View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13370_low_1 (Length: 730)
Name: NF13370_low_1
Description: NF13370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13370_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 675; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 675; E-Value: 0
Query Start/End: Original strand, 1 - 711
Target Start/End: Original strand, 29308131 - 29308841
Alignment:
| Q |
1 |
tgctatcacactcatcaatgaaatcaaacccgatgccgttattgttcaatcaggtggtagtgtctccccttttgaagatgatggtaaagatgatattttg |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
29308131 |
tgctatcacactcatcaatgaaatcaaacctgatgctgttattgttcaatcaggtggtagtctctccccttttgaagatgatgataaagatgatattttg |
29308230 |
T |
|
| Q |
101 |
gtacctacttcttcttttggtgttattaaacgttgttttgttgataaaattggtcgagatagatatgagactgttgctggcgattttgttcttaaggaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
29308231 |
gtacctacttcttcttttggtgttattaaacgttgttttgttgataaaattggtagagatagatatgagactgttgctggtgattttgttcttaaggaga |
29308330 |
T |
|
| Q |
201 |
tttttggtactgggttttatggtactgttttagctgctaaaaaagctgctaaatttgttggttctgagtttattcttgttcaatcaccgttaggtaattc |
300 |
Q |
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| T |
29308331 |
tttttggtactgggttttatggtcctgttttagctgctaaaaaagctgctaaatttgttggttctgagtttattcttgttcaatcaccgttaggtaattc |
29308430 |
T |
|
| Q |
301 |
gtgtttcagtagcaataacaataataatgagaaacatggtagtagtgataataattctagtgcaattgttgatgctggaaaccgttttataactattgtg |
400 |
Q |
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| T |
29308431 |
gtgtttcagtagcaataacaataataatgagaaacatggtagtagtgataataattctagtgcaattgttgatgctggaaaccgttttacaactattgtg |
29308530 |
T |
|
| Q |
401 |
aatagtttggttcctcagcagcaagttgcttcgattggtttgaagaggttttcgatgaataaagatgttaggatggtgttggcagagggtttatctagct |
500 |
Q |
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| T |
29308531 |
aatagtttggttcctcagcagcaagttgcttcgattggtttgaagaggttttcgatgaataaagatgttaggatggtgttggcagagggtttatctagct |
29308630 |
T |
|
| Q |
501 |
atatggatccacttttgattggtagtactaaaaatgagtctgtttcggaggtgggttcggttgaaattcaaccgaaaactagttacgatacacctgcatt |
600 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29308631 |
atatggatccacttttgattggtagtactaaaaatgagtctgtttcggaggtgggttcggttgaaattcaaccgaaaactagttacgatacacctgcatt |
29308730 |
T |
|
| Q |
601 |
tgcaaagtcgatttatccattgcttgaggatttgcatgatatgttttctgatttaccgtcgatggggaaggcgttgggtcatgtgcagaagatgttgttg |
700 |
Q |
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| T |
29308731 |
tgcaaagtcgatttatccattgcttgaggatttgcatgatatgttttctgatttaccgtcgatggggaaggcgttgggtcatgtacagaagatgttgttg |
29308830 |
T |
|
| Q |
701 |
gatgtgaatag |
711 |
Q |
| |
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||||||||||| |
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| T |
29308831 |
gatgtgaatag |
29308841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 500 - 711
Target Start/End: Original strand, 29314694 - 29314905
Alignment:
| Q |
500 |
tatatggatccacttttgattggtagtactaaaaatgagtctgtttcggaggtgggttcggttgaaattcaaccgaaaactagttacgatacacctgcat |
599 |
Q |
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|
||||||||||||||||||||||||| || | ||||||||||||||||||||| |||||||||||||||||| || | ||||||||| ||| | ||||||| |
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| T |
29314694 |
tatatggatccacttttgattggtaatagtgaaaatgagtctgtttcggaggcgggttcggttgaaattcagccaacaactagttatgatgctcctgcat |
29314793 |
T |
|
| Q |
600 |
ttgcaaagtcgatttatccattgcttgaggatttgcatgatatgttttctgatttaccgtcgatggggaaggcgttgggtcatgtgcagaagatgttgtt |
699 |
Q |
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||||| |||| || ||||| ||||||||| | |||||||| || ||||| ||||||||||||||||||| ||||| | ||| ||||||||||||| | |
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| T |
29314794 |
ttgcacagtctatatatcctttgcttgagcaattgcatgaaatattttcgtatttaccgtcgatggggaatgcgttagcacattcgcagaagatgttgat |
29314893 |
T |
|
| Q |
700 |
ggatgtgaatag |
711 |
Q |
| |
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|||||||||||| |
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| T |
29314894 |
ggatgtgaatag |
29314905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 100 - 293
Target Start/End: Original strand, 29314387 - 29314580
Alignment:
| Q |
100 |
ggtacctacttcttcttttggtgttattaaacgttgttttgttgataaaattggtcgagatagatatgagactgttgctggcgattttgttcttaaggag |
199 |
Q |
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|||||||||||||| |||||||||||| ||| | ||||| ||||||||||||||| ||||| ||||||| ||||||||| ||||||||||||| |||| |
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| T |
29314387 |
ggtacctacttctttttttggtgttatcaaaaggtgtttcgttgataaaattggtagagatgagtatgagaatgttgctggtgattttgttcttagggag |
29314486 |
T |
|
| Q |
200 |
atttttggtactgggttttatggtactgttttagctgctaaaaaagctgctaaatttgttggttctgagtttattcttgttcaatcaccgttag |
293 |
Q |
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| T |
29314487 |
atttttggtactggctataatggtcatattttggctgccaaaaaggctgccaaagatgttggttcggagtttattgttcttctatcacctttag |
29314580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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