View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1336_low_9 (Length: 418)
Name: NF1336_low_9
Description: NF1336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1336_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 74 - 415
Target Start/End: Complemental strand, 11085901 - 11085556
Alignment:
| Q |
74 |
tcacgcttcttgaggatttcccggcgtgcatgttatgttgtatacaagaacaaacgtacaacaaaagaaataaaataactattagtatgttattagtgtt |
173 |
Q |
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| T |
11085901 |
tcacgcttcttgaggatttcccggcgtgcatgttatgttgtatacaagaacaaacgtacaacaaaagaaataaaataactattagtatgttattagtgtt |
11085802 |
T |
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| Q |
174 |
taattaatgtgtcttttataggcaagtggggatttgaccctttattattctattaatttatagtcattttct---gatggtgacatgcaagatcacatag |
270 |
Q |
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| T |
11085801 |
taattaatgtgtcttttataggcaagtggggatttgaccctttattattctattaatttatagtcattttctgatgatggtgacatgcaagatcacatag |
11085702 |
T |
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| Q |
271 |
ccttaagtcatgtgtatgttaattaagctggtagaagtttgactatacttgtatctaaatgcataaatataatataacaacatagagtttaatggatgct |
370 |
Q |
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| T |
11085701 |
cctcaagtcatgtgtatgttaattaagctggtagaagtttgactatacttgtatctaaatgcataaatataatataacaacatagagtttaatggatgct |
11085602 |
T |
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| Q |
371 |
annnnnnncagagttccctccacttgatgtaa-tattattcgacat |
415 |
Q |
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| T |
11085601 |
atttttttcagagttccctccacttgatgtaatttttattcgacat |
11085556 |
T |
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