View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13371_low_1 (Length: 540)
Name: NF13371_low_1
Description: NF13371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13371_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 260 - 513
Target Start/End: Original strand, 37528949 - 37529202
Alignment:
| Q |
260 |
ggttatttgactgtataatagtactatactatagtattttagattagaattaannnnnnngcataaataaaagttatatagattagattaggattagata |
359 |
Q |
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| T |
37528949 |
ggttatttgactgtataatagtactatactatagtattttagattagatttaatttttttgcataaataaaagttatatagattagattaggattagata |
37529048 |
T |
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| Q |
360 |
tataggagtgcagtatcccgcgggatacacggggggaaaatttctgttgtgtaaatccttaactttgaaggcccactgacccacctcactacactacact |
459 |
Q |
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| T |
37529049 |
tataggagtgcagtatcccgcgggatacacggggggaaattttctgttgtgtaaatccttaactttgaaggcccactgacccacctcactacactacact |
37529148 |
T |
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| Q |
460 |
cctcttaaaatccttcgtaccacgtttctgtatcacacaccagttctgtgcctg |
513 |
Q |
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| T |
37529149 |
cctcttaaaatccttcgtaccacgtttctgtatcacacaccagttctgtgcctg |
37529202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 68 - 118
Target Start/End: Original strand, 37528759 - 37528809
Alignment:
| Q |
68 |
tttcttttagaatgacagtagagtaagagtttagaaagaagatcgaagtat |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37528759 |
tttcttttagaatgacagtagagtaagagtttagaaagaagatcgaagtat |
37528809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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