
||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| || | | | | | ||||||||||| |
|
|
| T |
3044 |
gccttaatagttgatttgtcttacaactccttctcaggatcaattccacatagttggaagaacttgttagaa-ttaacttacattatcttgtggagtaat |
2946 |
T |
|
| Q |
397 |
aggctgtctggtgaagttctagcacacctctctg |
430 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||| |
|
|
| T |
2945 |
aagctgtctggtgaagttctaggacacctctctg |
2912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 98 - 430
Target Start/End: Complemental strand, 3775 - 3443
Alignment:
| Q |
98 |
aagatctcgacttatcgagcgcggtaatttcgttggtagatagaaataagtttacgaatcttatagaaagaatacccagcgaacttattctgtcaaagaa |
197 |
Q |
| |
|
|||||||| | ||||| ||| | | |||||| |||||||||||||||||||| ||| ||||||||||| || || ||||||| | ||||||| || |
|
|
| T |
3775 |
aagatctctatttatccagctctggaatttcattggtagatagaaataagttctcgagccttatagaaagcgtatccgatgaacttaatttgtcaaacaa |
3676 |
T |
|
| Q |
198 |
ttcaatttctgtagacatgtctaacctaacactttcttgttcatggttaagtctggatcacaataatttcacatgtggactcccaaacatatcaccaatg |
297 |
Q |
| |
|
||| ||| ||| |||||| |||||||||||||| ||||| | |||| |||||||||||||||||| | |||||||||||||||||| ||||| |
|
|
| T |
3675 |
ttcgattgctgaagacatatctaacctaacactaaattgtttctttctaaggttggatcacaataatttcaagggaggactcccaaacatatcatcaatg |
3576 |
T |
|
| Q |
298 |
gccgagtttgttgatttgtcttacaactccttctcaggatcaattccgcatagttggaagaacttgtcagaacttgaagt-cttgaaactgtggagtaat |
396 |
Q |
| |
|
||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| || | | | | | ||||||||||| |
|
|
| T |
3575 |
gccttaatagttgatttgtcttacaactccttctcaggatcaattccacatagttggaagaacttgttagaa-ttaacttacattatcttgtggagtaat |
3477 |
T |
|
| Q |
397 |
aggctgtctggtgaagttctagcacacctctctg |
430 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||| |
|
|
| T |
3476 |
aagctgtctggtgaagttctaggacacctctctg |
3443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 188 - 407
Target Start/End: Complemental strand, 13666531 - 13666312
Alignment:
| Q |
188 |
tgtcaaagaattcaatttctgtagacatgtctaacctaacactttcttgttcatggttaagtctggatcacaataatttcacatgtggactcccaaacat |
287 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||| ||||| | ||||| ||||| ||||||||||||| |||||| | |||||||||||||| |
|
|
| T |
13666531 |
tgtcaaagaattcaatttctgaagacatatctaacttaacaatgaattgtttcgacttaaggttggatcacaataacttcacaggaggactcccaaacat |
13666432 |
T |
|
| Q |
288 |
atcaccaatggccgagtttgttgatttgtcttacaactccttctcaggatcaattccgcatagttggaagaacttgtcagaacttgaagtcttgaaactg |
387 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||| ||||||||||||||||| || ||||||| ||||||| |||||| | ||| || | ||| |
|
|
| T |
13666431 |
atcaccaatggccgctataattgatttgtcttacaactctttctcaggatcaattccacacagttggatgaacttgaaagaactgggtgtcctggacctg |
13666332 |
T |
|
| Q |
388 |
tggagtaataggctgtctgg |
407 |
Q |
| |
|
||||||||| || ||||||| |
|
|
| T |
13666331 |
tggagtaatgggttgtctgg |
13666312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 102 - 432
Target Start/End: Original strand, 15535866 - 15536196
Alignment:
| Q |
102 |
tctcgacttatcgagcgcggtaatttcgttggtagatagaaataagtttacgaatcttatagaaagaatacccagcgaacttattctgtcaaagaattca |
201 |
Q |
| |
|
|||||||||||||||| ||| |||||| || ||||| ||| ||||||| | || ||||| ||||||||||| ||||| || ||||||| |||| |
|
|
| T |
15535866 |
tctcgacttatcgagctcgggaatttcattagtagacagagataagttctcaaaccttattaaaagaatacccgataaactttttttgtcaaacaatttc |
15535965 |
T |
|
| Q |
202 |
atttctgtagacatgtctaacctaacactttcttgttcatggttaagtctggatcacaataatttcacatgtggactcccaaacatatcaccaatggccg |
301 |
Q |
| |
|
||| ||| |||||| |||||||||||| || | ||| |||||| |||| |||||||||| ||| | |||||||||||||||||||||| || | |
|
|
| T |
15535966 |
attgctgaagacatatctaacctaacagttaatggtttggagttaaggttggaccacaataattatacaggaggactcccaaacatatcaccaagggttg |
15536065 |
T |
|
| Q |
302 |
agtttgttgatttgtcttacaactccttctcaggatcaattccgcatagttggaagaacttgtcagaacttga-agtcttgaaactgtggagtaataggc |
400 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||| |||| |||| ||||||| |||||| |
|
|
| T |
15536066 |
ttatggttgatttttcttacaactccttctcaggatcaattccacatagttggaagaacttgaatgaa-ttgacagtcatgaacctgtggaataatagtt |
15536164 |
T |
|
| Q |
401 |
tgtctggtgaagttctagcacacctctctgct |
432 |
Q |
| |
|
||||||||||||||| | |||||||||||| |
|
|
| T |
15536165 |
tgtctggtgaagttccaatgcacctctctgct |
15536196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 251 - 363
Target Start/End: Complemental strand, 2710097 - 2709985
Alignment:
| Q |
251 |
tggatcacaataatttcacatgtggactcccaaacatatcaccaatggccgagtttgttgatttgtcttacaactccttctcaggatcaattccgcatag |
350 |
Q |
| |
|
|||| ||||||||||| ||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2710097 |
tggaccacaataattttacaggaggactcccaaacatatcaccaatggcacttgaagttgatttgtcttacaactccttctcaggatcaattccacatag |
2709998 |
T |
|
| Q |
351 |
ttggaagaacttg |
363 |
Q |
| |
|
||||||||||||| |
|
|
| T |
2709997 |
ttggaagaacttg |
2709985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 250 - 355
Target Start/End: Original strand, 8460026 - 8460131
Alignment:
| Q |
250 |
ctggatcacaataatttcacatgtggactcccaaacatatcaccaatggccgagtttgttgatttgtcttacaactccttctcaggatcaattccgcata |
349 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||| | | | || | |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8460026 |
ctggatcacaataatttcacaggaggactcccaaacatatcagtagggactgacctagttgatttgtcttacaactccttctcaggatcaattccacata |
8460125 |
T |
|
| Q |
350 |
gttgga |
355 |
Q |
| |
|
||||| |
|
|
| T |
8460126 |
tttgga |
8460131 |
T |
|
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