View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13370_low_5 (Length: 224)

Name: NF13370_low_5
Description: NF13370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13370_low_5
NF13370_low_5
[»] chr6 (16 HSPs)
chr6 (3-177)||(26146631-26146806)
chr6 (3-171)||(25514471-25514640)
chr6 (24-144)||(25986809-25986929)
chr6 (67-176)||(26061314-26061425)
chr6 (67-176)||(26081284-26081395)
chr6 (82-176)||(25548535-25548628)
chr6 (67-143)||(25488066-25488142)
chr6 (3-70)||(26059669-26059736)
chr6 (3-70)||(26079639-26079706)
chr6 (27-72)||(27661862-27661907)
chr6 (24-70)||(25487043-25487087)
chr6 (30-69)||(27703204-27703243)
chr6 (173-207)||(25548656-25548690)
chr6 (173-207)||(26146828-26146862)
chr6 (30-69)||(26852473-26852512)
chr6 (27-68)||(27079147-27079188)
[»] chr2 (1 HSPs)
chr2 (110-177)||(17988740-17988807)


Alignment Details
Target: chr6 (Bit Score: 164; Significance: 8e-88; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 3 - 177
Target Start/End: Original strand, 26146631 - 26146806
Alignment:
Q  3 ttgtgctttgttgtatatactttgtataaatgttgattaatttctgtatatagtcagttacaaattcattactgtacgtttggaggcatgcattagatta 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26146631 ttgtgctttgttgtatatactttgtataaatgttgattaatttctgtatatagtcagttacaaattcattactgtacgtttggagacatgcattagatta 26146730  T
Q  103 tagaatgaataccattttagaagtacatgtaaatt-atggaggccaacctcggataatgtatttgaatgttttatg 177  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26146731 tagaatgaataccattttagaagtacatgtaaattcatggaggccaacctcggataatgtatttgaatgttttatg 26146806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 3 - 171
Target Start/End: Original strand, 25514471 - 25514640
Alignment:
Q  3 ttgtgctttgttgtatatactttgtataaatgttgattaatttctgtatatagtcagttacaaattcattactgtacgtttggaggcatgcattagatta 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25514471 ttgtgctttgttgtatatactttgtataaatgttgattaatttctgtatatagtcagttacaaattcattactgtacgtttggaggcatgcattagatta 25514570  T
Q  103 tagaatgaataccattttagaagtacatgtaaatt-atggaggccaacctcggataatgtatttgaatgt 171  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  25514571 tagaatgaataccattttagaagtacatgtaaattcatggaggccaacctcggataatgtattttaatgt 25514640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 24 - 144
Target Start/End: Original strand, 25986809 - 25986929
Alignment:
Q  24 ttgtataaatgttgattaatttctgtatatagtcagttacaaattcattactgtacgtttggaggcatgcattagattatagaatgaataccattttaga 123  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25986809 ttgtataaatgttgattaatttctgtatatagtccgttacaaattcattactgtacgtttggaggcatgcattagattatagaatgaataccattttaga 25986908  T
Q  124 agtacatgtaaattatggagg 144  Q
    |||||||||||||||||||||    
T  25986909 agtacatgtaaattatggagg 25986929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 67 - 176
Target Start/End: Original strand, 26061314 - 26061425
Alignment:
Q  67 ttcattactgtacgtttggaggcatgcattagattatagaatgaataccattttagaagtacatgtaaattatggaggccaacctcggataatg--tatt 164  Q
    ||||||||||||| ||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||  ||||    
T  26061314 ttcattactgtacatttagatgcatgcattagattatagaatgaacaccattttagaagtacatgtaaattatggaggccaaccttggataatgtatatt 26061413  T
Q  165 tgaatgttttat 176  Q
    ||||||||||||    
T  26061414 tgaatgttttat 26061425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 67 - 176
Target Start/End: Original strand, 26081284 - 26081395
Alignment:
Q  67 ttcattactgtacgtttggaggcatgcattagattatagaatgaataccattttagaagtacatgtaaattatggaggccaacctcggataatg--tatt 164  Q
    ||||||||||||| ||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||  ||||    
T  26081284 ttcattactgtacatttagatgcatgcattagattatagaatgaacaccattttagaagtacatgtaaattatggaggccaaccttggataatgtatatt 26081383  T
Q  165 tgaatgttttat 176  Q
    ||||||||||||    
T  26081384 tgaatgttttat 26081395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 82 - 176
Target Start/End: Original strand, 25548535 - 25548628
Alignment:
Q  82 ttggaggcatgcattagattatagaatgaataccattttagaagtacatgtaaattatggaggccaacctcggataatgtatttgaatgttttat 176  Q
    ||||||||||||||||||||  | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  25548535 ttggaggcatgcattagatttga-aatgaataccattttagaagtacatgtaaaatatggaggccaacctcggataatgtatttgaatgttttat 25548628  T

