View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13370_high_3 (Length: 241)
Name: NF13370_high_3
Description: NF13370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13370_high_3 |
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| [»] scaffold0341 (2 HSPs) |
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Alignment Details
Target: scaffold0341 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 736 - 538
Alignment:
| Q |
1 |
ctgatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaatgggtataggtggtagatttct |
100 |
Q |
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| T |
736 |
ctgatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaataggtataggtggtagatttct |
637 |
T |
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| Q |
101 |
tagacccagttgttatttgagatatgaaaccaattcacttttctatcaacaaacacaagattcaccttcatcatcgtcgtcatcatcaccatcaccaaca |
200 |
Q |
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| T |
636 |
tagacccagttgttatttgagatatgaaaccaattcacttttctatcaacaaactcaagattcaccttcatcat---cgtcatcatcaccatcaccaaca |
540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 8389 - 8191
Alignment:
| Q |
1 |
ctgatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaatgggtataggtggtagatttct |
100 |
Q |
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| T |
8389 |
ctgatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaataggtataggtggtagatttct |
8290 |
T |
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| Q |
101 |
tagacccagttgttatttgagatatgaaaccaattcacttttctatcaacaaacacaagattcaccttcatcatcgtcgtcatcatcaccatcaccaaca |
200 |
Q |
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| T |
8289 |
tagacccagttgttatttgagatatgaaaccaattcacttttctatcaacaaactcaagattcaccttcatcat---cgtcatcatcaccatcaccaaca |
8193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 6506711 - 6506513
Alignment:
| Q |
1 |
ctgatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaatgggtataggtggtagatttct |
100 |
Q |
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| T |
6506711 |
ctgatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaataggtataggtggtagatttct |
6506612 |
T |
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| Q |
101 |
tagacccagttgttatttgagatatgaaaccaattcacttttctatcaacaaacacaagattcaccttcatcatcgtcgtcatcatcaccatcaccaaca |
200 |
Q |
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| T |
6506611 |
tagacccagttgttatttgagatatgaaaccaattcacttttctatcaacaaactcaagattcaccttcatcat---cgtcatcatcaccatcaccaaca |
6506515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 6522018 - 6522161
Alignment:
| Q |
1 |
ctgatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaatgggtataggtggtagatttct |
100 |
Q |
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| T |
6522018 |
ctgatttgtctaaaacattatgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgtaacaata-----ggt-taggtgctagaattgt |
6522111 |
T |
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| Q |
101 |
tagacccagttgttatttgagatatgaaaccaattcacttttctatcaac |
150 |
Q |
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| T |
6522112 |
tagacccagttgtaatttgagatatgaaaccaattcattcttctatcaac |
6522161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 6512618 - 6512451
Alignment:
| Q |
1 |
ctgatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaatgggtataggtggtagatttct |
100 |
Q |
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| T |
6512618 |
ctgatttgtctaaatcattgtgcgatgattgtttggtaaaatctatcaaagcaatcccaagatgttgtaacaacaggttgggt------gctagaattgt |
6512525 |
T |
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| Q |
101 |
tagacccagttgttatttgagatatgaaaccaattcacttttctatcaacaaacacaagattcaccttcatcat |
174 |
Q |
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| T |
6512524 |
tagaccaagttgttatttgagatatgaaaccgattcactcttctatcaacaaacaccagatccaccctcatcat |
6512451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 6517017 - 6516855
Alignment:
| Q |
1 |
ctgatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaatgggtataggtggtagatttct |
100 |
Q |
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||||||||| | ||||||| |||||||| ||||||| | |||||||||| |||||| ||| |||||| |||| || ||| || | |||| || | |
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| T |
6517017 |
ctgatttgtttaaaacattttgtgatgattgtttggttcaatctatcaatgaaatcgcaatatgttgtaacaacaggatgagt------gctagagttgt |
6516924 |
T |
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| Q |
101 |
tagacccagttgttatttgagatatgaaaccaattcacttttctatcaacaaacacaagattcaccttc |
169 |
Q |
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| T |
6516923 |
tagacccagttgttatttgagatatgaaaccgattcactcttttatcaaccaacacaagattcaccttc |
6516855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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