View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13371_low_3 (Length: 369)
Name: NF13371_low_3
Description: NF13371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13371_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 34441834 - 34441488
Alignment:
| Q |
1 |
gattacaaaagtttagataaaatctacggtttgttacagtaaacatattggattaggatttacaatttgaatttgaa------aatagattacaataaca |
94 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34441834 |
gattacaaaagtttagataaaatctacggtttgttacagtaaacatattggattaggatttacaatttgaatttgaatttgaaaatagattacaataaca |
34441735 |
T |
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| Q |
95 |
aactatgagaatattactccaacaaactcaacccttatattctgatctgcttatttatatctcaagggtatcatcattattaaaagatatcaagtactgt |
194 |
Q |
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| T |
34441734 |
aactatgagaatattactccaaaaaactcaacccttatattct---ctgcttatttatatctcaagggtatcatcattattaaaagatatcaagtactgt |
34441638 |
T |
|
| Q |
195 |
taatgaaattggagggattatgacattcatctcattgccaggattctgaagtggacttgtttgtggtgctatctgcatacataaacaaacataactagat |
294 |
Q |
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| T |
34441637 |
taatgaaattggagggattatgacattcatctcattgccaggattctgaagtggactttgttgtggtgctatctgcatacataaacaa--ataactagat |
34441540 |
T |
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| Q |
295 |
attagatccatgcactggtctttttatttttgtaacaaatttataacaaagg |
346 |
Q |
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| T |
34441539 |
attagatccatgcactggtctttttatttttgtaacaaatttataacaaagg |
34441488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 189 - 346
Target Start/End: Complemental strand, 34467380 - 34467223
Alignment:
| Q |
189 |
tactgttaatgaaattggagggattatgacattcatctcattgccaggattctgaagtggacttgtttgtggtgctatctgcatacataaacaaacataa |
288 |
Q |
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| T |
34467380 |
tactgttaatgaaactggagggatcatgacattcatctcattgccaggattctgaagtggacttgtttgtggtgctatctgcatacataaacaaacataa |
34467281 |
T |
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| Q |
289 |
ctagatattagatccatgcactggtctttttatttttgtaacaaatttataacaaagg |
346 |
Q |
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| T |
34467280 |
cttgatattagatccatgcaccagtctttctatttatgtaacaaatttataacaaagg |
34467223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 176 - 342
Target Start/End: Complemental strand, 34451464 - 34451298
Alignment:
| Q |
176 |
aaaagatatcaagtactgttaatgaaattggagggattatgacattcatctcattgccaggattctgaagtggacttgtttgtggtgctatctgcataca |
275 |
Q |
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| T |
34451464 |
aaaacatatcaagtattgttaatgacgttggttggactatgacattcatctcattgccaggattctgaagtggacttgtttgtggtgctatctgcataca |
34451365 |
T |
|
| Q |
276 |
taaacaaacataactagatattagatccatgcactggtctttttatttttgtaacaaatttataaca |
342 |
Q |
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| T |
34451364 |
taaacaaacataacttgatattagatccatgcgctagtctttttatttttgtaacaaatatataaca |
34451298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 132
Target Start/End: Complemental strand, 34451613 - 34451538
Alignment:
| Q |
57 |
gatttacaatttgaatttgaaaatagattacaataacaaactatgagaatattactccaacaaactcaacccttat |
132 |
Q |
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| T |
34451613 |
gatttacaatttgaatttgaaaacagagtaaggtaacaaactatgagaatattactccaacagattcaacccttat |
34451538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 118
Target Start/End: Original strand, 334513 - 334628
Alignment:
| Q |
4 |
tacaaaagtttagataaaatctacggtttgttacagtaaacatattggattaggatttacaatttgaatttgaaaatagattacaataacaaac-tatga |
102 |
Q |
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|||||| ||| ||| || ||||| |||||||||| |||||| || |||||||||||||||||||||||| ||||||| ||||| | | | | ||||| |
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| T |
334513 |
tacaaaggttgagagaatatctagagtttgttacaacaaacatcttagattaggatttacaatttgaatttagaaatagaatacaacatccagcttatga |
334612 |
T |
|
| Q |
103 |
gaatattactccaaca |
118 |
Q |
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||||| |||||||||| |
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| T |
334613 |
gaatactactccaaca |
334628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 119
Target Start/End: Original strand, 17881572 - 17881674
Alignment:
| Q |
23 |
tctacggtttgttacagtaaacatattggattaggatttacaatttgaatttgaaaa-------tagattacaataacaaactatgagaatattactcca |
115 |
Q |
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||||| |||||||||| ||||| ||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||| |||||| | || |
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| T |
17881572 |
tctacagtttgttacacgaaacacattggattagg-tttacaatttgaatttaaaaattaaaaatagattacaataacaaactatgaggatattagttca |
17881670 |
T |
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| Q |
116 |
acaa |
119 |
Q |
| |
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|||| |
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| T |
17881671 |
acaa |
17881674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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