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Target: chr6; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 67 - 143
Target Start/End: Original strand, 25488066 - 25488142
Alignment:
Q  67 ttcattactgtacgtttggaggcatgcattagattatagaatgaataccattttagaagtacatgtaaattatggag 143  Q
    ||||||||||||| ||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  25488066 ttcattactgtacatttagatgcatgcattagattatagaatgaacaccattttagaagtacatgtaaattatggag 25488142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 26059669 - 26059736
Alignment:
Q  3 ttgtgctttgttgtatatactttgtataaatgttgattaatttctgtatatagtcagttacaaattca 70  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26059669 ttgtgctttgatgtttatactttgtataaatgttgattaatttctgtatgtagtcagttacaaattca 26059736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 26079639 - 26079706
Alignment:
Q  3 ttgtgctttgttgtatatactttgtataaatgttgattaatttctgtatatagtcagttacaaattca 70  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26079639 ttgtgctttgatgtttatactttgtataaatgttgattaatttctgtatgtagtcagttacaaattca 26079706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 27661907 - 27661862
Alignment:
Q  27 tataaatgttgattaatttctgtatatagtcagttacaaattcatt 72  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||    
T  27661907 tataaatattgattaatttctgtatatagtcaattacaaattcatt 27661862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 25487043 - 25487087
Alignment:
Q  24 ttgtataaatgttgattaatttctgtatatagtcagttacaaattca 70  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||    
T  25487043 ttgtataaatgttga--aatttctgtatatagtcagttacaaattca 25487087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 69
Target Start/End: Complemental strand, 27703243 - 27703204
Alignment:
Q  30 aaatgttgattaatttctgtatatagtcagttacaaattc 69  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  27703243 aaatgttgattaatttctgtatatagtcaattacaaattc 27703204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 25548656 - 25548690
Alignment:
Q  173 ttatgaaaaagtagtttttatatggtgttttagtt 207  Q
    |||||||||||||||||||||||||||||||||||    
T  25548656 ttatgaaaaagtagtttttatatggtgttttagtt 25548690  T

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Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 26146828 - 26146862
Alignment:
Q  173 ttatgaaaaagtagtttttatatggtgttttagtt 207  Q
    |||||||||||||||||||||||||||||||||||    
T  26146828 ttatgaaaaagtagtttttatatggtgttttagtt 26146862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 69
Target Start/End: Original strand, 26852473 - 26852512
Alignment:
Q  30 aaatgttgattaatttctgtatatagtcagttacaaattc 69  Q
    ||||||||||||||||||||||||||||| || |||||||    
T  26852473 aaatgttgattaatttctgtatatagtcaattgcaaattc 26852512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 27079147 - 27079188
Alignment:
Q  27 tataaatgttgattaatttctgtatatagtcagttacaaatt 68  Q
    |||||| ||||||||||||||||||||| ||| |||||||||    
T  27079147 tataaacgttgattaatttctgtatatattcaattacaaatt 27079188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 110 - 177
Target Start/End: Complemental strand, 17988807 - 17988740
Alignment:
Q  110 aataccattttagaagtacatgtaaattatggaggccaacctcggataatgtatttgaatgttttatg 177  Q
    ||||||||| ||||||| |||||||||| ||||||||||| | |||||||||||||||| ||||||||    
T  17988807 aataccattgtagaagttcatgtaaattctggaggccaactttggataatgtatttgaacgttttatg 17988740  T

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