View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13371_low_4 (Length: 359)
Name: NF13371_low_4
Description: NF13371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13371_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 9 - 341
Target Start/End: Complemental strand, 26614796 - 26614471
Alignment:
| Q |
9 |
acatcatcatgcagaaaatgcaacttcttctagtacacatgcattcatctttgcatggtgataatgtaagaataattttatta-taattttactattaat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
26614796 |
acatcatcatgcagaaaatgcaacttcttctagtacacat--------ctttgcatggtgataatgtaagaataattttattaataattttactattaat |
26614705 |
T |
|
| Q |
108 |
ttaatatttagagtaaggtagtgcacatgatgatttaaattagagtaaggcatagcaaagtttggacaagtactagtttattttattatatgatatgaaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26614704 |
ttaatatttagagtaaggtagtgcacatgatgatttaaattagagtaaggcatagcaaagtttggacaagtactagtttattttattatatgatatgaaa |
26614605 |
T |
|
| Q |
208 |
tgatatgtgaggattttgacactgacaatgagacctactgtaattggagggggagcagtcaagagacatatggagacagcaatgtgtgcgtctatatgca |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26614604 |
tgatatgtgaggattttgacactgacaatgagacctactgtaattggagggggagcagtcaagagacatatggagacagcaatgtgtgcgtctatatgca |
26614505 |
T |
|
| Q |
308 |
gttatctaattaataccatggaccagttcccctt |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
26614504 |
gttatctaattaataccatggaccagttcccctt |
26614471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University